binaries/src/ViennaRNA/doc/latex/group__energy__parameters__convert.tex

   1 \hypertarget{group__energy__parameters__convert}{\section{Converting energy parameter files}
   2 \label{group__energy__parameters__convert}\index{Converting energy parameter files@{Converting energy parameter files}}
   3 }
   4
   5
   6 Convert energy parameter files into the latest format.
   7
   8
   9 Collaboration diagram for Converting energy parameter files\-:
  10 \nopagebreak
  11 \begin{figure}[H]
  12 \begin{center}
  13 \leavevmode
  14 \includegraphics[width=350pt]{group__energy__parameters__convert}
  15 \end{center}
  16 \end{figure}
  17 \subsection*{Files}
  18 \begin{DoxyCompactItemize}
  19 \item
  20 file \hyperlink{convert__epars_8h}{convert\-\_\-epars.\-h}
  21 \begin{DoxyCompactList}\small\item\em Functions and definitions for energy parameter file format conversion. \end{DoxyCompactList}\end{DoxyCompactItemize}
  22 \subsection*{Macros}
  23 \begin{DoxyCompactItemize}
  24 \item
  25 \#define \hyperlink{group__energy__parameters__convert_ga8dc6aee5a806c49b71557152f9616bc4}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-A\-L\-L}~1\-U
  26 \item
  27 \#define \hyperlink{group__energy__parameters__convert_gaf66fe2cb11dfcfd32d791049c254a8a4}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-H\-P}~2\-U
  28 \item
  29 \#define \hyperlink{group__energy__parameters__convert_gad23522d63f8d4c50d5a5deee9bee3ef2}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-T\-A\-C\-K}~4\-U
  30 \item
  31 \#define \hyperlink{group__energy__parameters__convert_gaa892c7b4957459090f3e08da298cc347}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-H\-P}~8\-U
  32 \item
  33 \#define \hyperlink{group__energy__parameters__convert_ga4ff223fb1f9c62cd92d9ab811ad03d55}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T}~16\-U
  34 \item
  35 \#define \hyperlink{group__energy__parameters__convert_gaf5d3743219f83c6348155cd81e755bbb}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-1\-N}~32\-U
  36 \item
  37 \#define \hyperlink{group__energy__parameters__convert_ga78382ec622ba99e0ac2262317bdd7316}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-23}~64\-U
  38 \item
  39 \#define \hyperlink{group__energy__parameters__convert_gae67af9f1cdf7baf2865481282a5d1034}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-M\-U\-L\-T\-I}~128\-U
  40 \item
  41 \#define \hyperlink{group__energy__parameters__convert_gaf14ead7ef1fdbe725ade653750fc51e3}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-E\-X\-T}~256\-U
  42 \item
  43 \#define \hyperlink{group__energy__parameters__convert_ga036ffd996d8c8a9acf631760dd1da24b}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E5}~512\-U
  44 \item
  45 \#define \hyperlink{group__energy__parameters__convert_ga34a8a5479ef885834ef32f3fb43d79bc}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E3}~1024\-U
  46 \item
  47 \#define \hyperlink{group__energy__parameters__convert_ga079aafefd5f8ab57ee5120099a34bd25}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-11}~2048\-U
  48 \item
  49 \#define \hyperlink{group__energy__parameters__convert_gacf770881d9034431ebe741642342a1f9}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-21}~4096\-U
  50 \item
  51 \#define \hyperlink{group__energy__parameters__convert_gaa307671e2631cdacad9cbe4c6583b05f}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-22}~8192\-U
  52 \item
  53 \#define \hyperlink{group__energy__parameters__convert_ga7092fe0be4de6f02cc0bf08e81af726a}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-B\-U\-L\-G\-E}~16384\-U
  54 \item
  55 \#define \hyperlink{group__energy__parameters__convert_gac5c2289fdf8ff1b980976d1613ff943a}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T}~32768\-U
  56 \item
  57 \#define \hyperlink{group__energy__parameters__convert_gaf2c8755d64eff3852aa45df9ac80a4fe}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-L}~65536\-U
  58 \item
  59 \#define \hyperlink{group__energy__parameters__convert_ga46d5b1535ae86060b6317565b7c6b40b}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-I\-S\-C}~131072\-U
  60 \item
  61 \#define \hyperlink{group__energy__parameters__convert_gaa1ff48a79642d69579d1766561ec6db6}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-P\-E\-C\-I\-A\-L\-\_\-\-H\-P}~262144\-U
  62 \item
  63 \#define \hyperlink{group__energy__parameters__convert_ga0d4e8a836bb4864ab5129c085dbf592d}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-V\-A\-N\-I\-L\-L\-A}~524288\-U
  64 \item
  65 \#define \hyperlink{group__energy__parameters__convert_ga2eb0462f16939ddacdaf751a88d675ce}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-N\-I\-N\-I\-O}~1048576\-U
  66 \item
  67 \#define \hyperlink{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-U\-M\-P}~2097152\-U
  68 \end{DoxyCompactItemize}
  69 \subsection*{Functions}
  70 \begin{DoxyCompactItemize}
  71 \item
  72 void \hyperlink{group__energy__parameters__convert_gafbe538bc4eb2cf2a33326e1010005f8a}{convert\-\_\-parameter\-\_\-file} (const char $\ast$iname, const char $\ast$oname, unsigned int options)
  73 \end{DoxyCompactItemize}
