2 # Generated by configure.
3 # Run this file to recreate the current configuration.
4 # Compiler output produced by configure, useful for debugging
5 # configure, is in config.log if it exists.
10 SHELL=${CONFIG_SHELL-/bin/sh}
11 ## --------------------- ##
12 ## M4sh Initialization. ##
13 ## --------------------- ##
15 # Be more Bourne compatible
16 DUALCASE=1; export DUALCASE # for MKS sh
17 if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
20 # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
21 # is contrary to our usage. Disable this feature.
22 alias -g '${1+"$@"}'='"$@"'
25 case `(set -o) 2>/dev/null` in
26 *posix*) set -o posix ;;
35 # Avoid depending upon Character Ranges.
36 as_cr_letters='abcdefghijklmnopqrstuvwxyz'
37 as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
38 as_cr_Letters=$as_cr_letters$as_cr_LETTERS
39 as_cr_digits='0123456789'
40 as_cr_alnum=$as_cr_Letters$as_cr_digits
45 # Printing a long string crashes Solaris 7 /usr/bin/printf.
46 as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
47 as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
48 as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
49 if (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
53 if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
54 as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
55 as_echo_n='/usr/ucb/echo -n'
57 as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
62 expr "X$arg" : "X\\(.*\\)$as_nl";
63 arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
65 expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
68 as_echo_n='sh -c $as_echo_n_body as_echo'
71 as_echo='sh -c $as_echo_body as_echo'
74 # The user is always right.
75 if test "${PATH_SEPARATOR+set}" != set; then
77 (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
78 (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
83 # Support unset when possible.
84 if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
92 # We need space, tab and new line, in precisely that order. Quoting is
93 # there to prevent editors from complaining about space-tab.
94 # (If _AS_PATH_WALK were called with IFS unset, it would disable word
95 # splitting by setting IFS to empty value.)
98 # Find who we are. Look in the path if we contain no directory separator.
100 *[\\/]* ) as_myself=$0 ;;
101 *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
105 test -z "$as_dir" && as_dir=.
106 test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
112 # We did not find ourselves, most probably we were run as `sh COMMAND'
113 # in which case we are not to be found in the path.
114 if test "x$as_myself" = x; then
117 if test ! -f "$as_myself"; then
118 $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
119 { (exit 1); exit 1; }
122 # Work around bugs in pre-3.0 UWIN ksh.
123 for as_var in ENV MAIL MAILPATH
124 do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
136 # Required to use basename.
137 if expr a : '\(a\)' >/dev/null 2>&1 &&
138 test "X`expr 00001 : '.*\(...\)'`" = X001; then
144 if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
151 # Name of the executable.
152 as_me=`$as_basename -- "$0" ||
153 $as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
154 X"$0" : 'X\(//\)$' \| \
155 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
157 sed '/^.*\/\([^/][^/]*\)\/*$/{
178 test "x$as_lineno_1" != "x$as_lineno_2" &&
179 test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
181 # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
182 # uniformly replaced by the line number. The first 'sed' inserts a
183 # line-number line after each line using $LINENO; the second 'sed'
184 # does the real work. The second script uses 'N' to pair each
185 # line-number line with the line containing $LINENO, and appends
186 # trailing '-' during substitution so that $LINENO is not a special
188 # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
189 # scripts with optimization help from Paolo Bonzini. Blame Lee
190 # E. McMahon (1931-1989) for sed's syntax. :-)
202 s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
206 chmod +x "$as_me.lineno" ||
207 { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
208 { (exit 1); exit 1; }; }
210 # Don't try to exec as it changes $[0], causing all sort of problems
211 # (the dirname of $[0] is not the place where we might find the
212 # original and so on. Autoconf is especially sensitive to this).
214 # Exit status is that of the last command.
219 if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
225 ECHO_C= ECHO_N= ECHO_T=
229 *c*) ECHO_T=' ';; # ECHO_T is single tab character.
235 if expr a : '\(a\)' >/dev/null 2>&1 &&
236 test "X`expr 00001 : '.*\(...\)'`" = X001; then
242 rm -f conf$$ conf$$.exe conf$$.file
243 if test -d conf$$.dir; then
244 rm -f conf$$.dir/conf$$.file
247 mkdir conf$$.dir 2>/dev/null
249 if (echo >conf$$.file) 2>/dev/null; then
250 if ln -s conf$$.file conf$$ 2>/dev/null; then
252 # ... but there are two gotchas:
253 # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
254 # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
255 # In both cases, we have to default to `cp -p'.
256 ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
258 elif ln conf$$.file conf$$ 2>/dev/null; then
266 rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
267 rmdir conf$$.dir 2>/dev/null
269 if mkdir -p . 2>/dev/null; then
272 test -d ./-p && rmdir ./-p
276 if test -x / >/dev/null 2>&1; then
279 if ls -dL / >/dev/null 2>&1; then
286 if test -d "$1"; then
292 case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
293 ???[sx]*):;;*)false;;esac;fi
297 as_executable_p=$as_test_x
299 # Sed expression to map a string onto a valid CPP name.
300 as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
302 # Sed expression to map a string onto a valid variable name.
303 as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
308 # Save the log message, to keep $[0] and so on meaningful, and to
309 # report actual input values of CONFIG_FILES etc. instead of their
310 # values after options handling.
312 This file was extended by Clustal Omega $as_me 1.2.4, which was
313 generated by GNU Autoconf 2.63. Invocation command line was
315 CONFIG_FILES = $CONFIG_FILES
316 CONFIG_HEADERS = $CONFIG_HEADERS
317 CONFIG_LINKS = $CONFIG_LINKS
318 CONFIG_COMMANDS = $CONFIG_COMMANDS
321 on `(hostname || uname -n) 2>/dev/null | sed 1q`
324 # Files that config.status was made for.
325 config_files=" Makefile src/Makefile clustalo.pc Doxyfile src/clustal/Makefile src/hhalign/Makefile src/kmpp/Makefile src/squid/Makefile"
326 config_headers=" src/config.h"
327 config_commands=" src/clustal-omega-config.h depfiles libtool"
330 \`$as_me' instantiates files from templates according to the
331 current configuration.
333 Usage: $0 [OPTION]... [FILE]...
335 -h, --help print this help, then exit
336 -V, --version print version number and configuration settings, then exit
337 -q, --quiet, --silent
338 do not print progress messages
339 -d, --debug don't remove temporary files
340 --recheck update $as_me by reconfiguring in the same conditions
341 --file=FILE[:TEMPLATE]
342 instantiate the configuration file FILE
343 --header=FILE[:TEMPLATE]
344 instantiate the configuration header FILE
349 Configuration headers:
352 Configuration commands:
355 Report bugs to <bug-autoconf@gnu.org>."
358 Clustal Omega config.status 1.2.4
359 configured by ./configure, generated by GNU Autoconf 2.63,
362 Copyright (C) 2008 Free Software Foundation, Inc.
363 This config.status script is free software; the Free Software Foundation
364 gives unlimited permission to copy, distribute and modify it."
366 ac_pwd='/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo'
368 INSTALL='/usr/bin/install -c'
369 MKDIR_P='/bin/mkdir -p'
371 test -n "$AWK" || AWK=awk
372 # The default lists apply if the user does not specify any file.
378 ac_option=`expr "X$1" : 'X\([^=]*\)='`
379 ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
390 # Handling of the options.
391 -recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
393 --version | --versio | --versi | --vers | --ver | --ve | --v | -V )
394 $as_echo "$ac_cs_version"; exit ;;
395 --debug | --debu | --deb | --de | --d | -d )
397 --file | --fil | --fi | --f )
400 *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
402 CONFIG_FILES="$CONFIG_FILES '$ac_optarg'"
403 ac_need_defaults=false;;
404 --header | --heade | --head | --hea )
407 *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
409 CONFIG_HEADERS="$CONFIG_HEADERS '$ac_optarg'"
410 ac_need_defaults=false;;
412 # Conflict between --help and --header
413 { $as_echo "$as_me: error: ambiguous option: $1
414 Try \`$0 --help' for more information." >&2
415 { (exit 1); exit 1; }; };;
416 --help | --hel | -h )
417 $as_echo "$ac_cs_usage"; exit ;;
418 -q | -quiet | --quiet | --quie | --qui | --qu | --q \
419 | -silent | --silent | --silen | --sile | --sil | --si | --s)
423 -*) { $as_echo "$as_me: error: unrecognized option: $1
424 Try \`$0 --help' for more information." >&2
425 { (exit 1); exit 1; }; } ;;
427 *) ac_config_targets="$ac_config_targets $1"
428 ac_need_defaults=false ;;
434 ac_configure_extra_args=
436 if $ac_cs_silent; then
438 ac_configure_extra_args="$ac_configure_extra_args --silent"
441 if $ac_cs_recheck; then
442 set X '/bin/sh' './configure' $ac_configure_extra_args --no-create --no-recursion
