binaries/src/ViennaRNA/doc/latex/params_8h_source.tex

   1 \hypertarget{params_8h}{\section{params.\-h}
   2 \label{params_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/params.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/params.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PARAMS\_H\_\_}
   7 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PARAMS\_H\_\_}
   8 00003 \textcolor{preprocessor}{}
   9 00004 \textcolor{preprocessor}{#include "\hyperlink{energy__const_8h}{energy\_const.h}"}
  10 00005 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
  11 00006
  12 00007 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
  13 00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
  14 00009 \textcolor{preprocessor}{}\textcolor{preprocessor}{#else}
  15 00010 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
  16 00011 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
  17 00012 \textcolor{preprocessor}{}
  18 00036 \hyperlink{structparamT}{paramT} *\hyperlink{group__energy__parameters_ga527ef619cd8210b84d5d53be1e0e29b6}{scale\_parameters}(\textcolor{keywordtype}{void});
  19 00037
  20 00052 \hyperlink{structparamT}{paramT} *\hyperlink{group__energy__parameters_gac2f3ca440b7eaf4d999fb27da949fe72}{get\_scaled\_parameters}(\textcolor{keywordtype}{double} temperature,
  21 00053                               \hyperlink{structmodel__detailsT}{model\_detailsT} md);
  22 00054
  23 00055 \hyperlink{structparamT}{paramT} *get\_parameter\_copy(\hyperlink{structparamT}{paramT} *par);
  24 00056
  25 00063 \hyperlink{structpf__paramT}{pf\_paramT} *\hyperlink{group__energy__parameters_gab85f6b6da051f380371deb0d8921bdba}{get\_scaled\_pf\_parameters}(\textcolor{keywordtype}{void});
  26 00064
  27 00088 \hyperlink{structpf__paramT}{pf\_paramT} *\hyperlink{group__energy__parameters_ga6fc2f3eef5a3024d44963ac59a42e39d}{get\_boltzmann\_factors}( \textcolor{keywordtype}{double} temperature,
  28 00089                                   \textcolor{keywordtype}{double} betaScale,
  29 00090                                   \hyperlink{structmodel__detailsT}{model\_detailsT} md,
  30 00091                                   \textcolor{keywordtype}{double} pf\_scale);
  31 00092
  32 00101 \hyperlink{structpf__paramT}{pf\_paramT} *\hyperlink{group__energy__parameters_gacba212326a051734797e65987260fdd0}{get\_boltzmann\_factor\_copy}(\hyperlink{structpf__paramT}{pf\_paramT} *parameters);
  33 00102
  34 00108 \hyperlink{structpf__paramT}{pf\_paramT} *\hyperlink{group__energy__parameters_gaa6a4297a2b91d6f7ae47dd61ca1862a0}{get\_scaled\_alipf\_parameters}(\textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n\_seq);
  35 00109
  36 00116 PUBLIC \hyperlink{structpf__paramT}{pf\_paramT} *\hyperlink{group__energy__parameters_gaaa049a8c9f1c2ed4398cb1b5a3d65a66}{get\_boltzmann\_factors\_ali}(\textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n\_seq,
  37 00117                                             \textcolor{keywordtype}{double} temperature,
  38 00118                                             \textcolor{keywordtype}{double} betaScale,
  39 00119                                             \hyperlink{structmodel__detailsT}{model\_detailsT} md,
  40 00120                                             \textcolor{keywordtype}{double} pf\_scale);
  41 00121
  42 00126 DEPRECATED(\hyperlink{structparamT}{paramT}     *copy\_parameters(\textcolor{keywordtype}{void}));
  43 00127 DEPRECATED(\hyperlink{structparamT}{paramT}     *set\_parameters(\hyperlink{structparamT}{paramT} *dest));
  44 00128 DEPRECATED(\hyperlink{structpf__paramT}{pf\_paramT}  *scale\_pf\_parameters(\textcolor{keywordtype}{void}));
  45 00129 DEPRECATED(\hyperlink{structpf__paramT}{pf\_paramT}  *copy\_pf\_param(\textcolor{keywordtype}{void}));
  46 00130 DEPRECATED(\hyperlink{structpf__paramT}{pf\_paramT}  *set\_pf\_param(\hyperlink{structparamT}{paramT} *dest));
  47 00131
  48 00132
  49 00133
  50 00134 \textcolor{preprocessor}{#endif}
  51 \end{DoxyCode}