  74
  75
  76 \subsection{Detailed Description}
  77 Convert energy parameter files into the latest format. To preserve some backward compatibility the R\-N\-Alib also provides functions to convert energy parameter files from the format used in version 1.\-4-\/1.\-8 into the new format used since version 2.\-0
  78
  79 \subsection{Macro Definition Documentation}
  80 \hypertarget{group__energy__parameters__convert_ga8dc6aee5a806c49b71557152f9616bc4}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-A\-L\-L@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-A\-L\-L}}
  81 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-A\-L\-L@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-A\-L\-L}!Converting energy parameter files@{Converting energy parameter files}}
  82 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-A\-L\-L}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-A\-L\-L~1\-U}}\label{group__energy__parameters__convert_ga8dc6aee5a806c49b71557152f9616bc4}
  83 Flag to indicate printing of a complete parameter set \hypertarget{group__energy__parameters__convert_gaf66fe2cb11dfcfd32d791049c254a8a4}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-H\-P@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-H\-P}}
  84 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-H\-P@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-H\-P}!Converting energy parameter files@{Converting energy parameter files}}
  85 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-H\-P}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-H\-P~2\-U}}\label{group__energy__parameters__convert_gaf66fe2cb11dfcfd32d791049c254a8a4}
  86 Flag to indicate printing of hairpin contributions \hypertarget{group__energy__parameters__convert_gad23522d63f8d4c50d5a5deee9bee3ef2}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-T\-A\-C\-K@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-T\-A\-C\-K}}
  87 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-T\-A\-C\-K@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-T\-A\-C\-K}!Converting energy parameter files@{Converting energy parameter files}}
  88 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-T\-A\-C\-K}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-T\-A\-C\-K~4\-U}}\label{group__energy__parameters__convert_gad23522d63f8d4c50d5a5deee9bee3ef2}
  89 Flag to indicate printing of base pair stack contributions \hypertarget{group__energy__parameters__convert_gaa892c7b4957459090f3e08da298cc347}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-H\-P@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-H\-P}}
  90 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-H\-P@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-H\-P}!Converting energy parameter files@{Converting energy parameter files}}
  91 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-H\-P}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-H\-P~8\-U}}\label{group__energy__parameters__convert_gaa892c7b4957459090f3e08da298cc347}
  92 Flag to indicate printing of hairpin mismatch contribution \hypertarget{group__energy__parameters__convert_ga4ff223fb1f9c62cd92d9ab811ad03d55}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T}}
  93 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T}!Converting energy parameter files@{Converting energy parameter files}}
  94 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T~16\-U}}\label{group__energy__parameters__convert_ga4ff223fb1f9c62cd92d9ab811ad03d55}
  95 Flag to indicate printing of interior loop mismatch contribution \hypertarget{group__energy__parameters__convert_gaf5d3743219f83c6348155cd81e755bbb}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-1\-N@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-1\-N}}
  96 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-1\-N@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-1\-N}!Converting energy parameter files@{Converting energy parameter files}}
  97 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-1\-N}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-1\-N~32\-U}}\label{group__energy__parameters__convert_gaf5d3743219f83c6348155cd81e755bbb}
  98 Flag to indicate printing of 1\-:n interior loop mismatch contribution \hypertarget{group__energy__parameters__convert_ga78382ec622ba99e0ac2262317bdd7316}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-23@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-23}}
  99 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-23@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-23}!Converting energy parameter files@{Converting energy parameter files}}
 100 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-23}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-23~64\-U}}\label{group__energy__parameters__convert_ga78382ec622ba99e0ac2262317bdd7316}
 101 Flag to indicate printing of 2\-:3 interior loop mismatch contribution \hypertarget{group__energy__parameters__convert_gae67af9f1cdf7baf2865481282a5d1034}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-M\-U\-L\-T\-I@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-M\-U\-L\-T\-I}}
