1 pair_dist.lo: pair_dist.c ../../src/config.h /usr/include/stdlib.h \
2 /usr/include/features.h /usr/include/sys/cdefs.h \
3 /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
4 /usr/include/gnu/stubs-64.h \
5 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
6 /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
7 /usr/include/endian.h /usr/include/bits/endian.h \
8 /usr/include/bits/byteswap.h /usr/include/xlocale.h \
9 /usr/include/sys/types.h /usr/include/bits/types.h \
10 /usr/include/bits/typesizes.h /usr/include/time.h \
11 /usr/include/sys/select.h /usr/include/bits/select.h \
12 /usr/include/bits/sigset.h /usr/include/bits/time.h \
13 /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
14 /usr/include/alloca.h /usr/include/ctype.h /usr/include/assert.h \
15 ../../src/clustal-omega.h \
16 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h \
17 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdbool.h \
18 ../../src/clustal-omega-config.h ../../src/hhalign/general.h \
19 ../../src/hhalign/../clustal/log.h /usr/include/stdio.h \
20 /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
21 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
22 /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
23 /usr/include/bits/stdio.h ../../src/hhalign/hhfunc.h \
24 ../../src/clustal/log.h ../../src/clustal/util.h \
25 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
26 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
27 /usr/include/limits.h /usr/include/bits/posix1_lim.h \
28 /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
29 /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
30 /usr/include/string.h /usr/include/bits/string.h \
31 /usr/include/bits/string2.h /usr/include/strings.h \
32 ../../src/clustal/symmatrix.h ../../src/clustal/seq.h \
33 ../../src/squid/squid.h /usr/include/math.h /usr/include/bits/huge_val.h \
34 /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
35 /usr/include/bits/inf.h /usr/include/bits/nan.h \
36 /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
37 /usr/include/bits/mathinline.h /usr/include/unistd.h \
38 /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
39 /usr/include/bits/confname.h /usr/include/getopt.h ../../src/squid/msa.h \
40 ../../src/squid/gki.h ../../src/squid/ssi.h ../../src/squid/squid.h \
41 ../../src/squid/sqfuncs.h ../../src/squid/sre_random.h \
42 ../../src/squid/vectorops.h ../../src/clustal/util.h \
43 ../../src/clustal/tree.h ../../src/clustal/symmatrix.h \
44 ../../src/clustal/muscle_tree.h ../../src/clustal/seq.h \
45 ../../src/clustal/mbed.h ../../src/clustal/weights.h \
46 ../../src/clustal/pair_dist.h ../../src/clustal/hhalign_wrapper.h \
47 ktuple_pair.h seq.h symmatrix.h progress.h ../../src/squid/stopwatch.h \
48 /usr/include/sys/times.h pair_dist.h util.h
52 /usr/include/stdlib.h:
54 /usr/include/features.h:
56 /usr/include/sys/cdefs.h:
58 /usr/include/bits/wordsize.h:
60 /usr/include/gnu/stubs.h:
62 /usr/include/gnu/stubs-64.h:
64 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h:
66 /usr/include/bits/waitflags.h:
68 /usr/include/bits/waitstatus.h:
70 /usr/include/endian.h:
72 /usr/include/bits/endian.h:
74 /usr/include/bits/byteswap.h:
76 /usr/include/xlocale.h:
78 /usr/include/sys/types.h:
80 /usr/include/bits/types.h:
82 /usr/include/bits/typesizes.h:
86 /usr/include/sys/select.h:
88 /usr/include/bits/select.h:
90 /usr/include/bits/sigset.h:
92 /usr/include/bits/time.h:
94 /usr/include/sys/sysmacros.h:
96 /usr/include/bits/pthreadtypes.h:
98 /usr/include/alloca.h:
100 /usr/include/ctype.h:
102 /usr/include/assert.h:
104 ../../src/clustal-omega.h:
106 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:
108 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdbool.h:
110 ../../src/clustal-omega-config.h:
112 ../../src/hhalign/general.h:
114 ../../src/hhalign/../clustal/log.h:
116 /usr/include/stdio.h:
118 /usr/include/libio.h:
120 /usr/include/_G_config.h:
122 /usr/include/wchar.h:
124 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h:
126 /usr/include/bits/stdio_lim.h:
128 /usr/include/bits/sys_errlist.h:
130 /usr/include/bits/stdio.h:
132 ../../src/hhalign/hhfunc.h:
134 ../../src/clustal/log.h:
136 ../../src/clustal/util.h:
138 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h:
140 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h:
142 /usr/include/limits.h:
144 /usr/include/bits/posix1_lim.h:
146 /usr/include/bits/local_lim.h:
148 /usr/include/linux/limits.h:
150 /usr/include/bits/posix2_lim.h:
152 /usr/include/bits/xopen_lim.h:
154 /usr/include/string.h:
156 /usr/include/bits/string.h:
158 /usr/include/bits/string2.h:
160 /usr/include/strings.h:
162 ../../src/clustal/symmatrix.h:
164 ../../src/clustal/seq.h:
166 ../../src/squid/squid.h:
170 /usr/include/bits/huge_val.h:
172 /usr/include/bits/huge_valf.h:
174 /usr/include/bits/huge_vall.h:
176 /usr/include/bits/inf.h:
178 /usr/include/bits/nan.h:
180 /usr/include/bits/mathdef.h:
182 /usr/include/bits/mathcalls.h:
184 /usr/include/bits/mathinline.h:
186 /usr/include/unistd.h:
188 /usr/include/bits/posix_opt.h:
190 /usr/include/bits/environments.h:
192 /usr/include/bits/confname.h:
194 /usr/include/getopt.h:
196 ../../src/squid/msa.h:
198 ../../src/squid/gki.h:
200 ../../src/squid/ssi.h:
202 ../../src/squid/squid.h:
204 ../../src/squid/sqfuncs.h:
206 ../../src/squid/sre_random.h:
208 ../../src/squid/vectorops.h:
210 ../../src/clustal/util.h:
212 ../../src/clustal/tree.h:
214 ../../src/clustal/symmatrix.h:
216 ../../src/clustal/muscle_tree.h:
218 ../../src/clustal/seq.h:
220 ../../src/clustal/mbed.h:
222 ../../src/clustal/weights.h:
224 ../../src/clustal/pair_dist.h:
226 ../../src/clustal/hhalign_wrapper.h:
236 ../../src/squid/stopwatch.h:
238 /usr/include/sys/times.h: