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\indexentry{R\discretionary {-}{}{}N\discretionary {-}{}{}A Secondary Structure Folding@{R\discretionary {-}{}{}N\discretionary {-}{}{}A Secondary Structure Folding}|hyperpage}{19}
\indexentry{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures@{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures}|hyperpage}{22}
\indexentry{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures@{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures}!fold\discretionary {-}{}{}\_\discretionary {-}{}{}par@{fold\discretionary {-}{}{}\_\discretionary {-}{}{}par}|hyperpage}{23}
\indexentry{fold\discretionary {-}{}{}\_\discretionary {-}{}{}par@{fold\discretionary {-}{}{}\_\discretionary {-}{}{}par}!Calculating Minimum Free Energy (MFE) Structures@{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures}|hyperpage}{23}
\indexentry{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures@{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures}!fold@{fold}|hyperpage}{23}
\indexentry{fold@{fold}!Calculating Minimum Free Energy (MFE) Structures@{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures}|hyperpage}{23}
\indexentry{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures@{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures}!circfold@{circfold}|hyperpage}{24}
\indexentry{circfold@{circfold}!Calculating Minimum Free Energy (MFE) Structures@{Calculating Minimum Free Energy (\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E) Structures}|hyperpage}{24}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{25}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}!pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par}|hyperpage}{26}
\indexentry{pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par}!Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{26}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}!pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold}|hyperpage}{27}
\indexentry{pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold}!Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{27}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}!pf\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}fold}|hyperpage}{28}
\indexentry{pf\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}fold}!Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{28}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}!free\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{free\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}|hyperpage}{29}
\indexentry{free\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{free\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}!Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{29}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}!update\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params@{update\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params}|hyperpage}{29}
\indexentry{update\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params@{update\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params}!Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{29}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}!export\discretionary {-}{}{}\_\discretionary {-}{}{}bppm@{export\discretionary {-}{}{}\_\discretionary {-}{}{}bppm}|hyperpage}{29}
\indexentry{export\discretionary {-}{}{}\_\discretionary {-}{}{}bppm@{export\discretionary {-}{}{}\_\discretionary {-}{}{}bppm}!Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{29}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}!assign\discretionary {-}{}{}\_\discretionary {-}{}{}plist\discretionary {-}{}{}\_\discretionary {-}{}{}from\discretionary {-}{}{}\_\discretionary {-}{}{}pr@{assign\discretionary {-}{}{}\_\discretionary {-}{}{}plist\discretionary {-}{}{}\_\discretionary {-}{}{}from\discretionary {-}{}{}\_\discretionary {-}{}{}pr}|hyperpage}{29}
\indexentry{assign\discretionary {-}{}{}\_\discretionary {-}{}{}plist\discretionary {-}{}{}\_\discretionary {-}{}{}from\discretionary {-}{}{}\_\discretionary {-}{}{}pr@{assign\discretionary {-}{}{}\_\discretionary {-}{}{}plist\discretionary {-}{}{}\_\discretionary {-}{}{}from\discretionary {-}{}{}\_\discretionary {-}{}{}pr}!Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{29}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}!get\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{get\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}|hyperpage}{30}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{get\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}!Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{30}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}!mean\discretionary {-}{}{}\_\discretionary {-}{}{}bp\discretionary {-}{}{}\_\discretionary {-}{}{}distance@{mean\discretionary {-}{}{}\_\discretionary {-}{}{}bp\discretionary {-}{}{}\_\discretionary {-}{}{}distance}|hyperpage}{30}
\indexentry{mean\discretionary {-}{}{}\_\discretionary {-}{}{}bp\discretionary {-}{}{}\_\discretionary {-}{}{}distance@{mean\discretionary {-}{}{}\_\discretionary {-}{}{}bp\discretionary {-}{}{}\_\discretionary {-}{}{}distance}!Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{30}
\indexentry{Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}!mean\discretionary {-}{}{}\_\discretionary {-}{}{}bp\discretionary {-}{}{}\_\discretionary {-}{}{}distance\discretionary {-}{}{}\_\discretionary {-}{}{}pr@{mean\discretionary {-}{}{}\_\discretionary {-}{}{}bp\discretionary {-}{}{}\_\discretionary {-}{}{}distance\discretionary {-}{}{}\_\discretionary {-}{}{}pr}|hyperpage}{31}
\indexentry{mean\discretionary {-}{}{}\_\discretionary {-}{}{}bp\discretionary {-}{}{}\_\discretionary {-}{}{}distance\discretionary {-}{}{}\_\discretionary {-}{}{}pr@{mean\discretionary {-}{}{}\_\discretionary {-}{}{}bp\discretionary {-}{}{}\_\discretionary {-}{}{}distance\discretionary {-}{}{}\_\discretionary {-}{}{}pr}!Calculating Partition Functions and Pair Probabilities@{Calculating Partition Functions and Pair Probabilities}|hyperpage}{31}
\indexentry{Compute the structure with maximum expected accuracy (\discretionary {-}{}{}M\discretionary {-}{}{}E\discretionary {-}{}{}A)@{Compute the structure with maximum expected accuracy (\discretionary {-}{}{}M\discretionary {-}{}{}E\discretionary {-}{}{}A)}|hyperpage}{32}
\indexentry{Compute the centroid structure@{Compute the centroid structure}|hyperpage}{33}
\indexentry{Compute the centroid structure@{Compute the centroid structure}!get\discretionary {-}{}{}\_\discretionary {-}{}{}centroid\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pl@{get\discretionary {-}{}{}\_\discretionary {-}{}{}centroid\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pl}|hyperpage}{33}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}centroid\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pl@{get\discretionary {-}{}{}\_\discretionary {-}{}{}centroid\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pl}!Compute the centroid structure@{Compute the centroid structure}|hyperpage}{33}
\indexentry{Compute the centroid structure@{Compute the centroid structure}!get\discretionary {-}{}{}\_\discretionary {-}{}{}centroid\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pr@{get\discretionary {-}{}{}\_\discretionary {-}{}{}centroid\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pr}|hyperpage}{33}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}centroid\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pr@{get\discretionary {-}{}{}\_\discretionary {-}{}{}centroid\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pr}!Compute the centroid structure@{Compute the centroid structure}|hyperpage}{33}
\indexentry{Enumerating Suboptimal Structures@{Enumerating Suboptimal Structures}|hyperpage}{35}
\indexentry{Suboptimal structures according to Zuker et al. 1989@{Suboptimal structures according to Zuker et al. 1989}|hyperpage}{36}