 102 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-M\-U\-L\-T\-I@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-M\-U\-L\-T\-I}!Converting energy parameter files@{Converting energy parameter files}}
 103 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-M\-U\-L\-T\-I}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-M\-U\-L\-T\-I~128\-U}}\label{group__energy__parameters__convert_gae67af9f1cdf7baf2865481282a5d1034}
 104 Flag to indicate printing of multi loop mismatch contribution \hypertarget{group__energy__parameters__convert_gaf14ead7ef1fdbe725ade653750fc51e3}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-E\-X\-T@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-E\-X\-T}}
 105 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-E\-X\-T@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-E\-X\-T}!Converting energy parameter files@{Converting energy parameter files}}
 106 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-E\-X\-T}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-E\-X\-T~256\-U}}\label{group__energy__parameters__convert_gaf14ead7ef1fdbe725ade653750fc51e3}
 107 Flag to indicate printing of exterior loop mismatch contribution \hypertarget{group__energy__parameters__convert_ga036ffd996d8c8a9acf631760dd1da24b}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E5@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E5}}
 108 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E5@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E5}!Converting energy parameter files@{Converting energy parameter files}}
 109 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E5}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E5~512\-U}}\label{group__energy__parameters__convert_ga036ffd996d8c8a9acf631760dd1da24b}
 110 Flag to indicate printing of 5' dangle conctribution \hypertarget{group__energy__parameters__convert_ga34a8a5479ef885834ef32f3fb43d79bc}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E3@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E3}}
 111 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E3@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E3}!Converting energy parameter files@{Converting energy parameter files}}
 112 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E3}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E3~1024\-U}}\label{group__energy__parameters__convert_ga34a8a5479ef885834ef32f3fb43d79bc}
 113 Flag to indicate printing of 3' dangle contribution \hypertarget{group__energy__parameters__convert_ga079aafefd5f8ab57ee5120099a34bd25}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-11@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-11}}
 114 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-11@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-11}!Converting energy parameter files@{Converting energy parameter files}}
 115 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-11}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-11~2048\-U}}\label{group__energy__parameters__convert_ga079aafefd5f8ab57ee5120099a34bd25}
 116 Flag to indicate printing of 1\-:1 interior loop contribution \hypertarget{group__energy__parameters__convert_gacf770881d9034431ebe741642342a1f9}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-21@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-21}}
 117 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-21@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-21}!Converting energy parameter files@{Converting energy parameter files}}
 118 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-21}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-21~4096\-U}}\label{group__energy__parameters__convert_gacf770881d9034431ebe741642342a1f9}
 119 Flag to indicate printing of 2\-:1 interior loop contribution \hypertarget{group__energy__parameters__convert_gaa307671e2631cdacad9cbe4c6583b05f}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-22@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-22}}
 120 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-22@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-22}!Converting energy parameter files@{Converting energy parameter files}}
 121 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-22}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-22~8192\-U}}\label{group__energy__parameters__convert_gaa307671e2631cdacad9cbe4c6583b05f}
 122 Flag to indicate printing of 2\-:2 interior loop contribution \hypertarget{group__energy__parameters__convert_ga7092fe0be4de6f02cc0bf08e81af726a}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-B\-U\-L\-G\-E@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-B\-U\-L\-G\-E}}
 123 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-B\-U\-L\-G\-E@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-B\-U\-L\-G\-E}!Converting energy parameter files@{Converting energy parameter files}}
 124 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-B\-U\-L\-G\-E}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-B\-U\-L\-G\-E~16384\-U}}\label{group__energy__parameters__convert_ga7092fe0be4de6f02cc0bf08e81af726a}
