binaries/src/ViennaRNA/doc/latex/energy__const_8h.tex

   1 \hypertarget{energy__const_8h}{
   2 \section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy\_\-const.h File Reference}
   3 \label{energy__const_8h}\index{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy\_\-const.h@{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy\_\-const.h}}
   4 }
   5 Include dependency graph for energy\_\-const.h:\nopagebreak
   6 \begin{figure}[H]
   7 \begin{center}
   8 \leavevmode
   9 \includegraphics[width=225pt]{energy__const_8h__incl}
  10 \end{center}
  11 \end{figure}
  12 This graph shows which files directly or indirectly include this file:\nopagebreak
  13 \begin{figure}[H]
  14 \begin{center}
  15 \leavevmode
  16 \includegraphics[width=420pt]{energy__const_8h__dep__incl}
  17 \end{center}
  18 \end{figure}
  19 \subsection*{Defines}
  20 \begin{DoxyCompactItemize}
  21 \item
  22 \#define \hyperlink{energy__const_8h_ab1e4a8d82f24ed5db01dde5f25269cf1}{GASCONST}~1.98717
  23 \item
  24 \#define \hyperlink{energy__const_8h_a307c72605e3713972b4f4fb2d53ea20e}{K0}~273.15
  25 \item
  26 \#define \hyperlink{energy__const_8h_a12c2040f25d8e3a7b9e1c2024c618cb6}{INF}~10000000
  27 \item
  28 \#define \hyperlink{energy__const_8h_a5064c29ab2d1e20c2304b3c67562774d}{FORBIDDEN}~9999
  29 \item
  30 \#define \hyperlink{energy__const_8h_a96a9822fa134450197dd454b1478a193}{BONUS}~10000
  31 \item
  32 \#define \hyperlink{energy__const_8h_a5e75221c779d618eab81e096f37e32ce}{NBPAIRS}~7
  33 \item
  34 \#define \hyperlink{energy__const_8h_ae646250fd59311356c7e5722a81c3a96}{TURN}~3
  35 \item
  36 \#define \hyperlink{energy__const_8h_ad1bd6eabac419670ddd3c9ed82145988}{MAXLOOP}~30
  37 \end{DoxyCompactItemize}
  38
  39
  40 \subsection{Detailed Description}
  41 energy constants
  42
  43 \subsection{Define Documentation}
  44 \hypertarget{energy__const_8h_ab1e4a8d82f24ed5db01dde5f25269cf1}{
  45 \index{energy\_\-const.h@{energy\_\-const.h}!GASCONST@{GASCONST}}
  46 \index{GASCONST@{GASCONST}!energy_const.h@{energy\_\-const.h}}
  47 \subsubsection[{GASCONST}]{\setlength{\rightskip}{0pt plus 5cm}\#define GASCONST~1.98717}}
  48 \label{energy__const_8h_ab1e4a8d82f24ed5db01dde5f25269cf1}
  49 The gas constant \hypertarget{energy__const_8h_a307c72605e3713972b4f4fb2d53ea20e}{
  50 \index{energy\_\-const.h@{energy\_\-const.h}!K0@{K0}}
  51 \index{K0@{K0}!energy_const.h@{energy\_\-const.h}}
  52 \subsubsection[{K0}]{\setlength{\rightskip}{0pt plus 5cm}\#define K0~273.15}}
  53 \label{energy__const_8h_a307c72605e3713972b4f4fb2d53ea20e}
  54 0 deg Celsius in Kelvin \hypertarget{energy__const_8h_a12c2040f25d8e3a7b9e1c2024c618cb6}{
  55 \index{energy\_\-const.h@{energy\_\-const.h}!INF@{INF}}
  56 \index{INF@{INF}!energy_const.h@{energy\_\-const.h}}
  57 \subsubsection[{INF}]{\setlength{\rightskip}{0pt plus 5cm}\#define INF~10000000}}
  58 \label{energy__const_8h_a12c2040f25d8e3a7b9e1c2024c618cb6}
  59 Infinity as used in minimization routines \hypertarget{energy__const_8h_a5064c29ab2d1e20c2304b3c67562774d}{
  60 \index{energy\_\-const.h@{energy\_\-const.h}!FORBIDDEN@{FORBIDDEN}}
  61 \index{FORBIDDEN@{FORBIDDEN}!energy_const.h@{energy\_\-const.h}}
  62 \subsubsection[{FORBIDDEN}]{\setlength{\rightskip}{0pt plus 5cm}\#define FORBIDDEN~9999}}
  63 \label{energy__const_8h_a5064c29ab2d1e20c2304b3c67562774d}
  64 forbidden \hypertarget{energy__const_8h_a96a9822fa134450197dd454b1478a193}{
  65 \index{energy\_\-const.h@{energy\_\-const.h}!BONUS@{BONUS}}
  66 \index{BONUS@{BONUS}!energy_const.h@{energy\_\-const.h}}
  67 \subsubsection[{BONUS}]{\setlength{\rightskip}{0pt plus 5cm}\#define BONUS~10000}}
  68 \label{energy__const_8h_a96a9822fa134450197dd454b1478a193}
  69 bonus contribution \hypertarget{energy__const_8h_a5e75221c779d618eab81e096f37e32ce}{
  70 \index{energy\_\-const.h@{energy\_\-const.h}!NBPAIRS@{NBPAIRS}}
  71 \index{NBPAIRS@{NBPAIRS}!energy_const.h@{energy\_\-const.h}}
  72 \subsubsection[{NBPAIRS}]{\setlength{\rightskip}{0pt plus 5cm}\#define NBPAIRS~7}}
  73 \label{energy__const_8h_a5e75221c779d618eab81e096f37e32ce}
  74 The number of distinguishable base pairs \hypertarget{energy__const_8h_ae646250fd59311356c7e5722a81c3a96}{
  75 \index{energy\_\-const.h@{energy\_\-const.h}!TURN@{TURN}}
  76 \index{TURN@{TURN}!energy_const.h@{energy\_\-const.h}}
  77 \subsubsection[{TURN}]{\setlength{\rightskip}{0pt plus 5cm}\#define TURN~3}}
  78 \label{energy__const_8h_ae646250fd59311356c7e5722a81c3a96}
  79 The minimum loop length \hypertarget{energy__const_8h_ad1bd6eabac419670ddd3c9ed82145988}{
  80 \index{energy\_\-const.h@{energy\_\-const.h}!MAXLOOP@{MAXLOOP}}
  81 \index{MAXLOOP@{MAXLOOP}!energy_const.h@{energy\_\-const.h}}
  82 \subsubsection[{MAXLOOP}]{\setlength{\rightskip}{0pt plus 5cm}\#define MAXLOOP~30}}
  83 \label{energy__const_8h_ad1bd6eabac419670ddd3c9ed82145988}
  84 The maximum loop length