\indexentry{Suboptimal structures according to Zuker et al. 1989@{Suboptimal structures according to Zuker et al. 1989}!zukersubopt@{zukersubopt}|hyperpage}{36}
\indexentry{zukersubopt@{zukersubopt}!Suboptimal structures according to Zuker et al. 1989@{Suboptimal structures according to Zuker et al. 1989}|hyperpage}{36}
\indexentry{Suboptimal structures within an energy band arround the M\discretionary {-}{}{}F\discretionary {-}{}{}E@{Suboptimal structures within an energy band arround the M\discretionary {-}{}{}F\discretionary {-}{}{}E}|hyperpage}{37}
\indexentry{Suboptimal structures within an energy band arround the M\discretionary {-}{}{}F\discretionary {-}{}{}E@{Suboptimal structures within an energy band arround the M\discretionary {-}{}{}F\discretionary {-}{}{}E}!subopt@{subopt}|hyperpage}{37}
\indexentry{subopt@{subopt}!Suboptimal structures within an energy band arround the MFE@{Suboptimal structures within an energy band arround the M\discretionary {-}{}{}F\discretionary {-}{}{}E}|hyperpage}{37}
\indexentry{Suboptimal structures within an energy band arround the M\discretionary {-}{}{}F\discretionary {-}{}{}E@{Suboptimal structures within an energy band arround the M\discretionary {-}{}{}F\discretionary {-}{}{}E}!subopt\discretionary {-}{}{}\_\discretionary {-}{}{}circ@{subopt\discretionary {-}{}{}\_\discretionary {-}{}{}circ}|hyperpage}{38}
\indexentry{subopt\discretionary {-}{}{}\_\discretionary {-}{}{}circ@{subopt\discretionary {-}{}{}\_\discretionary {-}{}{}circ}!Suboptimal structures within an energy band arround the MFE@{Suboptimal structures within an energy band arround the M\discretionary {-}{}{}F\discretionary {-}{}{}E}|hyperpage}{38}
\indexentry{Stochastic backtracking in the Ensemble@{Stochastic backtracking in the Ensemble}|hyperpage}{39}
\indexentry{Stochastic backtracking in the Ensemble@{Stochastic backtracking in the Ensemble}!pbacktrack@{pbacktrack}|hyperpage}{39}
\indexentry{pbacktrack@{pbacktrack}!Stochastic backtracking in the Ensemble@{Stochastic backtracking in the Ensemble}|hyperpage}{39}
\indexentry{Stochastic backtracking in the Ensemble@{Stochastic backtracking in the Ensemble}!pbacktrack\discretionary {-}{}{}\_\discretionary {-}{}{}circ@{pbacktrack\discretionary {-}{}{}\_\discretionary {-}{}{}circ}|hyperpage}{40}
\indexentry{pbacktrack\discretionary {-}{}{}\_\discretionary {-}{}{}circ@{pbacktrack\discretionary {-}{}{}\_\discretionary {-}{}{}circ}!Stochastic backtracking in the Ensemble@{Stochastic backtracking in the Ensemble}|hyperpage}{40}
\indexentry{Stochastic backtracking in the Ensemble@{Stochastic backtracking in the Ensemble}!st\discretionary {-}{}{}\_\discretionary {-}{}{}back@{st\discretionary {-}{}{}\_\discretionary {-}{}{}back}|hyperpage}{40}
\indexentry{st\discretionary {-}{}{}\_\discretionary {-}{}{}back@{st\discretionary {-}{}{}\_\discretionary {-}{}{}back}!Stochastic backtracking in the Ensemble@{Stochastic backtracking in the Ensemble}|hyperpage}{40}
\indexentry{Calculate Secondary Structures of two R\discretionary {-}{}{}N\discretionary {-}{}{}As upon Dimerization@{Calculate Secondary Structures of two R\discretionary {-}{}{}N\discretionary {-}{}{}As upon Dimerization}|hyperpage}{41}
\indexentry{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences}|hyperpage}{42}
\indexentry{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences}!cofold@{cofold}|hyperpage}{42}
\indexentry{cofold@{cofold}!MFE Structures of two hybridized Sequences@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences}|hyperpage}{42}
\indexentry{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences}!export\discretionary {-}{}{}\_\discretionary {-}{}{}cofold\discretionary {-}{}{}\_\discretionary {-}{}{}arrays\discretionary {-}{}{}\_\discretionary {-}{}{}gq@{export\discretionary {-}{}{}\_\discretionary {-}{}{}cofold\discretionary {-}{}{}\_\discretionary {-}{}{}arrays\discretionary {-}{}{}\_\discretionary {-}{}{}gq}|hyperpage}{43}
\indexentry{export\discretionary {-}{}{}\_\discretionary {-}{}{}cofold\discretionary {-}{}{}\_\discretionary {-}{}{}arrays\discretionary {-}{}{}\_\discretionary {-}{}{}gq@{export\discretionary {-}{}{}\_\discretionary {-}{}{}cofold\discretionary {-}{}{}\_\discretionary {-}{}{}arrays\discretionary {-}{}{}\_\discretionary {-}{}{}gq}!MFE Structures of two hybridized Sequences@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences}|hyperpage}{43}
\indexentry{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences}!export\discretionary {-}{}{}\_\discretionary {-}{}{}cofold\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{export\discretionary {-}{}{}\_\discretionary {-}{}{}cofold\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}|hyperpage}{43}
\indexentry{export\discretionary {-}{}{}\_\discretionary {-}{}{}cofold\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{export\discretionary {-}{}{}\_\discretionary {-}{}{}cofold\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}!MFE Structures of two hybridized Sequences@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Structures of two hybridized Sequences}|hyperpage}{43}
\indexentry{Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}|hyperpage}{44}
\indexentry{Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}!co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold}|hyperpage}{45}
\indexentry{co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold}!Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}|hyperpage}{45}
\indexentry{Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}!co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par@{co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par}|hyperpage}{45}
\indexentry{co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par@{co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par}!Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}|hyperpage}{45}
\indexentry{Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}!export\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}bppm@{export\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}bppm}|hyperpage}{46}
\indexentry{export\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}bppm@{export\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}bppm}!Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}|hyperpage}{46}
\indexentry{Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}!update\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params@{update\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params}|hyperpage}{46}
\indexentry{update\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params@{update\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params}!Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}|hyperpage}{46}
\indexentry{Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}!update\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params\discretionary {-}{}{}\_\discretionary {-}{}{}par@{update\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params\discretionary {-}{}{}\_\discretionary {-}{}{}par}|hyperpage}{46}
\indexentry{update\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params\discretionary {-}{}{}\_\discretionary {-}{}{}par@{update\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params\discretionary {-}{}{}\_\discretionary {-}{}{}par}!Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}|hyperpage}{46}
\indexentry{Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}!compute\discretionary {-}{}{}\_\discretionary {-}{}{}probabilities@{compute\discretionary {-}{}{}\_\discretionary {-}{}{}probabilities}|hyperpage}{47}
\indexentry{compute\discretionary {-}{}{}\_\discretionary {-}{}{}probabilities@{compute\discretionary {-}{}{}\_\discretionary {-}{}{}probabilities}!Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}|hyperpage}{47}
\indexentry{Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}!get\discretionary {-}{}{}\_\discretionary {-}{}{}concentrations@{get\discretionary {-}{}{}\_\discretionary {-}{}{}concentrations}|hyperpage}{47}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}concentrations@{get\discretionary {-}{}{}\_\discretionary {-}{}{}concentrations}!Partition Function for two hybridized Sequences@{Partition Function for two hybridized Sequences}|hyperpage}{47}