444 $as_echo "running CONFIG_SHELL=/bin/sh $*" >&6
445 CONFIG_SHELL='/bin/sh'
453 sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
454 ## Running $as_me. ##
462 PACKAGE="clustal-omega"
463 AMDEP_TRUE="" ac_aux_dir="."
466 # The HP-UX ksh and POSIX shell print the target directory to stdout
468 (unset CDPATH) >/dev/null 2>&1 && unset CDPATH
470 sed_quote_subst='s/\(["`$\\]\)/\\\1/g'
471 double_quote_subst='s/\(["`\\]\)/\\\1/g'
472 delay_variable_subst='s/\\\\\\\\\\\$/\\\\\\$/g'
473 macro_version='2.2.6'
474 macro_revision='1.3012'
478 enable_fast_install='yes'
480 host='x86_64-unknown-linux-gnu'
483 build='x86_64-unknown-linux-gnu'
486 Xsed='/bin/sed -e 1s/^X//'
490 LD='/usr/bin/ld -m elf_x86_64'
493 max_cmd_len='1966080'
497 lt_SP2NL='tr \040 \012'
498 lt_NL2SP='tr \015\012 \040\040'
500 reload_cmds='$LD$reload_flag -o $output$reload_objs'
502 deplibs_check_method='pass_all'
503 file_magic_cmd='$MAGIC_CMD'
508 old_postinstall_cmds='chmod 644 $oldlib~$RANLIB $oldlib'
509 old_postuninstall_cmds=''
510 old_archive_cmds='$AR $AR_FLAGS $oldlib$oldobjs~$RANLIB $oldlib'
515 lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'''
516 lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
517 lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
518 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
523 lt_prog_compiler_no_builtin_flag=' -fno-builtin'
524 lt_prog_compiler_wl='-Wl,'
525 lt_prog_compiler_pic=' -fPIC -DPIC'
526 lt_prog_compiler_static='-static'
527 lt_cv_prog_compiler_c_o='yes'
536 extract_expsyms_cmds=''
537 archive_cmds_need_lc='no'
538 enable_shared_with_static_runtimes='no'
539 export_dynamic_flag_spec='${wl}--export-dynamic'
540 whole_archive_flag_spec='${wl}--whole-archive$convenience ${wl}--no-whole-archive'
541 compiler_needs_object='no'
542 old_archive_from_new_cmds=''
543 old_archive_from_expsyms_cmds=''
544 archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
545 archive_expsym_cmds='echo "{ global:" > $output_objdir/$libname.ver~
546 cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~
547 echo "local: *; };" >> $output_objdir/$libname.ver~
548 $CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib'
550 module_expsym_cmds=''
552 allow_undefined_flag=''
554 hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir'
555 hardcode_libdir_flag_spec_ld=''
556 hardcode_libdir_separator=''
558 hardcode_direct_absolute='no'
559 hardcode_minus_L='no'
560 hardcode_shlibpath_var='unsupported'
561 hardcode_automatic='no'
563 link_all_deplibs='unknown'
565 always_export_symbols='no'
566 export_symbols_cmds='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols'
567 exclude_expsyms='_GLOBAL_OFFSET_TABLE_|_GLOBAL__F[ID]_.*'
571 variables_saved_for_relink='PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COMPILER_PATH LIBRARY_PATH'
575 runpath_var='LD_RUN_PATH'
576 shlibpath_var='LD_LIBRARY_PATH'
577 shlibpath_overrides_runpath='no'
578 libname_spec='lib$name'
579 library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
580 soname_spec='${libname}${release}${shared_ext}$major'
582 postuninstall_cmds=''
583 finish_cmds='PATH="\$PATH:/sbin" ldconfig -n $libdir'
585 hardcode_into_libs='yes'
586 sys_lib_search_path_spec='/usr/lib/gcc/x86_64-redhat-linux/4.4.7 /usr/lib64 /lib64'
587 sys_lib_dlsearch_path_spec='/lib /usr/lib /usr/lib64/R/lib /usr/lib64/atlas /usr/lib64/mysql /usr/lib64/papi-4.1.3 /usr/lib64/papi-5.1.1/usr/lib /usr/lib64/qt-3.3/lib /opt/dell/srvadmin/lib64 /opt/dell/srvadmin/lib64/openmanage /opt/dell/srvadmin/lib64 /opt/dell/srvadmin/lib64 /opt/dell/srvadmin/lib64/srvadmin-isvc /opt/dell/srvadmin/lib64 /opt/dell/srvadmin/lib64/openmanage /opt/dell/srvadmin/lib64 /opt/dell/srvadmin/lib64/openmanage /usr/lib64/tcl8.5 /usr/lib/wine/ /usr/lib64/wine/ /usr/lib64/xulrunner '
588 hardcode_action='immediate'
589 enable_dlopen='unknown'
590 enable_dlopen_self='unknown'
591 enable_dlopen_self_static='unknown'
592 old_striplib='strip --strip-debug'
593 striplib='strip --strip-unneeded'
594 compiler_lib_search_dirs=''
599 compiler_lib_search_path=''
600 LD_CXX='/usr/bin/ld -m elf_x86_64'
601 old_archive_cmds_CXX='$AR $AR_FLAGS $oldlib$oldobjs~$RANLIB $oldlib'
604 lt_prog_compiler_no_builtin_flag_CXX=' -fno-builtin'
605 lt_prog_compiler_wl_CXX='-Wl,'
606 lt_prog_compiler_pic_CXX=' -fPIC -DPIC'
607 lt_prog_compiler_static_CXX='-static'
608 lt_cv_prog_compiler_c_o_CXX='yes'
609 archive_cmds_need_lc_CXX='no'
610 enable_shared_with_static_runtimes_CXX='no'
611 export_dynamic_flag_spec_CXX='${wl}--export-dynamic'
612 whole_archive_flag_spec_CXX='${wl}--whole-archive$convenience ${wl}--no-whole-archive'
613 compiler_needs_object_CXX='no'
614 old_archive_from_new_cmds_CXX=''
615 old_archive_from_expsyms_cmds_CXX=''
616 archive_cmds_CXX='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib'
617 archive_expsym_cmds_CXX='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
619 module_expsym_cmds_CXX=''
620 with_gnu_ld_CXX='yes'
621 allow_undefined_flag_CXX=''
622 no_undefined_flag_CXX=''
623 hardcode_libdir_flag_spec_CXX='${wl}-rpath ${wl}$libdir'
624 hardcode_libdir_flag_spec_ld_CXX=''
625 hardcode_libdir_separator_CXX=''
626 hardcode_direct_CXX='no'
627 hardcode_direct_absolute_CXX='no'
628 hardcode_minus_L_CXX='no'
629 hardcode_shlibpath_var_CXX='unsupported'
630 hardcode_automatic_CXX='no'
631 inherit_rpath_CXX='no'
632 link_all_deplibs_CXX='no'
633 fix_srcfile_path_CXX=''
634 always_export_symbols_CXX='no'
635 export_symbols_cmds_CXX='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols'
636 exclude_expsyms_CXX='_GLOBAL_OFFSET_TABLE_|_GLOBAL__F[ID]_.*'
637 include_expsyms_CXX=''
639 file_list_spec_CXX=''
640 hardcode_action_CXX='immediate'
641 compiler_lib_search_dirs_CXX='/usr/lib/gcc/x86_64-redhat-linux/4.4.7 /usr/lib/gcc/x86_64-redhat-linux/4.4.7 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 /lib/../lib64 /usr/lib/../lib64 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../..'
642 predep_objects_CXX='/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbeginS.o'
643 postdep_objects_CXX='/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtendS.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o'
645 postdeps_CXX='-lstdc++ -lm -lgcc_s -lc -lgcc_s'
646 compiler_lib_search_path_CXX='-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../..'
652 # Quote evaled strings.
653 for var in SED GREP EGREP FGREP LD NM LN_S lt_SP2NL lt_NL2SP reload_flag OBJDUMP deplibs_check_method file_magic_cmd AR AR_FLAGS STRIP RANLIB CC CFLAGS compiler lt_cv_sys_global_symbol_pipe lt_cv_sys_global_symbol_to_cdecl lt_cv_sys_global_symbol_to_c_name_address lt_cv_sys_global_symbol_to_c_name_address_lib_prefix SHELL ECHO lt_prog_compiler_no_builtin_flag lt_prog_compiler_wl lt_prog_compiler_pic lt_prog_compiler_static lt_cv_prog_compiler_c_o need_locks DSYMUTIL NMEDIT LIPO OTOOL OTOOL64 shrext_cmds export_dynamic_flag_spec whole_archive_flag_spec compiler_needs_object with_gnu_ld allow_undefined_flag no_undefined_flag hardcode_libdir_flag_spec hardcode_libdir_flag_spec_ld hardcode_libdir_separator fix_srcfile_path exclude_expsyms include_expsyms file_list_spec variables_saved_for_relink libname_spec library_names_spec soname_spec finish_eval old_striplib striplib compiler_lib_search_dirs predep_objects postdep_objects predeps postdeps compiler_lib_search_path LD_CXX compiler_CXX lt_prog_compiler_no_builtin_flag_CXX lt_prog_compiler_wl_CXX lt_prog_compiler_pic_CXX lt_prog_compiler_static_CXX lt_cv_prog_compiler_c_o_CXX export_dynamic_flag_spec_CXX whole_archive_flag_spec_CXX compiler_needs_object_CXX with_gnu_ld_CXX allow_undefined_flag_CXX no_undefined_flag_CXX hardcode_libdir_flag_spec_CXX hardcode_libdir_flag_spec_ld_CXX hardcode_libdir_separator_CXX fix_srcfile_path_CXX exclude_expsyms_CXX include_expsyms_CXX file_list_spec_CXX compiler_lib_search_dirs_CXX predep_objects_CXX postdep_objects_CXX predeps_CXX postdeps_CXX compiler_lib_search_path_CXX; do
654 case `eval \\$ECHO "X\\$$var"` in
656 eval "lt_$var=\\\"\`\$ECHO \"X\$$var\" | \$Xsed -e \"\$sed_quote_subst\"\`\\\""
659 eval "lt_$var=\\\"\$$var\\\""
664 # Double-quote double-evaled strings.
665 for var in reload_cmds old_postinstall_cmds old_postuninstall_cmds old_archive_cmds extract_expsyms_cmds old_archive_from_new_cmds old_archive_from_expsyms_cmds archive_cmds archive_expsym_cmds module_cmds module_expsym_cmds export_symbols_cmds prelink_cmds postinstall_cmds postuninstall_cmds finish_cmds sys_lib_search_path_spec sys_lib_dlsearch_path_spec old_archive_cmds_CXX old_archive_from_new_cmds_CXX old_archive_from_expsyms_cmds_CXX archive_cmds_CXX archive_expsym_cmds_CXX module_cmds_CXX module_expsym_cmds_CXX export_symbols_cmds_CXX prelink_cmds_CXX; do
666 case `eval \\$ECHO "X\\$$var"` in
668 eval "lt_$var=\\\"\`\$ECHO \"X\$$var\" | \$Xsed -e \"\$double_quote_subst\" -e \"\$sed_quote_subst\" -e \"\$delay_variable_subst\"\`\\\""
671 eval "lt_$var=\\\"\$$var\\\""
676 # Fix-up fallback echo if it was mangled by the above quoting rules.
