binaries/src/ViennaRNA/doc/latex/subopt_8h.tex

   1 \hypertarget{subopt_8h}{\section{/home/asherstnev/\-Projects/\-Java.projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/subopt.h File Reference}
   2 \label{subopt_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/subopt.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/subopt.\-h}}
   3 }
   4
   5
   6 R\-N\-Asubopt and density of states declarations.
   7
   8
   9 Include dependency graph for subopt.\-h\-:
  10 \nopagebreak
  11 \begin{figure}[H]
  12 \begin{center}
  13 \leavevmode
  14 \includegraphics[width=250pt]{subopt_8h__incl}
  15 \end{center}
  16 \end{figure}
  17 \subsection*{Functions}
  18 \begin{DoxyCompactItemize}
  19 \item
  20 \hyperlink{structSOLUTION}{S\-O\-L\-U\-T\-I\-O\-N} $\ast$ \hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt} (char $\ast$seq, char $\ast$structure, int delta, F\-I\-L\-E $\ast$fp)
  21 \begin{DoxyCompactList}\small\item\em Returns list of subopt structures or writes to fp. \end{DoxyCompactList}\item
  22 \hypertarget{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{\hyperlink{structSOLUTION}{S\-O\-L\-U\-T\-I\-O\-N} $\ast$ \hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\-\_\-par} (char $\ast$seq, char $\ast$structure, \hyperlink{structparamT}{param\-T} $\ast$parameters, int delta, int is\-\_\-constrained, int is\-\_\-circular, F\-I\-L\-E $\ast$fp)}\label{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}
  23
  24 \begin{DoxyCompactList}\small\item\em Returns list of subopt structures or writes to fp. \end{DoxyCompactList}\item
  25 \hyperlink{structSOLUTION}{S\-O\-L\-U\-T\-I\-O\-N} $\ast$ \hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\-\_\-circ} (char $\ast$seq, char $\ast$sequence, int delta, F\-I\-L\-E $\ast$fp)
  26 \begin{DoxyCompactList}\small\item\em Returns list of circular subopt structures or writes to fp. \end{DoxyCompactList}\end{DoxyCompactItemize}
  27 \subsection*{Variables}
  28 \begin{DoxyCompactItemize}
  29 \item
  30 \hypertarget{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}{int \hyperlink{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}{subopt\-\_\-sorted}}\label{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}
  31
  32 \begin{DoxyCompactList}\small\item\em Sort output by energy. \end{DoxyCompactList}\item
  33 \hypertarget{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}{double \hyperlink{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}{print\-\_\-energy}}\label{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}
  34
  35 \begin{DoxyCompactList}\small\item\em printing threshold for use with log\-M\-L \end{DoxyCompactList}\item
  36 int \hyperlink{group__dos_ga937634a76b46a22530a74906f1957a9e}{density\-\_\-of\-\_\-states} \mbox{[}\hyperlink{data__structures_8h_a5ec740b80afb4906ba4311dbd8ddbd89}{M\-A\-X\-D\-O\-S}+1\mbox{]}
  37 \begin{DoxyCompactList}\small\item\em The Density of States. \end{DoxyCompactList}\end{DoxyCompactItemize}
  38
  39
  40 \subsection{Detailed Description}
  41 R\-N\-Asubopt and density of states declarations.