 125 Flag to indicate printing of bulge loop contribution \hypertarget{group__energy__parameters__convert_gac5c2289fdf8ff1b980976d1613ff943a}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T}}
 126 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T}!Converting energy parameter files@{Converting energy parameter files}}
 127 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T~32768\-U}}\label{group__energy__parameters__convert_gac5c2289fdf8ff1b980976d1613ff943a}
 128 Flag to indicate printing of interior loop contribution \hypertarget{group__energy__parameters__convert_gaf2c8755d64eff3852aa45df9ac80a4fe}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-L@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-L}}
 129 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-L@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-L}!Converting energy parameter files@{Converting energy parameter files}}
 130 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-L}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-L~65536\-U}}\label{group__energy__parameters__convert_gaf2c8755d64eff3852aa45df9ac80a4fe}
 131 Flag to indicate printing of multi loop contribution \hypertarget{group__energy__parameters__convert_ga46d5b1535ae86060b6317565b7c6b40b}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-I\-S\-C@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-I\-S\-C}}
 132 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-I\-S\-C@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-I\-S\-C}!Converting energy parameter files@{Converting energy parameter files}}
 133 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-I\-S\-C}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-I\-S\-C~131072\-U}}\label{group__energy__parameters__convert_ga46d5b1535ae86060b6317565b7c6b40b}
 134 Flag to indicate printing of misc contributions (such as terminal\-A\-U) \hypertarget{group__energy__parameters__convert_gaa1ff48a79642d69579d1766561ec6db6}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-P\-E\-C\-I\-A\-L\-\_\-\-H\-P@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-P\-E\-C\-I\-A\-L\-\_\-\-H\-P}}
 135 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-P\-E\-C\-I\-A\-L\-\_\-\-H\-P@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-P\-E\-C\-I\-A\-L\-\_\-\-H\-P}!Converting energy parameter files@{Converting energy parameter files}}
 136 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-P\-E\-C\-I\-A\-L\-\_\-\-H\-P}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-P\-E\-C\-I\-A\-L\-\_\-\-H\-P~262144\-U}}\label{group__energy__parameters__convert_gaa1ff48a79642d69579d1766561ec6db6}
 137 Flag to indicate printing of special hairpin contributions (tri-\/, tetra-\/, hexa-\/loops) \hypertarget{group__energy__parameters__convert_ga0d4e8a836bb4864ab5129c085dbf592d}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-V\-A\-N\-I\-L\-L\-A@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-V\-A\-N\-I\-L\-L\-A}}
 138 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-V\-A\-N\-I\-L\-L\-A@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-V\-A\-N\-I\-L\-L\-A}!Converting energy parameter files@{Converting energy parameter files}}
 139 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-V\-A\-N\-I\-L\-L\-A}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-V\-A\-N\-I\-L\-L\-A~524288\-U}}\label{group__energy__parameters__convert_ga0d4e8a836bb4864ab5129c085dbf592d}
 140 Flag to indicate printing of given parameters only\par
 141 \begin{DoxyNote}{Note}
 142 This option overrides all other output options, except \hyperlink{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-U\-M\-P} !
 143 \end{DoxyNote}
 144 \hypertarget{group__energy__parameters__convert_ga2eb0462f16939ddacdaf751a88d675ce}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-N\-I\-N\-I\-O@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-N\-I\-N\-I\-O}}
 145 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-N\-I\-N\-I\-O@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-N\-I\-N\-I\-O}!Converting energy parameter files@{Converting energy parameter files}}
 146 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-N\-I\-N\-I\-O}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-N\-I\-N\-I\-O~1048576\-U}}\label{group__energy__parameters__convert_ga2eb0462f16939ddacdaf751a88d675ce}
 147 Flag to indicate printing of interior loop asymmetry contribution \hypertarget{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}{\index{Converting energy parameter files@{Converting energy parameter files}!V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-U\-M\-P@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-U\-M\-P}}
 148 \index{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-U\-M\-P@{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-U\-M\-P}!Converting energy parameter files@{Converting energy parameter files}}
 149 \subsubsection[{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-U\-M\-P}]{\setlength{\rightskip}{0pt plus 5cm}\#define V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-U\-M\-P~2097152\-U}}\label{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}
