1 # Makefile.in generated by automake 1.10.2 from Makefile.am.
2 # src/squid/Makefile. Generated from Makefile.in by configure.
4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
5 # 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
6 # This Makefile.in is free software; the Free Software Foundation
7 # gives unlimited permission to copy and/or distribute it,
8 # with or without modifications, as long as this notice is preserved.
10 # This program is distributed in the hope that it will be useful,
11 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
12 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
17 # Replaces squids own automake files
19 # Some useful automake documentation:
20 # http://www.openismus.com/documents/linux/automake/automake.shtml
21 # http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html
25 pkgdatadir = $(datadir)/clustal-omega
26 pkglibdir = $(libdir)/clustal-omega
27 pkgincludedir = $(includedir)/clustal-omega
28 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
29 install_sh_DATA = $(install_sh) -c -m 644
30 install_sh_PROGRAM = $(install_sh) -c
31 install_sh_SCRIPT = $(install_sh) -c
32 INSTALL_HEADER = $(INSTALL_DATA)
33 transform = $(program_transform_name)
40 build_triplet = x86_64-unknown-linux-gnu
41 host_triplet = x86_64-unknown-linux-gnu
43 DIST_COMMON = $(library_include_HEADERS) $(srcdir)/Makefile.am \
45 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
46 am__aclocal_m4_deps = $(top_srcdir)/m4/ax_prefix_config_h.m4 \
47 $(top_srcdir)/m4/libtool.m4 $(top_srcdir)/m4/ltoptions.m4 \
48 $(top_srcdir)/m4/ltsugar.m4 $(top_srcdir)/m4/ltversion.m4 \
49 $(top_srcdir)/m4/lt~obsolete.m4 $(top_srcdir)/m4/ax_openmp.m4 \
50 $(top_srcdir)/configure.ac
51 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
53 mkinstalldirs = $(install_sh) -d
54 CONFIG_HEADER = $(top_builddir)/src/config.h
56 LTLIBRARIES = $(noinst_LTLIBRARIES)
58 am_libsquid_la_OBJECTS = a2m.lo aligneval.lo alignio.lo clustal.lo \
59 cluster.lo dayhoff.lo eps.lo file.lo getopt.lo gki.lo gsi.lo \
60 gsi64.lo hsregex.lo iupac.lo msa.lo msf.lo phylip.lo \
61 revcomp.lo rk.lo selex.lo seqencode.lo shuffle.lo sqerror.lo \
62 sqio.lo squidcore.lo sre_ctype.lo sre_math.lo sre_random.lo \
63 sre_string.lo ssi.lo stack.lo stockholm.lo stopwatch.lo \
64 translate.lo types.lo vectorops.lo weight.lo
65 libsquid_la_OBJECTS = $(am_libsquid_la_OBJECTS)
66 DEFAULT_INCLUDES = -I. -I$(top_builddir)/src
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70 $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
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72 --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
73 $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
75 LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
76 --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
78 SOURCES = $(libsquid_la_SOURCES)
79 DIST_SOURCES = $(libsquid_la_SOURCES)
80 am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
81 am__vpath_adj = case $$p in \
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85 am__strip_dir = `echo $$p | sed -e 's|^.*/||'`;
86 am__installdirs = "$(DESTDIR)$(library_includedir)"
87 library_includeHEADERS_INSTALL = $(INSTALL_HEADER)
88 HEADERS = $(library_include_HEADERS)
91 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
92 ACLOCAL = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run aclocal-1.10
93 AMTAR = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run tar
96 # need DCLUSTALO here to enable Clustal specific squid patches
97 # CLUSTALO is also defined in ../config.h which is included by squid.h
98 # but some files do not include squid.h
99 # not using -DSRE_STRICT_ANSI allows to use gzipped files as input and lists user *and* system time during timings
100 # not sure if there are any downsides
101 # AM_CFLAGS = -DCLUSTALO -DSRE_STRICT_ANSI -O3
102 AM_CFLAGS = -DCLUSTALO -O3
106 AUTOCONF = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run autoconf
107 AUTOHEADER = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run autoheader
108 AUTOMAKE = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run automake-1.10
111 CCDEPMODE = depmode=gcc3
117 CXXDEPMODE = depmode=gcc3
120 DEFS = -DHAVE_CONFIG_H
131 INSTALL = /usr/bin/install -c
132 INSTALL_DATA = ${INSTALL} -m 644
133 INSTALL_PROGRAM = ${INSTALL}
