1 # Makefile.in generated by automake 1.10.2 from Makefile.am.
2 # src/Makefile. Generated from Makefile.in by configure.
4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
5 # 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
6 # This Makefile.in is free software; the Free Software Foundation
7 # gives unlimited permission to copy and/or distribute it,
8 # with or without modifications, as long as this notice is preserved.
10 # This program is distributed in the hope that it will be useful,
11 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
12 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
20 pkgdatadir = $(datadir)/clustal-omega
21 pkglibdir = $(libdir)/clustal-omega
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23 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
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28 transform = $(program_transform_name)
35 build_triplet = x86_64-unknown-linux-gnu
36 host_triplet = x86_64-unknown-linux-gnu
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63 hhalign/libhhalign.la squid/libsquid.la kmpp/libkmpp.la
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114 AM_CFLAGS = -O3 -fopenmp
115 AM_CXXFLAGS = -O3 -fopenmp
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120 AUTOMAKE = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run automake-1.10
123 CCDEPMODE = depmode=gcc3
129 CXXDEPMODE = depmode=gcc3
132 DEFS = -DHAVE_CONFIG_H
143 INSTALL = /usr/bin/install -c
144 INSTALL_DATA = ${INSTALL} -m 644
145 INSTALL_PROGRAM = ${INSTALL}
146 INSTALL_SCRIPT = ${INSTALL}
147 INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
148 LD = /usr/bin/ld -m elf_x86_64
151 LIBS = -largtable2 -lm
152 LIBTOOL = $(SHELL) $(top_builddir)/libtool
156 MAKEINFO = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run makeinfo
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162 OPENMP_CFLAGS = -fopenmp
163 OPENMP_CXXFLAGS = -fopenmp
166 PACKAGE = clustal-omega
167 PACKAGE_BUGREPORT = clustalw@ucd.ie
168 PACKAGE_CODENAME = AndreaGiacomo
169 PACKAGE_NAME = Clustal Omega
170 PACKAGE_STRING = Clustal Omega 1.2.4
171 PACKAGE_TARNAME = clustal-omega
172 PACKAGE_VERSION = 1.2.4
180 abs_builddir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/src
181 abs_srcdir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/src
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203 exec_prefix = ${prefix}
204 host = x86_64-unknown-linux-gnu
208 host_vendor = unknown
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211 infodir = ${datarootdir}/info
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213 libdir = ${exec_prefix}/lib
214 libexecdir = ${exec_prefix}/libexec
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233 EXTRA_DIST = clustalo-api-test.c
234 SUBDIRS = hhalign squid kmpp clustal
236 # the following is the clustalo convenience library which wraps all
237 # the other noinst libraries
238 lib_LTLIBRARIES = libclustalo.la
239 libclustalo_la_SOURCES = clustal-omega.c
240 libclustalo_la_LIBADD = clustal/libclustal.la \
241 hhalign/libhhalign.la \
245 libclustalo_la_LDFLAGS = -static
246 library_includedir = $(includedir)/clustalo/
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324 @list='$(lib_LTLIBRARIES)'; for p in $$list; do \
325 dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \
326 test "$$dir" != "$$p" || dir=.; \
327 echo "rm -f \"$${dir}/so_locations\""; \
328 rm -f "$${dir}/so_locations"; \
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331 $(libclustalo_la_LINK) -rpath $(libdir) $(libclustalo_la_OBJECTS) $(libclustalo_la_LIBADD) $(LIBS)
332 install-binPROGRAMS: $(bin_PROGRAMS)
334 test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
335 @list='$(bin_PROGRAMS)'; for p in $$list; do \
336 p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
340 f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
341 echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \
342 $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \
346 uninstall-binPROGRAMS:
348 @list='$(bin_PROGRAMS)'; for p in $$list; do \
349 f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
350 echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
351 rm -f "$(DESTDIR)$(bindir)/$$f"; \
355 @list='$(bin_PROGRAMS)'; for p in $$list; do \
356 f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
357 echo " rm -f $$p $$f"; \
360 clustalo$(EXEEXT): $(clustalo_OBJECTS) $(clustalo_DEPENDENCIES)
361 @rm -f clustalo$(EXEEXT)
362 $(CXXLINK) $(clustalo_OBJECTS) $(clustalo_LDADD) $(LIBS)
370 include ./$(DEPDIR)/clustal-omega.Plo
371 include ./$(DEPDIR)/main.Po
372 include ./$(DEPDIR)/mymain.Po
375 $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
376 mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
