binaries/src/ViennaRNA/doc/latex/group__local__fold.tex

   1 \hypertarget{group__local__fold}{\section{Predicting Locally stable structures of large sequences}
   2 \label{group__local__fold}\index{Predicting Locally stable structures of large sequences@{Predicting Locally stable structures of large sequences}}
   3 }
   4 Collaboration diagram for Predicting Locally stable structures of large sequences\-:
   5 \nopagebreak
   6 \begin{figure}[H]
   7 \begin{center}
   8 \leavevmode
   9 \includegraphics[width=350pt]{group__local__fold}
  10 \end{center}
  11 \end{figure}
  12 \subsection*{Modules}
  13 \begin{DoxyCompactItemize}
  14 \item
  15 \hyperlink{group__local__mfe__fold}{Local M\-F\-E structure Prediction and Z-\/scores}
  16 \item
  17 \hyperlink{group__local__pf__fold}{Partition functions for locally stable secondary structures}
  18 \item
  19 \hyperlink{group__local__consensus__fold}{Local M\-F\-E consensus structures for Sequence Alignments}
  20 \end{DoxyCompactItemize}
  21 \subsection*{Files}
  22 \begin{DoxyCompactItemize}
  23 \item
  24 file \hyperlink{Lfold_8h}{Lfold.\-h}
  25 \begin{DoxyCompactList}\small\item\em Predicting local M\-F\-E structures of large sequences. \end{DoxyCompactList}\end{DoxyCompactItemize}
  26
  27
  28 \subsection{Detailed Description}
  29 Local structures can be predicted by a modified version of the \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()} algorithm that restricts the span of all base pairs.