\indexentry{Partition Function for two hybridized Sequences as a stepwise Process@{Partition Function for two hybridized Sequences as a stepwise Process}|hyperpage}{48}
\indexentry{Partition Function for two hybridized Sequences as a stepwise Process@{Partition Function for two hybridized Sequences as a stepwise Process}!pf\discretionary {-}{}{}\_\discretionary {-}{}{}unstru@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}unstru}|hyperpage}{48}
\indexentry{pf\discretionary {-}{}{}\_\discretionary {-}{}{}unstru@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}unstru}!Partition Function for two hybridized Sequences as a stepwise Process@{Partition Function for two hybridized Sequences as a stepwise Process}|hyperpage}{48}
\indexentry{Partition Function for two hybridized Sequences as a stepwise Process@{Partition Function for two hybridized Sequences as a stepwise Process}!pf\discretionary {-}{}{}\_\discretionary {-}{}{}interact@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}interact}|hyperpage}{49}
\indexentry{pf\discretionary {-}{}{}\_\discretionary {-}{}{}interact@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}interact}!Partition Function for two hybridized Sequences as a stepwise Process@{Partition Function for two hybridized Sequences as a stepwise Process}|hyperpage}{49}
\indexentry{Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}|hyperpage}{50}
\indexentry{Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}!get\discretionary {-}{}{}\_\discretionary {-}{}{}mpi@{get\discretionary {-}{}{}\_\discretionary {-}{}{}mpi}|hyperpage}{51}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}mpi@{get\discretionary {-}{}{}\_\discretionary {-}{}{}mpi}!Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}|hyperpage}{51}
\indexentry{Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}!energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}alistruct@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}alistruct}|hyperpage}{51}
\indexentry{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}alistruct@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}alistruct}!Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}|hyperpage}{51}
\indexentry{Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}!encode\discretionary {-}{}{}\_\discretionary {-}{}{}ali\discretionary {-}{}{}\_\discretionary {-}{}{}sequence@{encode\discretionary {-}{}{}\_\discretionary {-}{}{}ali\discretionary {-}{}{}\_\discretionary {-}{}{}sequence}|hyperpage}{51}
\indexentry{encode\discretionary {-}{}{}\_\discretionary {-}{}{}ali\discretionary {-}{}{}\_\discretionary {-}{}{}sequence@{encode\discretionary {-}{}{}\_\discretionary {-}{}{}ali\discretionary {-}{}{}\_\discretionary {-}{}{}sequence}!Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}|hyperpage}{51}
\indexentry{Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}!alloc\discretionary {-}{}{}\_\discretionary {-}{}{}sequence\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{alloc\discretionary {-}{}{}\_\discretionary {-}{}{}sequence\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}|hyperpage}{52}
\indexentry{alloc\discretionary {-}{}{}\_\discretionary {-}{}{}sequence\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{alloc\discretionary {-}{}{}\_\discretionary {-}{}{}sequence\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}!Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}|hyperpage}{52}
\indexentry{Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}!free\discretionary {-}{}{}\_\discretionary {-}{}{}sequence\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{free\discretionary {-}{}{}\_\discretionary {-}{}{}sequence\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}|hyperpage}{52}
\indexentry{free\discretionary {-}{}{}\_\discretionary {-}{}{}sequence\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{free\discretionary {-}{}{}\_\discretionary {-}{}{}sequence\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}!Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}|hyperpage}{52}
\indexentry{Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}!get\discretionary {-}{}{}\_\discretionary {-}{}{}alipf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{get\discretionary {-}{}{}\_\discretionary {-}{}{}alipf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}|hyperpage}{53}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}alipf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays@{get\discretionary {-}{}{}\_\discretionary {-}{}{}alipf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}!Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}|hyperpage}{53}
\indexentry{Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}!cv\discretionary {-}{}{}\_\discretionary {-}{}{}fact@{cv\discretionary {-}{}{}\_\discretionary {-}{}{}fact}|hyperpage}{53}
\indexentry{cv\discretionary {-}{}{}\_\discretionary {-}{}{}fact@{cv\discretionary {-}{}{}\_\discretionary {-}{}{}fact}!Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}|hyperpage}{53}
\indexentry{Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}!nc\discretionary {-}{}{}\_\discretionary {-}{}{}fact@{nc\discretionary {-}{}{}\_\discretionary {-}{}{}fact}|hyperpage}{53}
\indexentry{nc\discretionary {-}{}{}\_\discretionary {-}{}{}fact@{nc\discretionary {-}{}{}\_\discretionary {-}{}{}fact}!Predicting Consensus Structures from Alignment(s)@{Predicting Consensus Structures from Alignment(s)}|hyperpage}{53}
\indexentry{M\discretionary {-}{}{}F\discretionary {-}{}{}E Consensus Structures for Sequence Alignment(s)@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Consensus Structures for Sequence Alignment(s)}|hyperpage}{54}
\indexentry{M\discretionary {-}{}{}F\discretionary {-}{}{}E Consensus Structures for Sequence Alignment(s)@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Consensus Structures for Sequence Alignment(s)}!alifold@{alifold}|hyperpage}{54}
\indexentry{alifold@{alifold}!MFE Consensus Structures for Sequence Alignment(s)@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Consensus Structures for Sequence Alignment(s)}|hyperpage}{54}
\indexentry{M\discretionary {-}{}{}F\discretionary {-}{}{}E Consensus Structures for Sequence Alignment(s)@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Consensus Structures for Sequence Alignment(s)}!circalifold@{circalifold}|hyperpage}{54}
\indexentry{circalifold@{circalifold}!MFE Consensus Structures for Sequence Alignment(s)@{M\discretionary {-}{}{}F\discretionary {-}{}{}E Consensus Structures for Sequence Alignment(s)}|hyperpage}{54}
\indexentry{Partition Function and Base Pair Probabilities for Sequence Alignment(s)@{Partition Function and Base Pair Probabilities for Sequence Alignment(s)}|hyperpage}{56}
\indexentry{Partition Function and Base Pair Probabilities for Sequence Alignment(s)@{Partition Function and Base Pair Probabilities for Sequence Alignment(s)}!alipf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par@{alipf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par}|hyperpage}{56}
\indexentry{alipf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par@{alipf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par}!Partition Function and Base Pair Probabilities for Sequence Alignment(s)@{Partition Function and Base Pair Probabilities for Sequence Alignment(s)}|hyperpage}{56}
\indexentry{Partition Function and Base Pair Probabilities for Sequence Alignment(s)@{Partition Function and Base Pair Probabilities for Sequence Alignment(s)}!alipf\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{alipf\discretionary {-}{}{}\_\discretionary {-}{}{}fold}|hyperpage}{56}
\indexentry{alipf\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{alipf\discretionary {-}{}{}\_\discretionary {-}{}{}fold}!Partition Function and Base Pair Probabilities for Sequence Alignment(s)@{Partition Function and Base Pair Probabilities for Sequence Alignment(s)}|hyperpage}{56}