678 *'\$0 --fallback-echo"') lt_ECHO=`$ECHO "X$lt_ECHO" | $Xsed -e 's/\\\\\\\$0 --fallback-echo"$/$0 --fallback-echo"/'`
684 lt_shell_append='yes'
686 # See if we are running on zsh, and set the options which allow our
687 # commands through without removal of \ escapes INIT.
688 if test -n "${ZSH_VERSION+set}" ; then
693 PACKAGE='clustal-omega'
705 # Handling of arguments.
706 for ac_config_target in $ac_config_targets
708 case $ac_config_target in
709 "src/config.h") CONFIG_HEADERS="$CONFIG_HEADERS src/config.h" ;;
710 "src/clustal-omega-config.h") CONFIG_COMMANDS="$CONFIG_COMMANDS src/clustal-omega-config.h" ;;
711 "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
712 "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;;
713 "Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
714 "src/Makefile") CONFIG_FILES="$CONFIG_FILES src/Makefile" ;;
715 "clustalo.pc") CONFIG_FILES="$CONFIG_FILES clustalo.pc" ;;
716 "Doxyfile") CONFIG_FILES="$CONFIG_FILES Doxyfile" ;;
717 "src/clustal/Makefile") CONFIG_FILES="$CONFIG_FILES src/clustal/Makefile" ;;
718 "src/hhalign/Makefile") CONFIG_FILES="$CONFIG_FILES src/hhalign/Makefile" ;;
719 "src/kmpp/Makefile") CONFIG_FILES="$CONFIG_FILES src/kmpp/Makefile" ;;
720 "src/squid/Makefile") CONFIG_FILES="$CONFIG_FILES src/squid/Makefile" ;;
722 *) { { $as_echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
723 $as_echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
724 { (exit 1); exit 1; }; };;
729 # If the user did not use the arguments to specify the items to instantiate,
730 # then the envvar interface is used. Set only those that are not.
731 # We use the long form for the default assignment because of an extremely
732 # bizarre bug on SunOS 4.1.3.
733 if $ac_need_defaults; then
734 test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
735 test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
736 test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands
739 # Have a temporary directory for convenience. Make it in the build tree
740 # simply because there is no reason against having it here, and in addition,
741 # creating and moving files from /tmp can sometimes cause problems.
742 # Hook for its removal unless debugging.
743 # Note that there is a small window in which the directory will not be cleaned:
744 # after its creation but before its name has been assigned to `$tmp'.
749 { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status
751 trap '{ (exit 1); exit 1; }' 1 2 13 15
753 # Create a (secure) tmp directory for tmp files.
756 tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
757 test -n "$tmp" && test -d "$tmp"
761 (umask 077 && mkdir "$tmp")
764 $as_echo "$as_me: cannot create a temporary directory in ." >&2
765 { (exit 1); exit 1; }
768 # Set up the scripts for CONFIG_FILES section.
769 # No need to generate them if there are no CONFIG_FILES.
770 # This happens for instance with `./config.status config.h'.
771 if test -n "$CONFIG_FILES"; then
775 ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
776 if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
782 echo 'BEGIN {' >"$tmp/subs1.awk" &&
783 cat >>"$tmp/subs1.awk" <<\_ACAWK &&
787 S["AM_CFLAGS"]=" -O3"
788 S["AM_CXXFLAGS"]=" -O3"
789 S["OPENMP_CXXFLAGS"]="-fopenmp"
790 S["OPENMP_CFLAGS"]="-fopenmp"
792 S["am__fastdepCXX_FALSE"]="#"
793 S["am__fastdepCXX_TRUE"]=""
794 S["CXXDEPMODE"]="depmode=gcc3"
796 S["CXXFLAGS"]="-g -O2"
806 S["OBJDUMP"]="objdump"
808 S["NM"]="/usr/bin/nm -B"
809 S["ac_ct_DUMPBIN"]=""
811 S["LD"]="/usr/bin/ld -m elf_x86_64"
812 S["FGREP"]="/bin/grep -F"
814 S["LIBTOOL"]="$(SHELL) $(top_builddir)/libtool"
815 S["host_os"]="linux-gnu"
816 S["host_vendor"]="unknown"
817 S["host_cpu"]="x86_64"
818 S["host"]="x86_64-unknown-linux-gnu"
819 S["build_os"]="linux-gnu"
820 S["build_vendor"]="unknown"
821 S["build_cpu"]="x86_64"
822 S["build"]="x86_64-unknown-linux-gnu"
823 S["EGREP"]="/bin/grep -E"
824 S["GREP"]="/bin/grep"
826 S["am__fastdepCC_FALSE"]="#"
827 S["am__fastdepCC_TRUE"]=""
828 S["CCDEPMODE"]="depmode=gcc3"
829 S["AMDEPBACKSLASH"]="\\"
833 S["am__include"]="include"
842 S["am__untar"]="${AMTAR} xf -"
843 S["am__tar"]="${AMTAR} chof - \"$$tardir\""
844 S["AMTAR"]="${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run tar"
845 S["am__leading_dot"]="."
848 S["mkdir_p"]="/bin/mkdir -p"
849 S["MKDIR_P"]="/bin/mkdir -p"
850 S["INSTALL_STRIP_PROGRAM"]="$(install_sh) -c -s"
852 S["install_sh"]="$(SHELL) /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/install-sh"
853 S["MAKEINFO"]="${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run makeinfo"
854 S["AUTOHEADER"]="${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run autoheader"
855 S["AUTOMAKE"]="${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run automake-1.10"
856 S["AUTOCONF"]="${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run autoconf"
857 S["ACLOCAL"]="${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run aclocal-1.10"
859 S["PACKAGE"]="clustal-omega"
860 S["CYGPATH_W"]="echo"
862 S["INSTALL_DATA"]="${INSTALL} -m 644"
863 S["INSTALL_SCRIPT"]="${INSTALL}"
864 S["INSTALL_PROGRAM"]="${INSTALL}"
865 S["PACKAGE_CODENAME"]="AndreaGiacomo"
869 S["LIBS"]="-largtable2 -lm "
873 S["DEFS"]="-DHAVE_CONFIG_H"
874 S["mandir"]="${datarootdir}/man"
875 S["localedir"]="${datarootdir}/locale"
876 S["libdir"]="${exec_prefix}/lib"
877 S["psdir"]="${docdir}"
878 S["pdfdir"]="${docdir}"
879 S["dvidir"]="${docdir}"
880 S["htmldir"]="${docdir}"
881 S["infodir"]="${datarootdir}/info"
882 S["docdir"]="${datarootdir}/doc/${PACKAGE_TARNAME}"
883 S["oldincludedir"]="/usr/include"
884 S["includedir"]="${prefix}/include"
885 S["localstatedir"]="${prefix}/var"
886 S["sharedstatedir"]="${prefix}/com"
887 S["sysconfdir"]="${prefix}/etc"
888 S["datadir"]="${datarootdir}"
889 S["datarootdir"]="${prefix}/share"
890 S["libexecdir"]="${exec_prefix}/libexec"
891 S["sbindir"]="${exec_prefix}/sbin"
892 S["bindir"]="${exec_prefix}/bin"
893 S["program_transform_name"]="s,x,x,"
894 S["prefix"]="/usr/local"
895 S["exec_prefix"]="${prefix}"
896 S["PACKAGE_BUGREPORT"]="clustalw@ucd.ie"
897 S["PACKAGE_STRING"]="Clustal Omega 1.2.4"
898 S["PACKAGE_VERSION"]="1.2.4"
899 S["PACKAGE_TARNAME"]="clustal-omega"
900 S["PACKAGE_NAME"]="Clustal Omega"
901 S["PATH_SEPARATOR"]=":"
904 cat >>"$tmp/subs1.awk" <<_ACAWK &&
905 for (key in S) S_is_set[key] = 1
911 nfields = split(line, field, "@")
913 len = length(field[1])
914 for (i = 2; i < nfields; i++) {
919 line = substr(line, 1, len) "" value "" substr(line, len + keylen + 3)
920 len += length(value) + length(field[++i])
930 if sed "s/$ac_cr//" < /dev/null > /dev/null 2>&1; then
931 sed "s/$ac_cr\$//; s/$ac_cr/$ac_cs_awk_cr/g"
934 fi < "$tmp/subs1.awk" > "$tmp/subs.awk" \
935 || { { $as_echo "$as_me:$LINENO: error: could not setup config files machinery" >&5
936 $as_echo "$as_me: error: could not setup config files machinery" >&2;}
937 { (exit 1); exit 1; }; }
938 fi # test -n "$CONFIG_FILES"
940 # Set up the scripts for CONFIG_HEADERS section.
941 # No need to generate them if there are no CONFIG_HEADERS.
942 # This happens for instance with `./config.status Makefile'.