377 # source='$<' object='$@' libtool=no \
378 # DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
382 $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
383 mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
384 # source='$<' object='$@' libtool=no \
385 # DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
386 # $(COMPILE) -c `$(CYGPATH_W) '$<'`
389 $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
390 mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
391 # source='$<' object='$@' libtool=yes \
392 # DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
393 # $(LTCOMPILE) -c -o $@ $<
396 $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
397 mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
398 # source='$<' object='$@' libtool=no \
399 # DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) \
400 # $(CXXCOMPILE) -c -o $@ $<
403 $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
404 mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
405 # source='$<' object='$@' libtool=no \
406 # DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) \
407 # $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
410 $(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
411 mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
412 # source='$<' object='$@' libtool=yes \
413 # DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) \
414 # $(LTCXXCOMPILE) -c -o $@ $<
421 install-library_includeHEADERS: $(library_include_HEADERS)
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427 echo " $(library_includeHEADERS_INSTALL) '$$d$$p' '$(DESTDIR)$(library_includedir)/$$f'"; \
428 $(library_includeHEADERS_INSTALL) "$$d$$p" "$(DESTDIR)$(library_includedir)/$$f"; \
431 uninstall-library_includeHEADERS:
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439 # This directory's subdirectories are mostly independent; you can cd
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441 # To change the values of `make' variables: instead of editing Makefiles,
442 # (1) if the variable is set in `config.status', edit `config.status'
443 # (which will cause the Makefiles to be regenerated when you run `make');
444 # (2) otherwise, pass the desired values on the `make' command line.
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633 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
634 `test -z '$(STRIP)' || \
635 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
641 -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
643 maintainer-clean-generic:
644 @echo "This command is intended for maintainers to use"
645 @echo "it deletes files that may require special tools to rebuild."
646 clean: clean-recursive
648 clean-am: clean-binPROGRAMS clean-generic clean-libLTLIBRARIES \
649 clean-libtool mostlyclean-am
651 distclean: distclean-recursive
654 distclean-am: clean-am distclean-compile distclean-generic \
655 distclean-hdr distclean-tags
667 install-data-am: install-library_includeHEADERS
669 install-dvi: install-dvi-recursive
671 install-exec-am: install-binPROGRAMS install-libLTLIBRARIES
673 install-html: install-html-recursive
675 install-info: install-info-recursive
679 install-pdf: install-pdf-recursive
681 install-ps: install-ps-recursive
685 maintainer-clean: maintainer-clean-recursive
688 maintainer-clean-am: distclean-am maintainer-clean-generic
690 mostlyclean: mostlyclean-recursive
692 mostlyclean-am: mostlyclean-compile mostlyclean-generic \
703 uninstall-am: uninstall-binPROGRAMS uninstall-libLTLIBRARIES \
704 uninstall-library_includeHEADERS
706 .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
709 .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
710 all all-am check check-am clean clean-binPROGRAMS \
711 clean-generic clean-libLTLIBRARIES clean-libtool ctags \
712 ctags-recursive distclean distclean-compile distclean-generic \
713 distclean-hdr distclean-libtool distclean-tags distdir dvi \
714 dvi-am html html-am info info-am install install-am \
715 install-binPROGRAMS install-data install-data-am install-dvi \
716 install-dvi-am install-exec install-exec-am install-html \
717 install-html-am install-info install-info-am \
718 install-libLTLIBRARIES install-library_includeHEADERS \
719 install-man install-pdf install-pdf-am install-ps \
720 install-ps-am install-strip installcheck installcheck-am \
721 installdirs installdirs-am maintainer-clean \
722 maintainer-clean-generic mostlyclean mostlyclean-compile \
723 mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
724 tags tags-recursive uninstall uninstall-am \
725 uninstall-binPROGRAMS uninstall-libLTLIBRARIES \
726 uninstall-library_includeHEADERS
728 # Tell versions [3.59,3.63) of GNU make to not export all variables.
729 # Otherwise a system limit (for SysV at least) may be exceeded.