\indexentry{Partition Function and Base Pair Probabilities for Sequence Alignment(s)@{Partition Function and Base Pair Probabilities for Sequence Alignment(s)}!alipf\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{alipf\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}fold}|hyperpage}{57}
\indexentry{alipf\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{alipf\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}fold}!Partition Function and Base Pair Probabilities for Sequence Alignment(s)@{Partition Function and Base Pair Probabilities for Sequence Alignment(s)}|hyperpage}{57}
\indexentry{Partition Function and Base Pair Probabilities for Sequence Alignment(s)@{Partition Function and Base Pair Probabilities for Sequence Alignment(s)}!export\discretionary {-}{}{}\_\discretionary {-}{}{}ali\discretionary {-}{}{}\_\discretionary {-}{}{}bppm@{export\discretionary {-}{}{}\_\discretionary {-}{}{}ali\discretionary {-}{}{}\_\discretionary {-}{}{}bppm}|hyperpage}{57}
\indexentry{export\discretionary {-}{}{}\_\discretionary {-}{}{}ali\discretionary {-}{}{}\_\discretionary {-}{}{}bppm@{export\discretionary {-}{}{}\_\discretionary {-}{}{}ali\discretionary {-}{}{}\_\discretionary {-}{}{}bppm}!Partition Function and Base Pair Probabilities for Sequence Alignment(s)@{Partition Function and Base Pair Probabilities for Sequence Alignment(s)}|hyperpage}{57}
\indexentry{Stochastic Backtracking of Consensus Structures from Sequence Alignment(s)@{Stochastic Backtracking of Consensus Structures from Sequence Alignment(s)}|hyperpage}{58}
\indexentry{Stochastic Backtracking of Consensus Structures from Sequence Alignment(s)@{Stochastic Backtracking of Consensus Structures from Sequence Alignment(s)}!alipbacktrack@{alipbacktrack}|hyperpage}{58}
\indexentry{alipbacktrack@{alipbacktrack}!Stochastic Backtracking of Consensus Structures from Sequence Alignment(s)@{Stochastic Backtracking of Consensus Structures from Sequence Alignment(s)}|hyperpage}{58}
\indexentry{Predicting Locally stable structures of large sequences@{Predicting Locally stable structures of large sequences}|hyperpage}{59}
\indexentry{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E structure Prediction and Z-\/scores@{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E structure Prediction and Z-\/scores}|hyperpage}{60}
\indexentry{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E structure Prediction and Z-\/scores@{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E structure Prediction and Z-\/scores}!Lfold@{Lfold}|hyperpage}{60}
\indexentry{Lfold@{Lfold}!Local MFE structure Prediction and Z-scores@{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E structure Prediction and Z-\/scores}|hyperpage}{60}
\indexentry{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E structure Prediction and Z-\/scores@{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E structure Prediction and Z-\/scores}!Lfoldz@{Lfoldz}|hyperpage}{60}
\indexentry{Lfoldz@{Lfoldz}!Local MFE structure Prediction and Z-scores@{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E structure Prediction and Z-\/scores}|hyperpage}{60}
\indexentry{Partition functions for locally stable secondary structures@{Partition functions for locally stable secondary structures}|hyperpage}{61}
\indexentry{Partition functions for locally stable secondary structures@{Partition functions for locally stable secondary structures}!update\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params\discretionary {-}{}{}L\discretionary {-}{}{}P@{update\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params\discretionary {-}{}{}L\discretionary {-}{}{}P}|hyperpage}{61}
\indexentry{update\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params\discretionary {-}{}{}L\discretionary {-}{}{}P@{update\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params\discretionary {-}{}{}L\discretionary {-}{}{}P}!Partition functions for locally stable secondary structures@{Partition functions for locally stable secondary structures}|hyperpage}{61}
\indexentry{Partition functions for locally stable secondary structures@{Partition functions for locally stable secondary structures}!pfl\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{pfl\discretionary {-}{}{}\_\discretionary {-}{}{}fold}|hyperpage}{61}
\indexentry{pfl\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{pfl\discretionary {-}{}{}\_\discretionary {-}{}{}fold}!Partition functions for locally stable secondary structures@{Partition functions for locally stable secondary structures}|hyperpage}{61}
\indexentry{Partition functions for locally stable secondary structures@{Partition functions for locally stable secondary structures}!putoutp\discretionary {-}{}{}U\discretionary {-}{}{}\_\discretionary {-}{}{}prob@{putoutp\discretionary {-}{}{}U\discretionary {-}{}{}\_\discretionary {-}{}{}prob}|hyperpage}{62}
\indexentry{putoutp\discretionary {-}{}{}U\discretionary {-}{}{}\_\discretionary {-}{}{}prob@{putoutp\discretionary {-}{}{}U\discretionary {-}{}{}\_\discretionary {-}{}{}prob}!Partition functions for locally stable secondary structures@{Partition functions for locally stable secondary structures}|hyperpage}{62}
\indexentry{Partition functions for locally stable secondary structures@{Partition functions for locally stable secondary structures}!putoutp\discretionary {-}{}{}U\discretionary {-}{}{}\_\discretionary {-}{}{}prob\discretionary {-}{}{}\_\discretionary {-}{}{}bin@{putoutp\discretionary {-}{}{}U\discretionary {-}{}{}\_\discretionary {-}{}{}prob\discretionary {-}{}{}\_\discretionary {-}{}{}bin}|hyperpage}{62}
\indexentry{putoutp\discretionary {-}{}{}U\discretionary {-}{}{}\_\discretionary {-}{}{}prob\discretionary {-}{}{}\_\discretionary {-}{}{}bin@{putoutp\discretionary {-}{}{}U\discretionary {-}{}{}\_\discretionary {-}{}{}prob\discretionary {-}{}{}\_\discretionary {-}{}{}bin}!Partition functions for locally stable secondary structures@{Partition functions for locally stable secondary structures}|hyperpage}{62}
\indexentry{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E consensus structures for Sequence Alignments@{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E consensus structures for Sequence Alignments}|hyperpage}{63}
\indexentry{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E consensus structures for Sequence Alignments@{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E consensus structures for Sequence Alignments}!ali\discretionary {-}{}{}Lfold@{ali\discretionary {-}{}{}Lfold}|hyperpage}{63}
\indexentry{ali\discretionary {-}{}{}Lfold@{ali\discretionary {-}{}{}Lfold}!Local MFE consensus structures for Sequence Alignments@{Local M\discretionary {-}{}{}F\discretionary {-}{}{}E consensus structures for Sequence Alignments}|hyperpage}{63}
\indexentry{Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}|hyperpage}{64}
\indexentry{Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}!scale\discretionary {-}{}{}\_\discretionary {-}{}{}parameters@{scale\discretionary {-}{}{}\_\discretionary {-}{}{}parameters}|hyperpage}{65}
\indexentry{scale\discretionary {-}{}{}\_\discretionary {-}{}{}parameters@{scale\discretionary {-}{}{}\_\discretionary {-}{}{}parameters}!Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}|hyperpage}{65}
\indexentry{Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}!get\discretionary {-}{}{}\_\discretionary {-}{}{}scaled\discretionary {-}{}{}\_\discretionary {-}{}{}parameters@{get\discretionary {-}{}{}\_\discretionary {-}{}{}scaled\discretionary {-}{}{}\_\discretionary {-}{}{}parameters}|hyperpage}{65}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}scaled\discretionary {-}{}{}\_\discretionary {-}{}{}parameters@{get\discretionary {-}{}{}\_\discretionary {-}{}{}scaled\discretionary {-}{}{}\_\discretionary {-}{}{}parameters}!Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}|hyperpage}{65}
