binaries/src/ViennaRNA/doc/latex/subopt_8h_source.tex

   1 \hypertarget{subopt_8h}{\section{subopt.\-h}
   2 \label{subopt_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/subopt.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/subopt.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{comment}{/* subopt.h */}
   7 00002 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_SUBOPT\_H\_\_}
   8 00003 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_SUBOPT\_H\_\_}
   9 00004 \textcolor{preprocessor}{}
  10 00005 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
  11 00006
  12 00007 \textcolor{preprocessor}{#define MAXDOS 1000}
  13 00008 \textcolor{preprocessor}{}
  14 00043 \hyperlink{structSOLUTION}{SOLUTION} *\hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt} (\textcolor{keywordtype}{char} *seq,
  15 00044                   \textcolor{keywordtype}{char} *structure,
  16 00045                   \textcolor{keywordtype}{int} delta,
  17 00046                   FILE *fp);
  18 00047
  19 00053 \hyperlink{structSOLUTION}{SOLUTION} *\hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\_par}( \textcolor{keywordtype}{char} *seq,
  20 00054                       \textcolor{keywordtype}{char} *structure,
  21 00055                       \hyperlink{structparamT}{paramT} *parameters,
  22 00056                       \textcolor{keywordtype}{int} delta,
  23 00057                       \textcolor{keywordtype}{int} is\_constrained,
  24 00058                       \textcolor{keywordtype}{int} is\_circular,
  25 00059                       FILE *fp);
  26 00060
  27 00075 \hyperlink{structSOLUTION}{SOLUTION} *\hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\_circ} ( \textcolor{keywordtype}{char} *seq,
  28 00076                         \textcolor{keywordtype}{char} *sequence,
  29 00077                         \textcolor{keywordtype}{int} delta,
  30 00078                         FILE *fp);
  31 00079
  32 00086 \textcolor{keyword}{extern}  \textcolor{keywordtype}{int}     \hyperlink{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}{subopt\_sorted};
  33 00087
  34 00088
  35 00095 \textcolor{keyword}{extern}  \textcolor{keywordtype}{double}  \hyperlink{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}{print\_energy};
  36 00096
  37 00113 \textcolor{keyword}{extern}  \textcolor{keywordtype}{int}     \hyperlink{group__dos_ga937634a76b46a22530a74906f1957a9e}{density\_of\_states}[\hyperlink{data__structures_8h_a5ec740b80afb4906ba4311dbd8ddbd89}{MAXDOS}+1];
  38 00114  \textcolor{comment}{/* End of group dos */}
  39 00116
  40 00117 \textcolor{preprocessor}{#endif}
  41 \end{DoxyCode}