binaries/src/ViennaRNA/doc/latex/part__func__up_8h_source.tex

   1 \hypertarget{part__func__up_8h}{\section{part\-\_\-func\-\_\-up.\-h}
   2 \label{part__func__up_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/part\-\_\-func\-\_\-up.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/part\-\_\-func\-\_\-up.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_UP\_H\_\_}
   7 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_UP\_H\_\_}
   8 00003 \textcolor{preprocessor}{}
   9 00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
  10 00005
  11 00006 \textcolor{preprocessor}{#define   RNA\_UP\_MODE\_1   1U}
  12 00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define   RNA\_UP\_MODE\_2   2U}
  13 00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define   RNA\_UP\_MODE\_3   4U}
  14 00009 \textcolor{preprocessor}{}
  15 00055 \hyperlink{structpu__contrib}{pu\_contrib} *\hyperlink{group__up__cofold_ga5b4ee40e190d2f633cd01cf0d2fe93cf}{pf\_unstru}(\textcolor{keywordtype}{char} *sequence,
  16 00056                       \textcolor{keywordtype}{int} max\_w);
  17 00057
  18 00100 \hyperlink{structinteract}{interact} *\hyperlink{group__up__cofold_ga1aa0aa02bc3a724f87360c03097afd00}{pf\_interact}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1,
  19 00101                       \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s2,
  20 00102                       \hyperlink{structpu__contrib}{pu\_contrib} *p\_c,
  21 00103                       \hyperlink{structpu__contrib}{pu\_contrib} *p\_c2,
  22 00104                       \textcolor{keywordtype}{int} max\_w,
  23 00105                       \textcolor{keywordtype}{char} *cstruc,
  24 00106                       \textcolor{keywordtype}{int} incr3,
  25 00107                       \textcolor{keywordtype}{int} incr5);
  26 00108
  27 00112 \textcolor{keywordtype}{void} \hyperlink{group__up__cofold_gadde308fd5f696dc271b1532aa96fd12f}{free\_interact}(\hyperlink{structinteract}{interact} *pin);
  28 00113
  29 00117 \textcolor{keywordtype}{int} Up\_plot(\hyperlink{structpu__contrib}{pu\_contrib} *p\_c,
  30 00118             \hyperlink{structpu__contrib}{pu\_contrib} *p\_c\_sh,
  31 00119             \hyperlink{structinteract}{interact} *pint,
  32 00120             \textcolor{keywordtype}{char} *ofile,
  33 00121             \textcolor{keywordtype}{int} **unpaired\_values,
  34 00122             \textcolor{keywordtype}{char} *select\_contrib,
  35 00123             \textcolor{keywordtype}{char} *head,
  36 00124             \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} mode);
  37 00125
  38 00129 \hyperlink{structpu__contrib}{pu\_contrib}  *get\_pu\_contrib\_struct( \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n,
  39 00130                                     \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} w);
  40 00131
  41 00135 \textcolor{keywordtype}{void}        \hyperlink{group__up__cofold_gac20bd61824981d45ce0dc9934aa56df8}{free\_pu\_contrib\_struct}(\hyperlink{structpu__contrib}{pu\_contrib} *pu);
  42 00136
  43 00141 \textcolor{preprocessor}{#endif}
  44 \end{DoxyCode}