943 if test -n "$CONFIG_HEADERS"; then
944 cat >"$tmp/defines.awk" <<\_ACAWK ||
946 D["PACKAGE_NAME"]=" \"Clustal Omega\""
947 D["PACKAGE_TARNAME"]=" \"clustal-omega\""
948 D["PACKAGE_VERSION"]=" \"1.2.4\""
949 D["PACKAGE_STRING"]=" \"Clustal Omega 1.2.4\""
950 D["PACKAGE_BUGREPORT"]=" \"clustalw@ucd.ie\""
951 D["PACKAGE"]=" \"clustal-omega\""
952 D["VERSION"]=" \"1.2.4\""
953 D["STDC_HEADERS"]=" 1"
954 D["HAVE_SYS_TYPES_H"]=" 1"
955 D["HAVE_SYS_STAT_H"]=" 1"
956 D["HAVE_STDLIB_H"]=" 1"
957 D["HAVE_STRING_H"]=" 1"
958 D["HAVE_MEMORY_H"]=" 1"
959 D["HAVE_STRINGS_H"]=" 1"
960 D["HAVE_INTTYPES_H"]=" 1"
961 D["HAVE_STDINT_H"]=" 1"
962 D["HAVE_UNISTD_H"]=" 1"
963 D["__EXTENSIONS__"]=" 1"
964 D["_ALL_SOURCE"]=" 1"
965 D["_GNU_SOURCE"]=" 1"
966 D["_POSIX_PTHREAD_SEMANTICS"]=" 1"
967 D["_TANDEM_SOURCE"]=" 1"
968 D["HAVE_DLFCN_H"]=" 1"
969 D["LT_OBJDIR"]=" \".libs/\""
971 D["PACKAGE_CODENAME"]=" \"AndreaGiacomo\""
973 D["STDC_HEADERS"]=" 1"
974 D["HAVE_ASSERT_H"]=" 1"
975 D["HAVE_CTYPE_H"]=" 1"
976 D["HAVE_FLOAT_H"]=" 1"
977 D["HAVE_LIMITS_H"]=" 1"
978 D["HAVE_MATH_H"]=" 1"
979 D["HAVE_MEMORY_H"]=" 1"
980 D["HAVE_STDARG_H"]=" 1"
981 D["HAVE_STDIO_H"]=" 1"
982 D["HAVE_STDLIB_H"]=" 1"
983 D["HAVE_STRING_H"]=" 1"
984 D["HAVE_TIME_H"]=" 1"
985 D["HAVE_UNISTD_H"]=" 1"
988 D["HAVE_ARGTABLE2_H"]=" 1"
989 D["HAVE_LIBARGTABLE2"]=" 1"
990 D["HAVE_OPENMP"]=" 1"
993 D["SIZEOF_UNSIGNED_SHORT"]=" 2"
994 D["SIZEOF_UNSIGNED_INT"]=" 4"
995 D["SIZEOF_UNSIGNED_LONG"]=" 8"
996 D["SIZEOF_UNSIGNED_LONG_LONG"]=" 8"
997 D["HAVE_STRTOULL"]=" 1"
998 D["HAVE_FTELLO"]=" 1"
999 D["HAVE_FSEEKO"]=" 1"
1000 D["HAVE_FTELLO64"]=" 1"
1001 D["HAVE_FSEEKO64"]=" 1"
1002 D["SIZEOF_FPOS_T"]=" 16"
1004 for (key in D) D_is_set[key] = 1
1007 /^[\t ]*#[\t ]*(define|undef)[\t ]+[_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ][_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]*([\t (]|$)/ {
1009 split(line, arg, " ")
1010 if (arg[1] == "#") {
1014 defundef = substr(arg[1], 2)
1017 split(mac1, mac2, "(") #)
1019 prefix = substr(line, 1, index(line, defundef) - 1)
1020 if (D_is_set[macro]) {
1021 # Preserve the white space surrounding the "#".
1022 print prefix "define", macro P[macro] D[macro]
1025 # Replace #undef with comments. This is necessary, for example,
1026 # in the case of _POSIX_SOURCE, which is predefined and required
1027 # on some systems where configure will not decide to define it.
1028 if (defundef == "undef") {
1029 print "/*", prefix defundef, macro, "*/"
1036 { { $as_echo "$as_me:$LINENO: error: could not setup config headers machinery" >&5
1037 $as_echo "$as_me: error: could not setup config headers machinery" >&2;}
1038 { (exit 1); exit 1; }; }
1039 fi # test -n "$CONFIG_HEADERS"
1042 eval set X " :F $CONFIG_FILES :H $CONFIG_HEADERS :C $CONFIG_COMMANDS"
1047 :[FHLC]) ac_mode=$ac_tag; continue;;
1049 case $ac_mode$ac_tag in
1051 :L* | :C*:*) { { $as_echo "$as_me:$LINENO: error: invalid tag $ac_tag" >&5
1052 $as_echo "$as_me: error: invalid tag $ac_tag" >&2;}
1053 { (exit 1); exit 1; }; };;
1054 :[FH]-) ac_tag=-:-;;
1055 :[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
1072 -) ac_f="$tmp/stdin";;
1073 *) # Look for the file first in the build tree, then in the source tree
1074 # (if the path is not absolute). The absolute path cannot be DOS-style,
1075 # because $ac_f cannot contain `:'.
1079 *) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
1081 { { $as_echo "$as_me:$LINENO: error: cannot find input file: $ac_f" >&5
1082 $as_echo "$as_me: error: cannot find input file: $ac_f" >&2;}
1083 { (exit 1); exit 1; }; };;
1085 case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
1086 ac_file_inputs="$ac_file_inputs '$ac_f'"
1089 # Let's still pretend it is `configure' which instantiates (i.e., don't
1090 # use $as_me), people would be surprised to read:
1091 # /* config.h. Generated by config.status. */
1092 configure_input='Generated from '`
1093 $as_echo "$*" | sed 's|^[^:]*/||;s|:[^:]*/|, |g'
1095 if test x"$ac_file" != x-; then
1096 configure_input="$ac_file. $configure_input"
1097 { $as_echo "$as_me:$LINENO: creating $ac_file" >&5
1098 $as_echo "$as_me: creating $ac_file" >&6;}
1100 # Neutralize special characters interpreted by sed in replacement strings.
1101 case $configure_input in #(
1102 *\&* | *\|* | *\\* )
1103 ac_sed_conf_input=`$as_echo "$configure_input" |
1104 sed 's/[\\\\&|]/\\\\&/g'`;; #(
1105 *) ac_sed_conf_input=$configure_input;;
1109 *:-:* | *:-) cat >"$tmp/stdin" \
1110 || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
1111 $as_echo "$as_me: error: could not create $ac_file" >&2;}
1112 { (exit 1); exit 1; }; } ;;
1117 ac_dir=`$as_dirname -- "$ac_file" ||
1118 $as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
1119 X"$ac_file" : 'X\(//\)[^/]' \| \
1120 X"$ac_file" : 'X\(//\)$' \| \
1121 X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
1122 $as_echo X"$ac_file" |
1123 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
1142 -*) as_dir=./$as_dir;;
1144 test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
1148 *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
1149 *) as_qdir=$as_dir;;
1151 as_dirs="'$as_qdir' $as_dirs"
1152 as_dir=`$as_dirname -- "$as_dir" ||
1153 $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
1154 X"$as_dir" : 'X\(//\)[^/]' \| \
1155 X"$as_dir" : 'X\(//\)$' \| \
1156 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
1157 $as_echo X"$as_dir" |
1158 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
1175 test -d "$as_dir" && break
1177 test -z "$as_dirs" || eval "mkdir $as_dirs"
1178 } || test -d "$as_dir" || { { $as_echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
1179 $as_echo "$as_me: error: cannot create directory $as_dir" >&2;}
1180 { (exit 1); exit 1; }; }; }
1184 .) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
1186 ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
1187 # A ".." for each directory in $ac_dir_suffix.
1188 ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
1189 case $ac_top_builddir_sub in
1190 "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
1191 *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
1194 ac_abs_top_builddir=$ac_pwd
1195 ac_abs_builddir=$ac_pwd$ac_dir_suffix
1196 # for backward compatibility:
1197 ac_top_builddir=$ac_top_build_prefix
1200 .) # We are building in place.
1202 ac_top_srcdir=$ac_top_builddir_sub
1203 ac_abs_top_srcdir=$ac_pwd ;;
1204 [\\/]* | ?:[\\/]* ) # Absolute name.
1205 ac_srcdir=$srcdir$ac_dir_suffix;
1206 ac_top_srcdir=$srcdir
1207 ac_abs_top_srcdir=$srcdir ;;
1209 ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
1210 ac_top_srcdir=$ac_top_build_prefix$srcdir
1211 ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
1213 ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
1223 [\\/$]* | ?:[\\/]* ) ac_INSTALL=$INSTALL ;;
1224 *) ac_INSTALL=$ac_top_build_prefix$INSTALL ;;
1228 [\\/$]* | ?:[\\/]* ) ;;
1229 */*) ac_MKDIR_P=$ac_top_build_prefix$MKDIR_P ;;
1231 # If the template does not know about datarootdir, expand it.
1232 # FIXME: This hack should be removed a few years after 2.60.
