binaries/src/ViennaRNA/doc/latex/group__local__fold.tex

   1 \hypertarget{group__local__fold}{
   2 \section{Predicting Locally stable structures of large sequences}
   3 \label{group__local__fold}\index{Predicting Locally stable structures of large sequences@{Predicting Locally stable structures of large sequences}}
   4 }
   5
   6
   7 Collaboration diagram for Predicting Locally stable structures of large sequences:\nopagebreak
   8 \begin{figure}[H]
   9 \begin{center}
  10 \leavevmode
  11 \includegraphics[width=413pt]{group__local__fold}
  12 \end{center}
  13 \end{figure}
  14 \subsection*{Modules}
  15 \begin{DoxyCompactItemize}
  16 \item
  17 \hyperlink{group__local__mfe__fold}{Local MFE structure Prediction and Z-\/scores}
  18 \item
  19 \hyperlink{group__local__pf__fold}{Partition functions for locally stable secondary structures}
  20 \item
  21 \hyperlink{group__local__consensus__fold}{Local MFE consensus structures for Sequence Alignments}
  22 \end{DoxyCompactItemize}
  23
  24
  25 \subsection{Detailed Description}
  26 Local structures can be predicted by a modified version of the \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()} algorithm that restricts the span of all base pairs.