binaries/src/ViennaRNA/doc/latex/structpf__paramT.tex

   1 \hypertarget{structpf__paramT}{\section{pf\-\_\-param\-T Struct Reference}
   2 \label{structpf__paramT}\index{pf\-\_\-param\-T@{pf\-\_\-param\-T}}
   3 }
   4
   5
   6 The datastructure that contains temperature scaled Boltzmann weights of the energy parameters.
   7
   8
   9
  10
  11 Collaboration diagram for pf\-\_\-param\-T\-:
  12 \nopagebreak
  13 \begin{figure}[H]
  14 \begin{center}
  15 \leavevmode
  16 \includegraphics[width=183pt]{structpf__paramT__coll__graph}
  17 \end{center}
  18 \end{figure}
  19 \subsection*{Data Fields}
  20 \begin{DoxyCompactItemize}
  21 \item
  22 \hypertarget{structpf__paramT_aef40322e7ca1adbd9b438aeda0352e8f}{double \hyperlink{structpf__paramT_aef40322e7ca1adbd9b438aeda0352e8f}{pf\-\_\-scale}}\label{structpf__paramT_aef40322e7ca1adbd9b438aeda0352e8f}
  23
  24 \begin{DoxyCompactList}\small\item\em Scaling factor to avoid over-\//underflows. \end{DoxyCompactList}\item
  25 \hypertarget{structpf__paramT_aa0e11e9f1f6e212640baf40d7195a014}{double \hyperlink{structpf__paramT_aa0e11e9f1f6e212640baf40d7195a014}{temperature}}\label{structpf__paramT_aa0e11e9f1f6e212640baf40d7195a014}
  26
  27 \begin{DoxyCompactList}\small\item\em Temperature used for loop contribution scaling. \end{DoxyCompactList}\item
  28 double \hyperlink{structpf__paramT_a3d2af9040acfa08295efb50f0219149d}{alpha}
  29 \begin{DoxyCompactList}\small\item\em Scaling factor for the thermodynamic temperature. \end{DoxyCompactList}\item
  30 \hypertarget{structpf__paramT_a43ec875779c5e7c8bf5fa7e837ec6d09}{\hyperlink{structmodel__detailsT}{model\-\_\-details\-T} \hyperlink{structpf__paramT_a43ec875779c5e7c8bf5fa7e837ec6d09}{model\-\_\-details}}\label{structpf__paramT_a43ec875779c5e7c8bf5fa7e837ec6d09}
  31
  32 \begin{DoxyCompactList}\small\item\em Model details to be used in the recursions. \end{DoxyCompactList}\end{DoxyCompactItemize}
  33
  34
  35 \subsection{Detailed Description}
  36 The datastructure that contains temperature scaled Boltzmann weights of the energy parameters.
  37
  38 \subsection{Field Documentation}
  39 \hypertarget{structpf__paramT_a3d2af9040acfa08295efb50f0219149d}{\index{pf\-\_\-param\-T@{pf\-\_\-param\-T}!alpha@{alpha}}
  40 \index{alpha@{alpha}!pf_paramT@{pf\-\_\-param\-T}}
  41 \subsubsection[{alpha}]{\setlength{\rightskip}{0pt plus 5cm}double pf\-\_\-param\-T\-::alpha}}\label{structpf__paramT_a3d2af9040acfa08295efb50f0219149d}
  42
  43
  44 Scaling factor for the thermodynamic temperature.
  45
  46 This allows for temperature scaling in Boltzmann factors independently from the energy contributions. The resulting Boltzmann factors are then computed by $ e^{-E/(\alpha \cdot K \cdot T)} $
  47
  48 The documentation for this struct was generated from the following file\-:\begin{DoxyCompactItemize}
  49 \item
  50 /home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\hyperlink{data__structures_8h}{data\-\_\-structures.\-h}\end{DoxyCompactItemize}