1233 ac_datarootdir_hack=; ac_datarootdir_seen=
1246 case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
1247 *datarootdir*) ac_datarootdir_seen=yes;;
1248 *@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
1249 { $as_echo "$as_me:$LINENO: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
1250 $as_echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
1251 ac_datarootdir_hack='
1252 s&@datadir@&${datarootdir}&g
1253 s&@docdir@&${datarootdir}/doc/${PACKAGE_TARNAME}&g
1254 s&@infodir@&${datarootdir}/info&g
1255 s&@localedir@&${datarootdir}/locale&g
1256 s&@mandir@&${datarootdir}/man&g
1257 s&\${datarootdir}&${prefix}/share&g' ;;
1259 ac_sed_extra="/^[ ]*VPATH[ ]*=/{
1263 s/^\([^=]*=[ ]*\):*/\1/
1269 /@[a-zA-Z_][a-zA-Z_0-9]*@/!b
1270 s|@configure_input@|$ac_sed_conf_input|;t t
1271 s&@top_builddir@&$ac_top_builddir_sub&;t t
1272 s&@top_build_prefix@&$ac_top_build_prefix&;t t
1273 s&@srcdir@&$ac_srcdir&;t t
1274 s&@abs_srcdir@&$ac_abs_srcdir&;t t
1275 s&@top_srcdir@&$ac_top_srcdir&;t t
1276 s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t
1277 s&@builddir@&$ac_builddir&;t t
1278 s&@abs_builddir@&$ac_abs_builddir&;t t
1279 s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
1280 s&@INSTALL@&$ac_INSTALL&;t t
1281 s&@MKDIR_P@&$ac_MKDIR_P&;t t
1282 $ac_datarootdir_hack
1284 eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$tmp/subs.awk" >$tmp/out \
1285 || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
1286 $as_echo "$as_me: error: could not create $ac_file" >&2;}
1287 { (exit 1); exit 1; }; }
1289 test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
1290 { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
1291 { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
1292 { $as_echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
1293 which seems to be undefined. Please make sure it is defined." >&5
1294 $as_echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
1295 which seems to be undefined. Please make sure it is defined." >&2;}
1299 -) cat "$tmp/out" && rm -f "$tmp/out";;
1300 *) rm -f "$ac_file" && mv "$tmp/out" "$ac_file";;
1302 || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
1303 $as_echo "$as_me: error: could not create $ac_file" >&2;}
1304 { (exit 1); exit 1; }; }
1310 if test x"$ac_file" != x-; then
1312 $as_echo "/* $configure_input */" \
1313 && eval '$AWK -f "$tmp/defines.awk"' "$ac_file_inputs"
1314 } >"$tmp/config.h" \
1315 || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
1316 $as_echo "$as_me: error: could not create $ac_file" >&2;}
1317 { (exit 1); exit 1; }; }
1318 if diff "$ac_file" "$tmp/config.h" >/dev/null 2>&1; then
1319 { $as_echo "$as_me:$LINENO: $ac_file is unchanged" >&5
1320 $as_echo "$as_me: $ac_file is unchanged" >&6;}
1323 mv "$tmp/config.h" "$ac_file" \
1324 || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
1325 $as_echo "$as_me: error: could not create $ac_file" >&2;}
1326 { (exit 1); exit 1; }; }
1329 $as_echo "/* $configure_input */" \
1330 && eval '$AWK -f "$tmp/defines.awk"' "$ac_file_inputs" \
1331 || { { $as_echo "$as_me:$LINENO: error: could not create -" >&5
1332 $as_echo "$as_me: error: could not create -" >&2;}
1333 { (exit 1); exit 1; }; }
1335 # Compute "$ac_file"'s index in $config_headers.
1338 for _am_header in $config_headers :; do
1340 $_am_arg | $_am_arg:* )
1343 _am_stamp_count=`expr $_am_stamp_count + 1` ;;
1346 echo "timestamp for $_am_arg" >`$as_dirname -- "$_am_arg" ||
1347 $as_expr X"$_am_arg" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
1348 X"$_am_arg" : 'X\(//\)[^/]' \| \
1349 X"$_am_arg" : 'X\(//\)$' \| \
1350 X"$_am_arg" : 'X\(/\)' \| . 2>/dev/null ||
1351 $as_echo X"$_am_arg" |
1352 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
1368 s/.*/./; q'`/stamp-h$_am_stamp_count
1371 :C) { $as_echo "$as_me:$LINENO: executing $ac_file commands" >&5
1372 $as_echo "$as_me: executing $ac_file commands" >&6;}
1377 case $ac_file$ac_mode in
1378 "src/clustal-omega-config.h":C) ac_prefix_conf_OUT=`echo src/clustal-omega-config.h`
1379 ac_prefix_conf_DEF=`echo _$ac_prefix_conf_OUT | sed -e "y:abcdefghijklmnopqrstuvwxyz:ABCDEFGHIJKLMNOPQRSTUVWXYZ:" -e "s/[^abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ]/_/g"`
1380 ac_prefix_conf_PKG=`echo $PACKAGE`
1381 ac_prefix_conf_LOW=`echo _$ac_prefix_conf_PKG | sed -e "y:ABCDEFGHIJKLMNOPQRSTUVWXYZ-:abcdefghijklmnopqrstuvwxyz_:"`
1382 ac_prefix_conf_UPP=`echo $ac_prefix_conf_PKG | sed -e "y:abcdefghijklmnopqrstuvwxyz-:ABCDEFGHIJKLMNOPQRSTUVWXYZ_:" -e "/^[0123456789]/s/^/_/"`
1383 ac_prefix_conf_INP=`echo "" | sed -e 's/ *//'`
1384 if test ".$ac_prefix_conf_INP" = "."; then
1385 for ac_file in : $CONFIG_HEADERS; do test "_$ac_file" = _: && continue
1387 *.h) ac_prefix_conf_INP=$ac_file ;;
1390 test ".$ac_prefix_conf_INP" != "." && break
1393 if test ".$ac_prefix_conf_INP" = "."; then
1394 case "$ac_prefix_conf_OUT" in
1395 */*) ac_prefix_conf_INP=`basename "$ac_prefix_conf_OUT"`
1397 *-*) ac_prefix_conf_INP=`echo "$ac_prefix_conf_OUT" | sed -e "s/[abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789_]*-//"`
1399 *) ac_prefix_conf_INP=config.h
1403 if test -z "$ac_prefix_conf_PKG" ; then
1404 { { $as_echo "$as_me:$LINENO: error: no prefix for _PREFIX_PKG_CONFIG_H" >&5
1405 $as_echo "$as_me: error: no prefix for _PREFIX_PKG_CONFIG_H" >&2;}
1406 { (exit 1); exit 1; }; }
1408 if test ! -f "$ac_prefix_conf_INP" ; then if test -f "$srcdir/$ac_prefix_conf_INP" ; then
1409 ac_prefix_conf_INP="$srcdir/$ac_prefix_conf_INP"
1411 { $as_echo "$as_me:$LINENO: creating $ac_prefix_conf_OUT - prefix $ac_prefix_conf_UPP for $ac_prefix_conf_INP defines" >&5
1412 $as_echo "$as_me: creating $ac_prefix_conf_OUT - prefix $ac_prefix_conf_UPP for $ac_prefix_conf_INP defines" >&6;}
1413 if test -f $ac_prefix_conf_INP ; then
1414 $as_echo "s/^#undef *\\([ABCDEFGHIJKLMNOPQRSTUVWXYZ_]\\)/#undef $ac_prefix_conf_UPP""_\\1/" > conftest.prefix
1415 $as_echo "s/^#undef *\\([abcdefghijklmnopqrstuvwxyz]\\)/#undef $ac_prefix_conf_LOW""_\\1/" >> conftest.prefix
1416 $as_echo "s/^#define *\\([ABCDEFGHIJKLMNOPQRSTUVWXYZ_][abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789_]*\\)\\(.*\\)/#ifndef $ac_prefix_conf_UPP""_\\1\\" >> conftest.prefix
1417 $as_echo "#define $ac_prefix_conf_UPP""_\\1\\2\\" >> conftest.prefix
1418 $as_echo "#endif/" >> conftest.prefix
1419 $as_echo "s/^#define *\\([abcdefghijklmnopqrstuvwxyz][abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789_]*\\)\\(.*\\)/#ifndef $ac_prefix_conf_LOW""_\\1\\" >> conftest.prefix
1420 $as_echo "#define $ac_prefix_conf_LOW""_\\1\\2\\" >> conftest.prefix
1421 $as_echo "#endif/" >> conftest.prefix
1422 # now executing _script on _DEF input to create _OUT output file
1423 echo "#ifndef $ac_prefix_conf_DEF" >$tmp/pconfig.h
1424 echo "#define $ac_prefix_conf_DEF 1" >>$tmp/pconfig.h
1425 echo ' ' >>$tmp/pconfig.h
1426 echo /'*' $ac_prefix_conf_OUT. Generated automatically at end of configure. '*'/ >>$tmp/pconfig.h
1428 sed -f conftest.prefix $ac_prefix_conf_INP >>$tmp/pconfig.h
1429 echo ' ' >>$tmp/pconfig.h
1430 echo '/* once:' $ac_prefix_conf_DEF '*/' >>$tmp/pconfig.h
1431 echo "#endif" >>$tmp/pconfig.h
1432 if cmp -s $ac_prefix_conf_OUT $tmp/pconfig.h 2>/dev/null; then
1433 { $as_echo "$as_me:$LINENO: $ac_prefix_conf_OUT is unchanged" >&5
1434 $as_echo "$as_me: $ac_prefix_conf_OUT is unchanged" >&6;}
1436 ac_dir=`$as_dirname -- "$ac_prefix_conf_OUT" ||
1437 $as_expr X"$ac_prefix_conf_OUT" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
1438 X"$ac_prefix_conf_OUT" : 'X\(//\)[^/]' \| \
1439 X"$ac_prefix_conf_OUT" : 'X\(//\)$' \| \
1440 X"$ac_prefix_conf_OUT" : 'X\(/\)' \| . 2>/dev/null ||
1441 $as_echo X"$ac_prefix_conf_OUT" |
1442 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
1461 -*) as_dir=./$as_dir;;
1463 test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
1467 *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
1468 *) as_qdir=$as_dir;;
1470 as_dirs="'$as_qdir' $as_dirs"
1471 as_dir=`$as_dirname -- "$as_dir" ||
1472 $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
1473 X"$as_dir" : 'X\(//\)[^/]' \| \
1474 X"$as_dir" : 'X\(//\)$' \| \
1475 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
1476 $as_echo X"$as_dir" |
1477 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
1494 test -d "$as_dir" && break
1496 test -z "$as_dirs" || eval "mkdir $as_dirs"
1497 } || test -d "$as_dir" || { { $as_echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
1498 $as_echo "$as_me: error: cannot create directory $as_dir" >&2;}
1499 { (exit 1); exit 1; }; }; }
1500 rm -f "$ac_prefix_conf_OUT"
1501 mv $tmp/pconfig.h "$ac_prefix_conf_OUT"
1503 cp conftest.prefix _configs.sed
1505 { { $as_echo "$as_me:$LINENO: error: input file $ac_prefix_conf_INP does not exist - skip generating $ac_prefix_conf_OUT" >&5
1506 $as_echo "$as_me: error: input file $ac_prefix_conf_INP does not exist - skip generating $ac_prefix_conf_OUT" >&2;}
1507 { (exit 1); exit 1; }; }
1512 "depfiles":C) test x"$AMDEP_TRUE" != x"" || {
1513 # Autoconf 2.62 quotes --file arguments for eval, but not when files
1514 # are listed without --file. Let's play safe and only enable the eval
1515 # if we detect the quoting.