\indexentry{Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}!get\discretionary {-}{}{}\_\discretionary {-}{}{}scaled\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}parameters@{get\discretionary {-}{}{}\_\discretionary {-}{}{}scaled\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}parameters}|hyperpage}{65}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}scaled\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}parameters@{get\discretionary {-}{}{}\_\discretionary {-}{}{}scaled\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}parameters}!Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}|hyperpage}{65}
\indexentry{Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}!get\discretionary {-}{}{}\_\discretionary {-}{}{}boltzmann\discretionary {-}{}{}\_\discretionary {-}{}{}factors@{get\discretionary {-}{}{}\_\discretionary {-}{}{}boltzmann\discretionary {-}{}{}\_\discretionary {-}{}{}factors}|hyperpage}{65}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}boltzmann\discretionary {-}{}{}\_\discretionary {-}{}{}factors@{get\discretionary {-}{}{}\_\discretionary {-}{}{}boltzmann\discretionary {-}{}{}\_\discretionary {-}{}{}factors}!Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}|hyperpage}{65}
\indexentry{Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}!get\discretionary {-}{}{}\_\discretionary {-}{}{}boltzmann\discretionary {-}{}{}\_\discretionary {-}{}{}factor\discretionary {-}{}{}\_\discretionary {-}{}{}copy@{get\discretionary {-}{}{}\_\discretionary {-}{}{}boltzmann\discretionary {-}{}{}\_\discretionary {-}{}{}factor\discretionary {-}{}{}\_\discretionary {-}{}{}copy}|hyperpage}{66}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}boltzmann\discretionary {-}{}{}\_\discretionary {-}{}{}factor\discretionary {-}{}{}\_\discretionary {-}{}{}copy@{get\discretionary {-}{}{}\_\discretionary {-}{}{}boltzmann\discretionary {-}{}{}\_\discretionary {-}{}{}factor\discretionary {-}{}{}\_\discretionary {-}{}{}copy}!Change and Precalculate Energy Parameter Sets and Boltzmann Factors@{Change and Precalculate Energy Parameter Sets and Boltzmann Factors}|hyperpage}{66}
\indexentry{Reading/\discretionary {-}{}{}Writing energy parameter sets from/to File@{Reading/\discretionary {-}{}{}Writing energy parameter sets from/to File}|hyperpage}{67}
\indexentry{Reading/\discretionary {-}{}{}Writing energy parameter sets from/to File@{Reading/\discretionary {-}{}{}Writing energy parameter sets from/to File}!read\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file@{read\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file}|hyperpage}{67}
\indexentry{read\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file@{read\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file}!Reading/Writing energy parameter sets from/to File@{Reading/\discretionary {-}{}{}Writing energy parameter sets from/to File}|hyperpage}{67}
\indexentry{Reading/\discretionary {-}{}{}Writing energy parameter sets from/to File@{Reading/\discretionary {-}{}{}Writing energy parameter sets from/to File}!write\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file@{write\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file}|hyperpage}{67}
\indexentry{write\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file@{write\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file}!Reading/Writing energy parameter sets from/to File@{Reading/\discretionary {-}{}{}Writing energy parameter sets from/to File}|hyperpage}{67}
\indexentry{Converting energy parameter files@{Converting energy parameter files}|hyperpage}{69}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}A\discretionary {-}{}{}L\discretionary {-}{}{}L@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}A\discretionary {-}{}{}L\discretionary {-}{}{}L}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}A\discretionary {-}{}{}L\discretionary {-}{}{}L@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}A\discretionary {-}{}{}L\discretionary {-}{}{}L}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}S\discretionary {-}{}{}T\discretionary {-}{}{}A\discretionary {-}{}{}C\discretionary {-}{}{}K@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}S\discretionary {-}{}{}T\discretionary {-}{}{}A\discretionary {-}{}{}C\discretionary {-}{}{}K}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}S\discretionary {-}{}{}T\discretionary {-}{}{}A\discretionary {-}{}{}C\discretionary {-}{}{}K@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}S\discretionary {-}{}{}T\discretionary {-}{}{}A\discretionary {-}{}{}C\discretionary {-}{}{}K}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}1\discretionary {-}{}{}N@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}1\discretionary {-}{}{}N}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}1\discretionary {-}{}{}N@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}1\discretionary {-}{}{}N}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}23@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}23}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}23@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}23}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}U\discretionary {-}{}{}L\discretionary {-}{}{}T\discretionary {-}{}{}I@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}U\discretionary {-}{}{}L\discretionary {-}{}{}T\discretionary {-}{}{}I}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}U\discretionary {-}{}{}L\discretionary {-}{}{}T\discretionary {-}{}{}I@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}U\discretionary {-}{}{}L\discretionary {-}{}{}T\discretionary {-}{}{}I}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}E\discretionary {-}{}{}X\discretionary {-}{}{}T@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}E\discretionary {-}{}{}X\discretionary {-}{}{}T}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}E\discretionary {-}{}{}X\discretionary {-}{}{}T@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}M\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}E\discretionary {-}{}{}X\discretionary {-}{}{}T}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}G\discretionary {-}{}{}L\discretionary {-}{}{}E5@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}G\discretionary {-}{}{}L\discretionary {-}{}{}E5}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}G\discretionary {-}{}{}L\discretionary {-}{}{}E5@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}G\discretionary {-}{}{}L\discretionary {-}{}{}E5}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}G\discretionary {-}{}{}L\discretionary {-}{}{}E3@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}G\discretionary {-}{}{}L\discretionary {-}{}{}E3}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}G\discretionary {-}{}{}L\discretionary {-}{}{}E3@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}G\discretionary {-}{}{}L\discretionary {-}{}{}E3}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}11@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}11}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}11@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}11}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}21@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}21}|hyperpage}{70}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}21@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}21}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{70}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}22@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}22}|hyperpage}{71}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}22@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}22}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{71}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}B\discretionary {-}{}{}U\discretionary {-}{}{}L\discretionary {-}{}{}G\discretionary {-}{}{}E@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}B\discretionary {-}{}{}U\discretionary {-}{}{}L\discretionary {-}{}{}G\discretionary {-}{}{}E}|hyperpage}{71}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}B\discretionary {-}{}{}U\discretionary {-}{}{}L\discretionary {-}{}{}G\discretionary {-}{}{}E@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}B\discretionary {-}{}{}U\discretionary {-}{}{}L\discretionary {-}{}{}G\discretionary {-}{}{}E}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{71}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T}|hyperpage}{71}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}T}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{71}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}L@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}L}|hyperpage}{71}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}L@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}L}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{71}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}I\discretionary {-}{}{}S\discretionary {-}{}{}C@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}I\discretionary {-}{}{}S\discretionary {-}{}{}C}|hyperpage}{71}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}I\discretionary {-}{}{}S\discretionary {-}{}{}C@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}I\discretionary {-}{}{}S\discretionary {-}{}{}C}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{71}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}S\discretionary {-}{}{}P\discretionary {-}{}{}E\discretionary {-}{}{}C\discretionary {-}{}{}I\discretionary {-}{}{}A\discretionary {-}{}{}L\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}S\discretionary {-}{}{}P\discretionary {-}{}{}E\discretionary {-}{}{}C\discretionary {-}{}{}I\discretionary {-}{}{}A\discretionary {-}{}{}L\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P}|hyperpage}{71}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}S\discretionary {-}{}{}P\discretionary {-}{}{}E\discretionary {-}{}{}C\discretionary {-}{}{}I\discretionary {-}{}{}A\discretionary {-}{}{}L\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}S\discretionary {-}{}{}P\discretionary {-}{}{}E\discretionary {-}{}{}C\discretionary {-}{}{}I\discretionary {-}{}{}A\discretionary {-}{}{}L\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}H\discretionary {-}{}{}P}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{71}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}V\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}L\discretionary {-}{}{}L\discretionary {-}{}{}A@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}V\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}L\discretionary {-}{}{}L\discretionary {-}{}{}A}|hyperpage}{71}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}V\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}L\discretionary {-}{}{}L\discretionary {-}{}{}A@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}V\discretionary {-}{}{}A\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}L\discretionary {-}{}{}L\discretionary {-}{}{}A}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{71}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}O@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}O}|hyperpage}{71}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}O@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}I\discretionary {-}{}{}O}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{71}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}U\discretionary {-}{}{}M\discretionary {-}{}{}P@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}U\discretionary {-}{}{}M\discretionary {-}{}{}P}|hyperpage}{71}
\indexentry{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}U\discretionary {-}{}{}M\discretionary {-}{}{}P@{V\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}C\discretionary {-}{}{}O\discretionary {-}{}{}N\discretionary {-}{}{}V\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}O\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}P\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}D\discretionary {-}{}{}U\discretionary {-}{}{}M\discretionary {-}{}{}P}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{71}
\indexentry{Converting energy parameter files@{Converting energy parameter files}!convert\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file@{convert\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file}|hyperpage}{71}
\indexentry{convert\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file@{convert\discretionary {-}{}{}\_\discretionary {-}{}{}parameter\discretionary {-}{}{}\_\discretionary {-}{}{}file}!Converting energy parameter files@{Converting energy parameter files}|hyperpage}{71}
\indexentry{Energy evaluation@{Energy evaluation}|hyperpage}{73}
\indexentry{Energy evaluation@{Energy evaluation}!energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}structure@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}structure}|hyperpage}{73}
\indexentry{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}structure@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}structure}!Energy evaluation@{Energy evaluation}|hyperpage}{73}
\indexentry{Energy evaluation@{Energy evaluation}!energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}par@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}par}|hyperpage}{74}
\indexentry{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}par@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}par}!Energy evaluation@{Energy evaluation}|hyperpage}{74}
\indexentry{Energy evaluation@{Energy evaluation}!energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}structure@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}structure}|hyperpage}{74}
\indexentry{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}structure@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}structure}!Energy evaluation@{Energy evaluation}|hyperpage}{74}
\indexentry{Energy evaluation@{Energy evaluation}!energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}par@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}par}|hyperpage}{75}
\indexentry{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}par@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}par}!Energy evaluation@{Energy evaluation}|hyperpage}{75}
\indexentry{Energy evaluation@{Energy evaluation}!energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}structure\discretionary {-}{}{}\_\discretionary {-}{}{}pt@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}structure\discretionary {-}{}{}\_\discretionary {-}{}{}pt}|hyperpage}{75}
\indexentry{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}structure\discretionary {-}{}{}\_\discretionary {-}{}{}pt@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}structure\discretionary {-}{}{}\_\discretionary {-}{}{}pt}!Energy evaluation@{Energy evaluation}|hyperpage}{75}
\indexentry{Energy evaluation@{Energy evaluation}!energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pt\discretionary {-}{}{}\_\discretionary {-}{}{}par@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pt\discretionary {-}{}{}\_\discretionary {-}{}{}par}|hyperpage}{76}
\indexentry{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pt\discretionary {-}{}{}\_\discretionary {-}{}{}par@{energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pt\discretionary {-}{}{}\_\discretionary {-}{}{}par}!Energy evaluation@{Energy evaluation}|hyperpage}{76}
\indexentry{Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}|hyperpage}{77}
\indexentry{Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}!inverse\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{inverse\discretionary {-}{}{}\_\discretionary {-}{}{}fold}|hyperpage}{77}
\indexentry{inverse\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{inverse\discretionary {-}{}{}\_\discretionary {-}{}{}fold}!Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}|hyperpage}{77}
\indexentry{Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}!inverse\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{inverse\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold}|hyperpage}{78}
