binaries/src/ViennaRNA/doc/latex/group__local__mfe__fold.tex

   1 \hypertarget{group__local__mfe__fold}{\section{Local M\-F\-E structure Prediction and Z-\/scores}
   2 \label{group__local__mfe__fold}\index{Local M\-F\-E structure Prediction and Z-\/scores@{Local M\-F\-E structure Prediction and Z-\/scores}}
   3 }
   4 Collaboration diagram for Local M\-F\-E structure Prediction and Z-\/scores\-:
   5 \nopagebreak
   6 \begin{figure}[H]
   7 \begin{center}
   8 \leavevmode
   9 \includegraphics[width=350pt]{group__local__mfe__fold}
  10 \end{center}
  11 \end{figure}
  12 \subsection*{Functions}
  13 \begin{DoxyCompactItemize}
  14 \item
  15 float \hyperlink{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}{Lfold} (const char $\ast$string, char $\ast$structure, int maxdist)
  16 \begin{DoxyCompactList}\small\item\em The local analog to \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()}. \end{DoxyCompactList}\item
  17 float \hyperlink{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}{Lfoldz} (const char $\ast$string, char $\ast$structure, int maxdist, int zsc, double min\-\_\-z)
  18 \end{DoxyCompactItemize}
  19
  20
  21 \subsection{Detailed Description}
  22
  23
  24 \subsection{Function Documentation}
  25 \hypertarget{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}{\index{Local M\-F\-E structure Prediction and Z-\/scores@{Local M\-F\-E structure Prediction and Z-\/scores}!Lfold@{Lfold}}
  26 \index{Lfold@{Lfold}!Local MFE structure Prediction and Z-scores@{Local M\-F\-E structure Prediction and Z-\/scores}}
  27 \subsubsection[{Lfold}]{\setlength{\rightskip}{0pt plus 5cm}float Lfold (
  28 \begin{DoxyParamCaption}
  29 \item[{const char $\ast$}]{string, }
  30 \item[{char $\ast$}]{structure, }
  31 \item[{int}]{maxdist}
  32 \end{DoxyParamCaption}
  33 )}}\label{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}
  34
  35
  36 The local analog to \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()}.
  37
  38 Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'
  39
  40
  41 \begin{DoxyParams}{Parameters}
  42 {\em string} & \\
  43 \hline
  44 {\em structure} & \\
  45 \hline
  46 {\em maxdist} & \\
  47 \hline
  48 \end{DoxyParams}
  49 \hypertarget{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}{\index{Local M\-F\-E structure Prediction and Z-\/scores@{Local M\-F\-E structure Prediction and Z-\/scores}!Lfoldz@{Lfoldz}}
  50 \index{Lfoldz@{Lfoldz}!Local MFE structure Prediction and Z-scores@{Local M\-F\-E structure Prediction and Z-\/scores}}
  51 \subsubsection[{Lfoldz}]{\setlength{\rightskip}{0pt plus 5cm}float Lfoldz (
  52 \begin{DoxyParamCaption}
  53 \item[{const char $\ast$}]{string, }
  54 \item[{char $\ast$}]{structure, }
  55 \item[{int}]{maxdist, }
  56 \item[{int}]{zsc, }
  57 \item[{double}]{min\-\_\-z}
  58 \end{DoxyParamCaption}
  59 )}}\label{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}
  60
  61 \begin{DoxyParams}{Parameters}
  62 {\em string} & \\
  63 \hline
  64 {\em structure} & \\
  65 \hline
  66 {\em maxdist} & \\
  67 \hline
  68 {\em zsc} & \\
  69 \hline
  70 {\em min\-\_\-z} & \\
  71 \hline
  72 \end{DoxyParams}