1516 case $CONFIG_FILES in
1517 *\'*) eval set x "$CONFIG_FILES" ;;
1518 *) set x $CONFIG_FILES ;;
1523 # Strip MF so we end up with the name of the file.
1524 mf=`echo "$mf" | sed -e 's/:.*$//'`
1525 # Check whether this is an Automake generated Makefile or not.
1526 # We used to match only the files named `Makefile.in', but
1527 # some people rename them; so instead we look at the file content.
1528 # Grep'ing the first line is not enough: some people post-process
1529 # each Makefile.in and add a new line on top of each file to say so.
1530 # Grep'ing the whole file is not good either: AIX grep has a line
1531 # limit of 2048, but all sed's we know have understand at least 4000.
1532 if sed -n 's,^#.*generated by automake.*,X,p' "$mf" | grep X >/dev/null 2>&1; then
1533 dirpart=`$as_dirname -- "$mf" ||
1534 $as_expr X"$mf" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
1535 X"$mf" : 'X\(//\)[^/]' \| \
1536 X"$mf" : 'X\(//\)$' \| \
1537 X"$mf" : 'X\(/\)' \| . 2>/dev/null ||
1539 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
1559 # Extract the definition of DEPDIR, am__include, and am__quote
1560 # from the Makefile without running `make'.
1561 DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
1562 test -z "$DEPDIR" && continue
1563 am__include=`sed -n 's/^am__include = //p' < "$mf"`
1564 test -z "am__include" && continue
1565 am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
1566 # When using ansi2knr, U may be empty or an underscore; expand it
1567 U=`sed -n 's/^U = //p' < "$mf"`
1568 # Find all dependency output files, they are included files with
1569 # $(DEPDIR) in their names. We invoke sed twice because it is the
1570 # simplest approach to changing $(DEPDIR) to its actual value in the
1572 for file in `sed -n "
1573 s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \
1574 sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do
1575 # Make sure the directory exists.
1576 test -f "$dirpart/$file" && continue
1577 fdir=`$as_dirname -- "$file" ||
1578 $as_expr X"$file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
1579 X"$file" : 'X\(//\)[^/]' \| \
1580 X"$file" : 'X\(//\)$' \| \
1581 X"$file" : 'X\(/\)' \| . 2>/dev/null ||
1583 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
1600 { as_dir=$dirpart/$fdir
1602 -*) as_dir=./$as_dir;;
1604 test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
1608 *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
1609 *) as_qdir=$as_dir;;
1611 as_dirs="'$as_qdir' $as_dirs"
1612 as_dir=`$as_dirname -- "$as_dir" ||
1613 $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
1614 X"$as_dir" : 'X\(//\)[^/]' \| \
1615 X"$as_dir" : 'X\(//\)$' \| \
1616 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
1617 $as_echo X"$as_dir" |
1618 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
1635 test -d "$as_dir" && break
1637 test -z "$as_dirs" || eval "mkdir $as_dirs"
1638 } || test -d "$as_dir" || { { $as_echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
1639 $as_echo "$as_me: error: cannot create directory $as_dir" >&2;}
1640 { (exit 1); exit 1; }; }; }
1641 # echo "creating $dirpart/$file"
1642 echo '# dummy' > "$dirpart/$file"
1649 # See if we are running on zsh, and set the options which allow our
1650 # commands through without removal of \ escapes.
1651 if test -n "${ZSH_VERSION+set}" ; then
1652 setopt NO_GLOB_SUBST
1656 trap "$RM \"$cfgfile\"; exit 1" 1 2 15
1659 cat <<_LT_EOF >> "$cfgfile"
1662 # `$ECHO "$ofile" | sed 's%^.*/%%'` - Provide generalized library-building support services.
1663 # Generated automatically by $as_me ($PACKAGE$TIMESTAMP) $VERSION
1664 # Libtool was configured on host `(hostname || uname -n) 2>/dev/null | sed 1q`:
1665 # NOTE: Changes made to this file will be lost: look at ltmain.sh.
1667 # Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005,
1668 # 2006, 2007, 2008 Free Software Foundation, Inc.
1669 # Written by Gordon Matzigkeit, 1996
1671 # This file is part of GNU Libtool.
1673 # GNU Libtool is free software; you can redistribute it and/or
1674 # modify it under the terms of the GNU General Public License as
1675 # published by the Free Software Foundation; either version 2 of
1676 # the License, or (at your option) any later version.
1678 # As a special exception to the GNU General Public License,
1679 # if you distribute this file as part of a program or library that
1680 # is built using GNU Libtool, you may include this file under the
1681 # same distribution terms that you use for the rest of that program.
1683 # GNU Libtool is distributed in the hope that it will be useful,
1684 # but WITHOUT ANY WARRANTY; without even the implied warranty of
1685 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
1686 # GNU General Public License for more details.
1688 # You should have received a copy of the GNU General Public License
1689 # along with GNU Libtool; see the file COPYING. If not, a copy
1690 # can be downloaded from http://www.gnu.org/licenses/gpl.html, or
1691 # obtained by writing to the Free Software Foundation, Inc.,
1692 # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
1695 # The names of the tagged configurations supported by this script.
1696 available_tags="CXX "
1698 # ### BEGIN LIBTOOL CONFIG
1700 # Which release of libtool.m4 was used?
1701 macro_version=$macro_version
1702 macro_revision=$macro_revision
1704 # Whether or not to build shared libraries.
1705 build_libtool_libs=$enable_shared
1707 # Whether or not to build static libraries.
1708 build_old_libs=$enable_static
1710 # What type of objects to build.
1713 # Whether or not to optimize for fast installation.
1714 fast_install=$enable_fast_install
1717 host_alias=$host_alias
1722 build_alias=$build_alias
1726 # A sed program that does not truncate output.
1729 # Sed that helps us avoid accidentally triggering echo(1) options like -n.
1730 Xsed="\$SED -e 1s/^X//"
1732 # A grep program that handles long lines.
1738 # A literal string matcher.
1741 # A BSD- or MS-compatible name lister.
1744 # Whether we need soft or hard links.
1747 # What is the maximum length of a command?
1748 max_cmd_len=$max_cmd_len
1750 # Object file suffix (normally "o").
1753 # Executable file suffix (normally "").
1756 # whether the shell understands "unset".
1759 # turn spaces into newlines.
1762 # turn newlines into spaces.
1765 # How to create reloadable object files.
1766 reload_flag=$lt_reload_flag
1767 reload_cmds=$lt_reload_cmds
1769 # An object symbol dumper.
1772 # Method to check whether dependent libraries are shared objects.
1773 deplibs_check_method=$lt_deplibs_check_method
1775 # Command to use when deplibs_check_method == "file_magic".
1776 file_magic_cmd=$lt_file_magic_cmd
1780 AR_FLAGS=$lt_AR_FLAGS
1782 # A symbol stripping program.
1785 # Commands used to install an old-style archive.
1787 old_postinstall_cmds=$lt_old_postinstall_cmds
1788 old_postuninstall_cmds=$lt_old_postuninstall_cmds
1793 # LTCC compiler flags.
1796 # Take the output of nm and produce a listing of raw symbols and C names.
1797 global_symbol_pipe=$lt_lt_cv_sys_global_symbol_pipe
1799 # Transform the output of nm in a proper C declaration.
1800 global_symbol_to_cdecl=$lt_lt_cv_sys_global_symbol_to_cdecl
1802 # Transform the output of nm in a C name address pair.
1803 global_symbol_to_c_name_address=$lt_lt_cv_sys_global_symbol_to_c_name_address
1805 # Transform the output of nm in a C name address pair when lib prefix is needed.
1806 global_symbol_to_c_name_address_lib_prefix=$lt_lt_cv_sys_global_symbol_to_c_name_address_lib_prefix
1808 # The name of the directory that contains temporary libtool files.
1811 # Shell to use when invoking shell scripts.
1814 # An echo program that does not interpret backslashes.
1817 # Used to examine libraries when file_magic_cmd begins with "file".
1818 MAGIC_CMD=$MAGIC_CMD
1820 # Must we lock files when doing compilation?
1821 need_locks=$lt_need_locks
1823 # Tool to manipulate archived DWARF debug symbol files on Mac OS X.
1824 DSYMUTIL=$lt_DSYMUTIL
1826 # Tool to change global to local symbols on Mac OS X.
1829 # Tool to manipulate fat objects and archives on Mac OS X.
1832 # ldd/readelf like tool for Mach-O binaries on Mac OS X.
1835 # ldd/readelf like tool for 64 bit Mach-O binaries on Mac OS X 10.4.
1838 # Old archive suffix (normally "a").
1841 # Shared library suffix (normally ".so").
1842 shrext_cmds=$lt_shrext_cmds
1844 # The commands to extract the exported symbol list from a shared archive.
1845 extract_expsyms_cmds=$lt_extract_expsyms_cmds
1847 # Variables whose values should be saved in libtool wrapper scripts and
1848 # restored at link time.
1849 variables_saved_for_relink=$lt_variables_saved_for_relink
1851 # Do we need the "lib" prefix for modules?
1852 need_lib_prefix=$need_lib_prefix
1854 # Do we need a version for libraries?
1855 need_version=$need_version
1857 # Library versioning type.
1858 version_type=$version_type
1860 # Shared library runtime path variable.
1861 runpath_var=$runpath_var
1863 # Shared library path variable.