\indexentry{inverse\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold@{inverse\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold}!Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}|hyperpage}{78}
\indexentry{Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}!final\discretionary {-}{}{}\_\discretionary {-}{}{}cost@{final\discretionary {-}{}{}\_\discretionary {-}{}{}cost}|hyperpage}{78}
\indexentry{final\discretionary {-}{}{}\_\discretionary {-}{}{}cost@{final\discretionary {-}{}{}\_\discretionary {-}{}{}cost}!Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}|hyperpage}{78}
\indexentry{Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}!give\discretionary {-}{}{}\_\discretionary {-}{}{}up@{give\discretionary {-}{}{}\_\discretionary {-}{}{}up}|hyperpage}{78}
\indexentry{give\discretionary {-}{}{}\_\discretionary {-}{}{}up@{give\discretionary {-}{}{}\_\discretionary {-}{}{}up}!Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}|hyperpage}{78}
\indexentry{Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}!inv\discretionary {-}{}{}\_\discretionary {-}{}{}verbose@{inv\discretionary {-}{}{}\_\discretionary {-}{}{}verbose}|hyperpage}{78}
\indexentry{inv\discretionary {-}{}{}\_\discretionary {-}{}{}verbose@{inv\discretionary {-}{}{}\_\discretionary {-}{}{}verbose}!Searching Sequences for Predefined Structures@{Searching Sequences for Predefined Structures}|hyperpage}{78}
\indexentry{Classified Dynamic Programming@{Classified Dynamic Programming}|hyperpage}{79}
\indexentry{Distance based partitioning of the Secondary Structure Space@{Distance based partitioning of the Secondary Structure Space}|hyperpage}{80}
\indexentry{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning@{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning}|hyperpage}{81}
\indexentry{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning@{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning}!get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables@{get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables}|hyperpage}{81}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables@{get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables}!Calculating MFE representatives of a Distance Based Partitioning@{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning}|hyperpage}{81}
\indexentry{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning@{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning}!destroy\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables@{destroy\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables}|hyperpage}{82}
\indexentry{destroy\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables@{destroy\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables}!Calculating MFE representatives of a Distance Based Partitioning@{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning}|hyperpage}{82}
\indexentry{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning@{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning}!Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}List@{Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}List}|hyperpage}{82}
\indexentry{Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}List@{Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}List}!Calculating MFE representatives of a Distance Based Partitioning@{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning}|hyperpage}{82}
\indexentry{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning@{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning}!Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}backtrack\discretionary {-}{}{}\_\discretionary {-}{}{}f5@{Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}backtrack\discretionary {-}{}{}\_\discretionary {-}{}{}f5}|hyperpage}{83}
\indexentry{Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}backtrack\discretionary {-}{}{}\_\discretionary {-}{}{}f5@{Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}backtrack\discretionary {-}{}{}\_\discretionary {-}{}{}f5}!Calculating MFE representatives of a Distance Based Partitioning@{Calculating M\discretionary {-}{}{}F\discretionary {-}{}{}E representatives of a Distance Based Partitioning}|hyperpage}{83}
\indexentry{Calculate Partition Functions of a Distance Based Partitioning@{Calculate Partition Functions of a Distance Based Partitioning}|hyperpage}{84}
\indexentry{Calculate Partition Functions of a Distance Based Partitioning@{Calculate Partition Functions of a Distance Based Partitioning}!get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables@{get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables}|hyperpage}{84}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables@{get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables}!Calculate Partition Functions of a Distance Based Partitioning@{Calculate Partition Functions of a Distance Based Partitioning}|hyperpage}{84}
\indexentry{Calculate Partition Functions of a Distance Based Partitioning@{Calculate Partition Functions of a Distance Based Partitioning}!get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables\discretionary {-}{}{}\_\discretionary {-}{}{}from\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E@{get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables\discretionary {-}{}{}\_\discretionary {-}{}{}from\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E}|hyperpage}{85}
\indexentry{get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables\discretionary {-}{}{}\_\discretionary {-}{}{}from\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E@{get\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables\discretionary {-}{}{}\_\discretionary {-}{}{}from\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}M\discretionary {-}{}{}F\discretionary {-}{}{}E}!Calculate Partition Functions of a Distance Based Partitioning@{Calculate Partition Functions of a Distance Based Partitioning}|hyperpage}{85}
\indexentry{Calculate Partition Functions of a Distance Based Partitioning@{Calculate Partition Functions of a Distance Based Partitioning}!destroy\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables@{destroy\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables}|hyperpage}{85}
\indexentry{destroy\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables@{destroy\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}variables}!Calculate Partition Functions of a Distance Based Partitioning@{Calculate Partition Functions of a Distance Based Partitioning}|hyperpage}{85}
\indexentry{Calculate Partition Functions of a Distance Based Partitioning@{Calculate Partition Functions of a Distance Based Partitioning}!Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}List@{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}List}|hyperpage}{85}
\indexentry{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}List@{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}List}!Calculate Partition Functions of a Distance Based Partitioning@{Calculate Partition Functions of a Distance Based Partitioning}|hyperpage}{85}
\indexentry{Stochastic Backtracking of Structures from Distance Based Partitioning@{Stochastic Backtracking of Structures from Distance Based Partitioning}|hyperpage}{87}
\indexentry{Stochastic Backtracking of Structures from Distance Based Partitioning@{Stochastic Backtracking of Structures from Distance Based Partitioning}!Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}pbacktrack@{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}pbacktrack}|hyperpage}{87}
\indexentry{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}pbacktrack@{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}pbacktrack}!Stochastic Backtracking of Structures from Distance Based Partitioning@{Stochastic Backtracking of Structures from Distance Based Partitioning}|hyperpage}{87}
