binaries/src/ViennaRNA/doc/latex/structinteract.tex

   1 \hypertarget{structinteract}{\section{interact Struct Reference}
   2 \label{structinteract}\index{interact@{interact}}
   3 }
   4 \subsection*{Data Fields}
   5 \begin{DoxyCompactItemize}
   6 \item
   7 \hypertarget{structinteract_a1fc8b3860c083f164daa9712690a3a56}{double $\ast$ \hyperlink{structinteract_a1fc8b3860c083f164daa9712690a3a56}{Pi}}\label{structinteract_a1fc8b3860c083f164daa9712690a3a56}
   8
   9 \begin{DoxyCompactList}\small\item\em probabilities of interaction \end{DoxyCompactList}\item
  10 \hypertarget{structinteract_a54f8183542fff4c32ab7ace49a16c02c}{double $\ast$ \hyperlink{structinteract_a54f8183542fff4c32ab7ace49a16c02c}{Gi}}\label{structinteract_a54f8183542fff4c32ab7ace49a16c02c}
  11
  12 \begin{DoxyCompactList}\small\item\em free energies of interaction \end{DoxyCompactList}\item
  13 \hypertarget{structinteract_ad58303190f9e085c3ab59890cbf61223}{double \hyperlink{structinteract_ad58303190f9e085c3ab59890cbf61223}{Gikjl}}\label{structinteract_ad58303190f9e085c3ab59890cbf61223}
  14
  15 \begin{DoxyCompactList}\small\item\em full free energy for interaction between \mbox{[}k,i\mbox{]} k$<$i in longer seq and \mbox{[}j,l\mbox{]} j$<$l in shorter seq \end{DoxyCompactList}\item
  16 \hypertarget{structinteract_a41793812abae560805414761fec398fe}{double \hyperlink{structinteract_a41793812abae560805414761fec398fe}{Gikjl\-\_\-wo}}\label{structinteract_a41793812abae560805414761fec398fe}
  17
  18 \begin{DoxyCompactList}\small\item\em Gikjl without contributions for prob\-\_\-unpaired. \end{DoxyCompactList}\item
  19 \hypertarget{structinteract_ab6d031a21388be8763b75ea74c937f17}{int \hyperlink{structinteract_ab6d031a21388be8763b75ea74c937f17}{i}}\label{structinteract_ab6d031a21388be8763b75ea74c937f17}
  20
  21 \begin{DoxyCompactList}\small\item\em k$<$i in longer seq \end{DoxyCompactList}\item
  22 \hypertarget{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}{int \hyperlink{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}{k}}\label{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}
  23
  24 \begin{DoxyCompactList}\small\item\em k$<$i in longer seq \end{DoxyCompactList}\item
  25 \hypertarget{structinteract_a7555cb6363d1479341eb72b9c087aa34}{int \hyperlink{structinteract_a7555cb6363d1479341eb72b9c087aa34}{j}}\label{structinteract_a7555cb6363d1479341eb72b9c087aa34}
  26
  27 \begin{DoxyCompactList}\small\item\em j$<$l in shorter seq \end{DoxyCompactList}\item
  28 \hypertarget{structinteract_a030ab45056342e12cb3955e4defd3904}{int \hyperlink{structinteract_a030ab45056342e12cb3955e4defd3904}{l}}\label{structinteract_a030ab45056342e12cb3955e4defd3904}
  29
  30 \begin{DoxyCompactList}\small\item\em j$<$l in shorter seq \end{DoxyCompactList}\item
  31 \hypertarget{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}{int \hyperlink{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}{length}}\label{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}
  32
  33 \begin{DoxyCompactList}\small\item\em length of longer sequence \end{DoxyCompactList}\end{DoxyCompactItemize}
  34
  35
  36 The documentation for this struct was generated from the following file\-:\begin{DoxyCompactItemize}
  37 \item
  38 /home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\hyperlink{data__structures_8h}{data\-\_\-structures.\-h}\end{DoxyCompactItemize}