1864 shlibpath_var=$shlibpath_var
1866 # Is shlibpath searched before the hard-coded library search path?
1867 shlibpath_overrides_runpath=$shlibpath_overrides_runpath
1869 # Format of library name prefix.
1870 libname_spec=$lt_libname_spec
1872 # List of archive names. First name is the real one, the rest are links.
1873 # The last name is the one that the linker finds with -lNAME
1874 library_names_spec=$lt_library_names_spec
1876 # The coded name of the library, if different from the real name.
1877 soname_spec=$lt_soname_spec
1879 # Command to use after installation of a shared archive.
1880 postinstall_cmds=$lt_postinstall_cmds
1882 # Command to use after uninstallation of a shared archive.
1883 postuninstall_cmds=$lt_postuninstall_cmds
1885 # Commands used to finish a libtool library installation in a directory.
1886 finish_cmds=$lt_finish_cmds
1888 # As "finish_cmds", except a single script fragment to be evaled but
1890 finish_eval=$lt_finish_eval
1892 # Whether we should hardcode library paths into libraries.
1893 hardcode_into_libs=$hardcode_into_libs
1895 # Compile-time system search path for libraries.
1896 sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
1898 # Run-time system search path for libraries.
1899 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
1901 # Whether dlopen is supported.
1902 dlopen_support=$enable_dlopen
1904 # Whether dlopen of programs is supported.
1905 dlopen_self=$enable_dlopen_self
1907 # Whether dlopen of statically linked programs is supported.
1908 dlopen_self_static=$enable_dlopen_self_static
1910 # Commands to strip libraries.
1911 old_striplib=$lt_old_striplib
1912 striplib=$lt_striplib
1915 # The linker used to build libraries.
1918 # Commands used to build an old-style archive.
1919 old_archive_cmds=$lt_old_archive_cmds
1921 # A language specific compiler.
1924 # Is the compiler the GNU compiler?
1927 # Compiler flag to turn off builtin functions.
1928 no_builtin_flag=$lt_lt_prog_compiler_no_builtin_flag
1930 # How to pass a linker flag through the compiler.
1931 wl=$lt_lt_prog_compiler_wl
1933 # Additional compiler flags for building library objects.
1934 pic_flag=$lt_lt_prog_compiler_pic
1936 # Compiler flag to prevent dynamic linking.
1937 link_static_flag=$lt_lt_prog_compiler_static
1939 # Does compiler simultaneously support -c and -o options?
1940 compiler_c_o=$lt_lt_cv_prog_compiler_c_o
1942 # Whether or not to add -lc for building shared libraries.
1943 build_libtool_need_lc=$archive_cmds_need_lc
1945 # Whether or not to disallow shared libs when runtime libs are static.
1946 allow_libtool_libs_with_static_runtimes=$enable_shared_with_static_runtimes
1948 # Compiler flag to allow reflexive dlopens.
1949 export_dynamic_flag_spec=$lt_export_dynamic_flag_spec
1951 # Compiler flag to generate shared objects directly from archives.
1952 whole_archive_flag_spec=$lt_whole_archive_flag_spec
1954 # Whether the compiler copes with passing no objects directly.
1955 compiler_needs_object=$lt_compiler_needs_object
1957 # Create an old-style archive from a shared archive.
1958 old_archive_from_new_cmds=$lt_old_archive_from_new_cmds
1960 # Create a temporary old-style archive to link instead of a shared archive.
1961 old_archive_from_expsyms_cmds=$lt_old_archive_from_expsyms_cmds
1963 # Commands used to build a shared archive.
1964 archive_cmds=$lt_archive_cmds
1965 archive_expsym_cmds=$lt_archive_expsym_cmds
1967 # Commands used to build a loadable module if different from building
1969 module_cmds=$lt_module_cmds
1970 module_expsym_cmds=$lt_module_expsym_cmds
1972 # Whether we are building with GNU ld or not.
1973 with_gnu_ld=$lt_with_gnu_ld
1975 # Flag that allows shared libraries with undefined symbols to be built.
1976 allow_undefined_flag=$lt_allow_undefined_flag
1978 # Flag that enforces no undefined symbols.
1979 no_undefined_flag=$lt_no_undefined_flag
1981 # Flag to hardcode \$libdir into a binary during linking.
1982 # This must work even if \$libdir does not exist
1983 hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec
1985 # If ld is used when linking, flag to hardcode \$libdir into a binary
1986 # during linking. This must work even if \$libdir does not exist.
1987 hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld
1989 # Whether we need a single "-rpath" flag with a separated argument.
1990 hardcode_libdir_separator=$lt_hardcode_libdir_separator
1992 # Set to "yes" if using DIR/libNAME\${shared_ext} during linking hardcodes
1993 # DIR into the resulting binary.
1994 hardcode_direct=$hardcode_direct
1996 # Set to "yes" if using DIR/libNAME\${shared_ext} during linking hardcodes
1997 # DIR into the resulting binary and the resulting library dependency is
1998 # "absolute",i.e impossible to change by setting \${shlibpath_var} if the
1999 # library is relocated.
2000 hardcode_direct_absolute=$hardcode_direct_absolute
2002 # Set to "yes" if using the -LDIR flag during linking hardcodes DIR
2003 # into the resulting binary.
2004 hardcode_minus_L=$hardcode_minus_L
2006 # Set to "yes" if using SHLIBPATH_VAR=DIR during linking hardcodes DIR
2007 # into the resulting binary.
2008 hardcode_shlibpath_var=$hardcode_shlibpath_var
2010 # Set to "yes" if building a shared library automatically hardcodes DIR
2011 # into the library and all subsequent libraries and executables linked
2013 hardcode_automatic=$hardcode_automatic
2015 # Set to yes if linker adds runtime paths of dependent libraries
2016 # to runtime path list.
2017 inherit_rpath=$inherit_rpath
2019 # Whether libtool must link a program against all its dependency libraries.
2020 link_all_deplibs=$link_all_deplibs
2022 # Fix the shell variable \$srcfile for the compiler.
2023 fix_srcfile_path=$lt_fix_srcfile_path
2025 # Set to "yes" if exported symbols are required.
2026 always_export_symbols=$always_export_symbols
2028 # The commands to list exported symbols.
2029 export_symbols_cmds=$lt_export_symbols_cmds
2031 # Symbols that should not be listed in the preloaded symbols.
2032 exclude_expsyms=$lt_exclude_expsyms
2034 # Symbols that must always be exported.
2035 include_expsyms=$lt_include_expsyms
2037 # Commands necessary for linking programs (against libraries) with templates.
2038 prelink_cmds=$lt_prelink_cmds
2040 # Specify filename containing input files.
2041 file_list_spec=$lt_file_list_spec
2043 # How to hardcode a shared library path into an executable.
2044 hardcode_action=$hardcode_action
2046 # The directories searched by this compiler when creating a shared library.
2047 compiler_lib_search_dirs=$lt_compiler_lib_search_dirs
2049 # Dependencies to place before and after the objects being linked to
2050 # create a shared library.
2051 predep_objects=$lt_predep_objects
2052 postdep_objects=$lt_postdep_objects
2054 postdeps=$lt_postdeps
2056 # The library search path used internally by the compiler when linking
2058 compiler_lib_search_path=$lt_compiler_lib_search_path
2060 # ### END LIBTOOL CONFIG
2066 cat <<\_LT_EOF >> "$cfgfile"
2067 # AIX sometimes has problems with the GCC collect2 program. For some
2068 # reason, if we set the COLLECT_NAMES environment variable, the problems
2069 # vanish in a puff of smoke.
2070 if test "X${COLLECT_NAMES+set}" != Xset; then
2072 export COLLECT_NAMES
2079 ltmain="$ac_aux_dir/ltmain.sh"
2082 # We use sed instead of cat because bash on DJGPP gets confused if
2083 # if finds mixed CR/LF and LF-only lines. Since sed operates in
2084 # text mode, it properly converts lines to CR/LF. This bash problem
2085 # is reportedly fixed, but why not run on old versions too?
2086 sed '/^# Generated shell functions inserted here/q' "$ltmain" >> "$cfgfile" \
2087 || (rm -f "$cfgfile"; exit 1)
2091 cat << \_LT_EOF >> "$cfgfile"
2093 # func_dirname file append nondir_replacement
2094 # Compute the dirname of FILE. If nonempty, add APPEND to the result,
2095 # otherwise set result to NONDIR_REPLACEMENT.
2099 */*) func_dirname_result="${1%/*}${2}" ;;
2100 * ) func_dirname_result="${3}" ;;
2104 # func_basename file
2107 func_basename_result="${1##*/}"
2110 # func_dirname_and_basename file append nondir_replacement
2111 # perform func_basename and func_dirname in a single function
2113 # dirname: Compute the dirname of FILE. If nonempty,
2114 # add APPEND to the result, otherwise set result
2115 # to NONDIR_REPLACEMENT.
2116 # value returned in "$func_dirname_result"
2117 # basename: Compute filename of FILE.
2118 # value retuned in "$func_basename_result"
2119 # Implementation must be kept synchronized with func_dirname
2120 # and func_basename. For efficiency, we do not delegate to
2121 # those functions but instead duplicate the functionality here.
2122 func_dirname_and_basename ()
2125 */*) func_dirname_result="${1%/*}${2}" ;;
2126 * ) func_dirname_result="${3}" ;;
2128 func_basename_result="${1##*/}"
2131 # func_stripname prefix suffix name
2132 # strip PREFIX and SUFFIX off of NAME.
2133 # PREFIX and SUFFIX must not contain globbing or regex special
2134 # characters, hashes, percent signs, but SUFFIX may contain a leading
2135 # dot (in which case that matches only a dot).
2138 # pdksh 5.2.14 does not do ${X%$Y} correctly if both X and Y are
2139 # positional parameters, so assign one to ordinary parameter first.