 150 Flag to indicate dumping the energy contributions from the library instead of an input file
 151
 152 \subsection{Function Documentation}
 153 \hypertarget{group__energy__parameters__convert_gafbe538bc4eb2cf2a33326e1010005f8a}{\index{Converting energy parameter files@{Converting energy parameter files}!convert\-\_\-parameter\-\_\-file@{convert\-\_\-parameter\-\_\-file}}
 154 \index{convert\-\_\-parameter\-\_\-file@{convert\-\_\-parameter\-\_\-file}!Converting energy parameter files@{Converting energy parameter files}}
 155 \subsubsection[{convert\-\_\-parameter\-\_\-file}]{\setlength{\rightskip}{0pt plus 5cm}void convert\-\_\-parameter\-\_\-file (
 156 \begin{DoxyParamCaption}
 157 \item[{const char $\ast$}]{iname, }
 158 \item[{const char $\ast$}]{oname, }
 159 \item[{unsigned int}]{options}
 160 \end{DoxyParamCaption}
 161 )}}\label{group__energy__parameters__convert_gafbe538bc4eb2cf2a33326e1010005f8a}
 162 Convert/dump a Vienna 1.\-8.\-4 formatted energy parameter file
 163
 164 The options argument allows to control the different output modes.\par
 165  Currently available options are\-:\par
 166  \hyperlink{group__energy__parameters__convert_ga8dc6aee5a806c49b71557152f9616bc4}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-A\-L\-L}, \hyperlink{group__energy__parameters__convert_gaf66fe2cb11dfcfd32d791049c254a8a4}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-H\-P}, \hyperlink{group__energy__parameters__convert_gad23522d63f8d4c50d5a5deee9bee3ef2}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-T\-A\-C\-K}\par
 167  \hyperlink{group__energy__parameters__convert_gaa892c7b4957459090f3e08da298cc347}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-H\-P}, \hyperlink{group__energy__parameters__convert_ga4ff223fb1f9c62cd92d9ab811ad03d55}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T}, \hyperlink{group__energy__parameters__convert_gaf5d3743219f83c6348155cd81e755bbb}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-1\-N}\par
 168  \hyperlink{group__energy__parameters__convert_ga78382ec622ba99e0ac2262317bdd7316}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-I\-N\-T\-\_\-23}, \hyperlink{group__energy__parameters__convert_gae67af9f1cdf7baf2865481282a5d1034}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-M\-U\-L\-T\-I}, \hyperlink{group__energy__parameters__convert_gaf14ead7ef1fdbe725ade653750fc51e3}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-M\-\_\-\-E\-X\-T}\par
 169  \hyperlink{group__energy__parameters__convert_ga036ffd996d8c8a9acf631760dd1da24b}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E5}, \hyperlink{group__energy__parameters__convert_ga34a8a5479ef885834ef32f3fb43d79bc}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-A\-N\-G\-L\-E3}, \hyperlink{group__energy__parameters__convert_ga079aafefd5f8ab57ee5120099a34bd25}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-11}\par
 170  \hyperlink{group__energy__parameters__convert_gacf770881d9034431ebe741642342a1f9}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-21}, \hyperlink{group__energy__parameters__convert_gaa307671e2631cdacad9cbe4c6583b05f}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T\-\_\-22}, \hyperlink{group__energy__parameters__convert_ga7092fe0be4de6f02cc0bf08e81af726a}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-B\-U\-L\-G\-E}\par
 171  \hyperlink{group__energy__parameters__convert_gac5c2289fdf8ff1b980976d1613ff943a}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-I\-N\-T}, \hyperlink{group__energy__parameters__convert_gaf2c8755d64eff3852aa45df9ac80a4fe}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-L}, \hyperlink{group__energy__parameters__convert_ga46d5b1535ae86060b6317565b7c6b40b}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-M\-I\-S\-C}\par
 172  \hyperlink{group__energy__parameters__convert_gaa1ff48a79642d69579d1766561ec6db6}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-S\-P\-E\-C\-I\-A\-L\-\_\-\-H\-P}, \hyperlink{group__energy__parameters__convert_ga0d4e8a836bb4864ab5129c085dbf592d}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-V\-A\-N\-I\-L\-L\-A}, \hyperlink{group__energy__parameters__convert_ga2eb0462f16939ddacdaf751a88d675ce}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-N\-I\-N\-I\-O}\par
 173  \hyperlink{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}{V\-R\-N\-A\-\_\-\-C\-O\-N\-V\-E\-R\-T\-\_\-\-O\-U\-T\-P\-U\-T\-\_\-\-D\-U\-M\-P}
 174
 175 The defined options are fine for bitwise compare-\/ and assignment-\/operations, e. g.\-: pass a collection of options as a single value like this\-: \begin{DoxyVerb}convert_parameter_file(ifile, ofile, option_1 | option_2 | option_n) \end{DoxyVerb}
 176
 177
 178
 179 \begin{DoxyParams}{Parameters}
 180 {\em iname} & The input file name (If N\-U\-L\-L input is read from stdin) \\
 181 \hline
 182 {\em oname} & The output file name (If N\-U\-L\-L output is written to stdout) \\
 183 \hline
 184 {\em options} & The options (as described above) \\
 185 \hline
 186 \end{DoxyParams}