\indexentry{Stochastic Backtracking of Structures from Distance Based Partitioning@{Stochastic Backtracking of Structures from Distance Based Partitioning}!Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}pbacktrack5@{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}pbacktrack5}|hyperpage}{88}
\indexentry{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}pbacktrack5@{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}pbacktrack5}!Stochastic Backtracking of Structures from Distance Based Partitioning@{Stochastic Backtracking of Structures from Distance Based Partitioning}|hyperpage}{88}
\indexentry{Compute the Density of States@{Compute the Density of States}|hyperpage}{89}
\indexentry{Compute the Density of States@{Compute the Density of States}!density\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}states@{density\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}states}|hyperpage}{89}
\indexentry{density\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}states@{density\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}states}!Compute the Density of States@{Compute the Density of States}|hyperpage}{89}
\indexentry{Parsing and Comparing -\/ Functions to Manipulate Structures@{Parsing and Comparing -\/ Functions to Manipulate Structures}|hyperpage}{90}
\indexentry{bond\discretionary {-}{}{}T@{bond\discretionary {-}{}{}T}|hyperpage}{91}
\indexentry{bond\discretionary {-}{}{}T\discretionary {-}{}{}En@{bond\discretionary {-}{}{}T\discretionary {-}{}{}En}|hyperpage}{91}
\indexentry{cofold\discretionary {-}{}{}F@{cofold\discretionary {-}{}{}F}|hyperpage}{91}
\indexentry{Conc\discretionary {-}{}{}Ent@{Conc\discretionary {-}{}{}Ent}|hyperpage}{92}
\indexentry{constrain@{constrain}|hyperpage}{92}
\indexentry{C\discretionary {-}{}{}O\discretionary {-}{}{}O\discretionary {-}{}{}R\discretionary {-}{}{}D\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}T\discretionary {-}{}{}E@{C\discretionary {-}{}{}O\discretionary {-}{}{}O\discretionary {-}{}{}R\discretionary {-}{}{}D\discretionary {-}{}{}I\discretionary {-}{}{}N\discretionary {-}{}{}A\discretionary {-}{}{}T\discretionary {-}{}{}E}|hyperpage}{92}
\indexentry{cpair@{cpair}|hyperpage}{93}
\indexentry{duplex\discretionary {-}{}{}T@{duplex\discretionary {-}{}{}T}|hyperpage}{93}
\indexentry{dup\discretionary {-}{}{}Var@{dup\discretionary {-}{}{}Var}|hyperpage}{93}
\indexentry{folden@{folden}|hyperpage}{93}
\indexentry{interact@{interact}|hyperpage}{93}
\indexentry{intermediate\discretionary {-}{}{}\_\discretionary {-}{}{}t@{intermediate\discretionary {-}{}{}\_\discretionary {-}{}{}t}|hyperpage}{94}
\indexentry{I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}V\discretionary {-}{}{}A\discretionary {-}{}{}L@{I\discretionary {-}{}{}N\discretionary {-}{}{}T\discretionary {-}{}{}E\discretionary {-}{}{}R\discretionary {-}{}{}V\discretionary {-}{}{}A\discretionary {-}{}{}L}|hyperpage}{94}
\indexentry{L\discretionary {-}{}{}I\discretionary {-}{}{}S\discretionary {-}{}{}T@{L\discretionary {-}{}{}I\discretionary {-}{}{}S\discretionary {-}{}{}T}|hyperpage}{95}
\indexentry{L\discretionary {-}{}{}S\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}B\discretionary {-}{}{}U\discretionary {-}{}{}C\discretionary {-}{}{}K\discretionary {-}{}{}E\discretionary {-}{}{}T@{L\discretionary {-}{}{}S\discretionary {-}{}{}T\discretionary {-}{}{}\_\discretionary {-}{}{}\discretionary {-}{}{}B\discretionary {-}{}{}U\discretionary {-}{}{}C\discretionary {-}{}{}K\discretionary {-}{}{}E\discretionary {-}{}{}T}|hyperpage}{95}
\indexentry{model\discretionary {-}{}{}\_\discretionary {-}{}{}details\discretionary {-}{}{}T@{model\discretionary {-}{}{}\_\discretionary {-}{}{}details\discretionary {-}{}{}T}|hyperpage}{96}
\indexentry{model\discretionary {-}{}{}\_\discretionary {-}{}{}details\discretionary {-}{}{}T@{model\discretionary {-}{}{}\_\discretionary {-}{}{}details\discretionary {-}{}{}T}!dangles@{dangles}|hyperpage}{96}
\indexentry{dangles@{dangles}!model_detailsT@{model\discretionary {-}{}{}\_\discretionary {-}{}{}details\discretionary {-}{}{}T}|hyperpage}{96}
\indexentry{move\discretionary {-}{}{}\_\discretionary {-}{}{}t@{move\discretionary {-}{}{}\_\discretionary {-}{}{}t}|hyperpage}{96}
\indexentry{P\discretionary {-}{}{}A\discretionary {-}{}{}I\discretionary {-}{}{}R@{P\discretionary {-}{}{}A\discretionary {-}{}{}I\discretionary {-}{}{}R}|hyperpage}{97}
\indexentry{pair\discretionary {-}{}{}\_\discretionary {-}{}{}info@{pair\discretionary {-}{}{}\_\discretionary {-}{}{}info}|hyperpage}{97}
\indexentry{pairpro@{pairpro}|hyperpage}{98}
\indexentry{param\discretionary {-}{}{}T@{param\discretionary {-}{}{}T}|hyperpage}{98}
\indexentry{path\discretionary {-}{}{}\_\discretionary {-}{}{}t@{path\discretionary {-}{}{}\_\discretionary {-}{}{}t}|hyperpage}{99}
\indexentry{pf\discretionary {-}{}{}\_\discretionary {-}{}{}param\discretionary {-}{}{}T@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}param\discretionary {-}{}{}T}|hyperpage}{99}
\indexentry{pf\discretionary {-}{}{}\_\discretionary {-}{}{}param\discretionary {-}{}{}T@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}param\discretionary {-}{}{}T}!alpha@{alpha}|hyperpage}{100}
\indexentry{alpha@{alpha}!pf_paramT@{pf\discretionary {-}{}{}\_\discretionary {-}{}{}param\discretionary {-}{}{}T}|hyperpage}{100}
\indexentry{plist@{plist}|hyperpage}{100}
\indexentry{Postorder\discretionary {-}{}{}\_\discretionary {-}{}{}list@{Postorder\discretionary {-}{}{}\_\discretionary {-}{}{}list}|hyperpage}{100}
\indexentry{pu\discretionary {-}{}{}\_\discretionary {-}{}{}contrib@{pu\discretionary {-}{}{}\_\discretionary {-}{}{}contrib}|hyperpage}{100}
\indexentry{pu\discretionary {-}{}{}\_\discretionary {-}{}{}out@{pu\discretionary {-}{}{}\_\discretionary {-}{}{}out}|hyperpage}{101}
\indexentry{sect@{sect}|hyperpage}{101}
\indexentry{snoop\discretionary {-}{}{}T@{snoop\discretionary {-}{}{}T}|hyperpage}{102}
\indexentry{S\discretionary {-}{}{}O\discretionary {-}{}{}L\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}I\discretionary {-}{}{}O\discretionary {-}{}{}N@{S\discretionary {-}{}{}O\discretionary {-}{}{}L\discretionary {-}{}{}U\discretionary {-}{}{}T\discretionary {-}{}{}I\discretionary {-}{}{}O\discretionary {-}{}{}N}|hyperpage}{102}
\indexentry{struct\discretionary {-}{}{}\_\discretionary {-}{}{}en@{struct\discretionary {-}{}{}\_\discretionary {-}{}{}en}|hyperpage}{102}
\indexentry{svm\discretionary {-}{}{}\_\discretionary {-}{}{}model@{svm\discretionary {-}{}{}\_\discretionary {-}{}{}model}|hyperpage}{102}
\indexentry{sw\discretionary {-}{}{}String@{sw\discretionary {-}{}{}String}|hyperpage}{102}
\indexentry{Tree@{Tree}|hyperpage}{103}
\indexentry{Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}solution@{Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}solution}|hyperpage}{103}
\indexentry{Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}vars@{Two\discretionary {-}{}{}Dfold\discretionary {-}{}{}\_\discretionary {-}{}{}vars}|hyperpage}{104}
\indexentry{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}solution@{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}solution}|hyperpage}{105}
\indexentry{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}vars@{Two\discretionary {-}{}{}Dpfold\discretionary {-}{}{}\_\discretionary {-}{}{}vars}|hyperpage}{106}
\indexentry{/home/asherstnev/\discretionary {-}{}{}Projects/\discretionary {-}{}{}Java.\discretionary {-}{}{}projects/jabaws/secure-\/git/develop/binaries/src/\discretionary {-}{}{}Vienna\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A/\discretionary {-}{}{}H/2\discretionary {-}{}{}Dfold.\discretionary {-}{}{}h@{/home/asherstnev/\discretionary {-}{}{}Projects/\discretionary {-}{}{}Java.\discretionary {-}{}{}projects/jabaws/secure-\/git/develop/binaries/src/\discretionary {-}{}{}Vienna\discretionary {-}{}{}R\discretionary {-}{}{}N\discretionary {-}{}{}A/\discretionary {-}{}{}H/2\discretionary {-}{}{}Dfold.\discretionary {-}{}{}h}|hyperpage}{109}
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