2140 func_stripname_result=${3}
2141 func_stripname_result=${func_stripname_result#"${1}"}
2142 func_stripname_result=${func_stripname_result%"${2}"}
2148 func_opt_split_opt=${1%%=*}
2149 func_opt_split_arg=${1#*=}
2156 *.lo) func_lo2o_result=${1%.lo}.${objext} ;;
2157 *) func_lo2o_result=${1} ;;
2161 # func_xform libobj-or-source
2164 func_xform_result=${1%.*}.lo
2167 # func_arith arithmetic-term...
2170 func_arith_result=$(( $* ))
2174 # STRING may not start with a hyphen.
2177 func_len_result=${#1}
2182 *) # Bourne compatible functions.
2183 cat << \_LT_EOF >> "$cfgfile"
2185 # func_dirname file append nondir_replacement
2186 # Compute the dirname of FILE. If nonempty, add APPEND to the result,
2187 # otherwise set result to NONDIR_REPLACEMENT.
2190 # Extract subdirectory from the argument.
2191 func_dirname_result=`$ECHO "X${1}" | $Xsed -e "$dirname"`
2192 if test "X$func_dirname_result" = "X${1}"; then
2193 func_dirname_result="${3}"
2195 func_dirname_result="$func_dirname_result${2}"
2199 # func_basename file
2202 func_basename_result=`$ECHO "X${1}" | $Xsed -e "$basename"`
2206 # func_stripname prefix suffix name
2207 # strip PREFIX and SUFFIX off of NAME.
2208 # PREFIX and SUFFIX must not contain globbing or regex special
2209 # characters, hashes, percent signs, but SUFFIX may contain a leading
2210 # dot (in which case that matches only a dot).
2211 # func_strip_suffix prefix name
2215 .*) func_stripname_result=`$ECHO "X${3}" \
2216 | $Xsed -e "s%^${1}%%" -e "s%\\\\${2}\$%%"`;;
2217 *) func_stripname_result=`$ECHO "X${3}" \
2218 | $Xsed -e "s%^${1}%%" -e "s%${2}\$%%"`;;
2223 my_sed_long_opt='1s/^\(-[^=]*\)=.*/\1/;q'
2224 my_sed_long_arg='1s/^-[^=]*=//'
2229 func_opt_split_opt=`$ECHO "X${1}" | $Xsed -e "$my_sed_long_opt"`
2230 func_opt_split_arg=`$ECHO "X${1}" | $Xsed -e "$my_sed_long_arg"`
2236 func_lo2o_result=`$ECHO "X${1}" | $Xsed -e "$lo2o"`
2239 # func_xform libobj-or-source
2242 func_xform_result=`$ECHO "X${1}" | $Xsed -e 's/\.[^.]*$/.lo/'`
2245 # func_arith arithmetic-term...
2248 func_arith_result=`expr "$@"`
2252 # STRING may not start with a hyphen.
2255 func_len_result=`expr "$1" : ".*" 2>/dev/null || echo $max_cmd_len`
2261 case $lt_shell_append in
2263 cat << \_LT_EOF >> "$cfgfile"
2265 # func_append var value
2266 # Append VALUE to the end of shell variable VAR.
2274 cat << \_LT_EOF >> "$cfgfile"
2276 # func_append var value
2277 # Append VALUE to the end of shell variable VAR.
2288 sed -n '/^# Generated shell functions inserted here/,$p' "$ltmain" >> "$cfgfile" \
2289 || (rm -f "$cfgfile"; exit 1)
2291 mv -f "$cfgfile" "$ofile" ||
2292 (rm -f "$ofile" && cp "$cfgfile" "$ofile" && rm -f "$cfgfile")
2296 cat <<_LT_EOF >> "$ofile"
2298 # ### BEGIN LIBTOOL TAG CONFIG: CXX
2300 # The linker used to build libraries.
2303 # Commands used to build an old-style archive.
2304 old_archive_cmds=$lt_old_archive_cmds_CXX
2306 # A language specific compiler.
2309 # Is the compiler the GNU compiler?
2312 # Compiler flag to turn off builtin functions.
2313 no_builtin_flag=$lt_lt_prog_compiler_no_builtin_flag_CXX
2315 # How to pass a linker flag through the compiler.
2316 wl=$lt_lt_prog_compiler_wl_CXX
2318 # Additional compiler flags for building library objects.
2319 pic_flag=$lt_lt_prog_compiler_pic_CXX
2321 # Compiler flag to prevent dynamic linking.
2322 link_static_flag=$lt_lt_prog_compiler_static_CXX
2324 # Does compiler simultaneously support -c and -o options?
2325 compiler_c_o=$lt_lt_cv_prog_compiler_c_o_CXX
2327 # Whether or not to add -lc for building shared libraries.
2328 build_libtool_need_lc=$archive_cmds_need_lc_CXX
2330 # Whether or not to disallow shared libs when runtime libs are static.
2331 allow_libtool_libs_with_static_runtimes=$enable_shared_with_static_runtimes_CXX
2333 # Compiler flag to allow reflexive dlopens.
2334 export_dynamic_flag_spec=$lt_export_dynamic_flag_spec_CXX
2336 # Compiler flag to generate shared objects directly from archives.
2337 whole_archive_flag_spec=$lt_whole_archive_flag_spec_CXX
2339 # Whether the compiler copes with passing no objects directly.
2340 compiler_needs_object=$lt_compiler_needs_object_CXX
2342 # Create an old-style archive from a shared archive.
2343 old_archive_from_new_cmds=$lt_old_archive_from_new_cmds_CXX
2345 # Create a temporary old-style archive to link instead of a shared archive.
2346 old_archive_from_expsyms_cmds=$lt_old_archive_from_expsyms_cmds_CXX
2348 # Commands used to build a shared archive.
2349 archive_cmds=$lt_archive_cmds_CXX
2350 archive_expsym_cmds=$lt_archive_expsym_cmds_CXX
2352 # Commands used to build a loadable module if different from building
2354 module_cmds=$lt_module_cmds_CXX
2355 module_expsym_cmds=$lt_module_expsym_cmds_CXX
2357 # Whether we are building with GNU ld or not.
2358 with_gnu_ld=$lt_with_gnu_ld_CXX
2360 # Flag that allows shared libraries with undefined symbols to be built.
2361 allow_undefined_flag=$lt_allow_undefined_flag_CXX
2363 # Flag that enforces no undefined symbols.
2364 no_undefined_flag=$lt_no_undefined_flag_CXX
2366 # Flag to hardcode \$libdir into a binary during linking.
2367 # This must work even if \$libdir does not exist
2368 hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec_CXX
2370 # If ld is used when linking, flag to hardcode \$libdir into a binary
2371 # during linking. This must work even if \$libdir does not exist.
2372 hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld_CXX
2374 # Whether we need a single "-rpath" flag with a separated argument.
2375 hardcode_libdir_separator=$lt_hardcode_libdir_separator_CXX
2377 # Set to "yes" if using DIR/libNAME\${shared_ext} during linking hardcodes
2378 # DIR into the resulting binary.
2379 hardcode_direct=$hardcode_direct_CXX
2381 # Set to "yes" if using DIR/libNAME\${shared_ext} during linking hardcodes
2382 # DIR into the resulting binary and the resulting library dependency is
2383 # "absolute",i.e impossible to change by setting \${shlibpath_var} if the
2384 # library is relocated.
2385 hardcode_direct_absolute=$hardcode_direct_absolute_CXX
2387 # Set to "yes" if using the -LDIR flag during linking hardcodes DIR
2388 # into the resulting binary.
2389 hardcode_minus_L=$hardcode_minus_L_CXX
2391 # Set to "yes" if using SHLIBPATH_VAR=DIR during linking hardcodes DIR
2392 # into the resulting binary.
2393 hardcode_shlibpath_var=$hardcode_shlibpath_var_CXX
2395 # Set to "yes" if building a shared library automatically hardcodes DIR
2396 # into the library and all subsequent libraries and executables linked
2398 hardcode_automatic=$hardcode_automatic_CXX
2400 # Set to yes if linker adds runtime paths of dependent libraries
2401 # to runtime path list.
2402 inherit_rpath=$inherit_rpath_CXX
2404 # Whether libtool must link a program against all its dependency libraries.
2405 link_all_deplibs=$link_all_deplibs_CXX
2407 # Fix the shell variable \$srcfile for the compiler.
2408 fix_srcfile_path=$lt_fix_srcfile_path_CXX
2410 # Set to "yes" if exported symbols are required.
2411 always_export_symbols=$always_export_symbols_CXX
2413 # The commands to list exported symbols.
2414 export_symbols_cmds=$lt_export_symbols_cmds_CXX
2416 # Symbols that should not be listed in the preloaded symbols.
2417 exclude_expsyms=$lt_exclude_expsyms_CXX
2419 # Symbols that must always be exported.
2420 include_expsyms=$lt_include_expsyms_CXX
2422 # Commands necessary for linking programs (against libraries) with templates.
2423 prelink_cmds=$lt_prelink_cmds_CXX
2425 # Specify filename containing input files.
2426 file_list_spec=$lt_file_list_spec_CXX
2428 # How to hardcode a shared library path into an executable.
2429 hardcode_action=$hardcode_action_CXX
2431 # The directories searched by this compiler when creating a shared library.
2432 compiler_lib_search_dirs=$lt_compiler_lib_search_dirs_CXX
2434 # Dependencies to place before and after the objects being linked to
2435 # create a shared library.
2436 predep_objects=$lt_predep_objects_CXX
2437 postdep_objects=$lt_postdep_objects_CXX
2438 predeps=$lt_predeps_CXX
2439 postdeps=$lt_postdeps_CXX
2441 # The library search path used internally by the compiler when linking
2443 compiler_lib_search_path=$lt_compiler_lib_search_path_CXX
2445 # ### END LIBTOOL TAG CONFIG: CXX
2454 { (exit 0); exit 0; }