134 INSTALL_SCRIPT = ${INSTALL}
135 INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
136 LD = /usr/bin/ld -m elf_x86_64
139 LIBS = -largtable2 -lm
140 LIBTOOL = $(SHELL) $(top_builddir)/libtool
144 MAKEINFO = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/missing --run makeinfo
145 MKDIR_P = /bin/mkdir -p
150 OPENMP_CFLAGS = -fopenmp
151 OPENMP_CXXFLAGS = -fopenmp
154 PACKAGE = clustal-omega
155 PACKAGE_BUGREPORT = clustalw@ucd.ie
156 PACKAGE_CODENAME = AndreaGiacomo
157 PACKAGE_NAME = Clustal Omega
158 PACKAGE_STRING = Clustal Omega 1.2.4
159 PACKAGE_TARNAME = clustal-omega
160 PACKAGE_VERSION = 1.2.4
168 abs_builddir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/src/squid
169 abs_srcdir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/src/squid
170 abs_top_builddir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo
171 abs_top_srcdir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo
175 am__include = include
178 am__tar = ${AMTAR} chof - "$$tardir"
179 am__untar = ${AMTAR} xf -
180 bindir = ${exec_prefix}/bin
181 build = x86_64-unknown-linux-gnu
185 build_vendor = unknown
187 datadir = ${datarootdir}
188 datarootdir = ${prefix}/share
189 docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
191 exec_prefix = ${prefix}
192 host = x86_64-unknown-linux-gnu
196 host_vendor = unknown
198 includedir = ${prefix}/include
199 infodir = ${datarootdir}/info
200 install_sh = $(SHELL) /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/clustalo/install-sh
201 libdir = ${exec_prefix}/lib
202 libexecdir = ${exec_prefix}/libexec
203 localedir = ${datarootdir}/locale
204 localstatedir = ${prefix}/var
206 mandir = ${datarootdir}/man
207 mkdir_p = /bin/mkdir -p
208 oldincludedir = /usr/include
211 program_transform_name = s,x,x,
213 sbindir = ${exec_prefix}/sbin
214 sharedstatedir = ${prefix}/com
216 sysconfdir = ${prefix}/etc
218 top_build_prefix = ../../
223 EXTRA_DIST = COPYRIGHT LICENSE 00README clustalo.README squid-1.9g.tar.gz
224 noinst_LTLIBRARIES = libsquid.la
225 libsquid_la_SOURCES = a2m.c aligneval.c alignio.c \
226 clustal.c cluster.c \
230 getopt.c gki.c gki.h gsi.c gsi.h gsi64.c gsi64.h \
235 revcomp.c rk.c rk.h \
236 selex.c seqencode.c shuffle.c sqerror.c sqfuncs.h sqio.c squid.h squidcore.c \
237 sre_ctype.c sre_math.c sre_random.c sre_random.h sre_string.c \
238 ssi.c ssi.h stack.c stockholm.c stockholm.h stopwatch.c stopwatch.h \
239 translate.c types.c vectorops.c \
240 vectorops.h version.h \
243 library_includedir = $(includedir)/clustalo/squid
244 library_include_HEADERS = gki.h gsi64.h msa.h rk.h \
245 squid.h stopwatch.h sqfuncs.h \
246 sre_random.h ssi.h stockholm.h \
247 vectorops.h version.h
252 .SUFFIXES: .c .lo .o .obj
253 $(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
255 case '$(am__configure_deps)' in \
257 ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
258 && { if test -f $@; then exit 0; else break; fi; }; \
262 echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/squid/Makefile'; \
263 cd $(top_srcdir) && \
264 $(AUTOMAKE) --gnu src/squid/Makefile
266 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
269 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
271 echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
272 cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
275 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
276 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
278 $(top_srcdir)/configure: $(am__configure_deps)
279 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
280 $(ACLOCAL_M4): $(am__aclocal_m4_deps)
281 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
283 clean-noinstLTLIBRARIES:
284 -test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES)
285 @list='$(noinst_LTLIBRARIES)'; for p in $$list; do \
286 dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \
287 test "$$dir" != "$$p" || dir=.; \
288 echo "rm -f \"$${dir}/so_locations\""; \
289 rm -f "$${dir}/so_locations"; \
291 libsquid.la: $(libsquid_la_OBJECTS) $(libsquid_la_DEPENDENCIES)
292 $(LINK) $(libsquid_la_OBJECTS) $(libsquid_la_LIBADD) $(LIBS)
300 include ./$(DEPDIR)/a2m.Plo
301 include ./$(DEPDIR)/aligneval.Plo
302 include ./$(DEPDIR)/alignio.Plo
303 include ./$(DEPDIR)/clustal.Plo
304 include ./$(DEPDIR)/cluster.Plo
305 include ./$(DEPDIR)/dayhoff.Plo
306 include ./$(DEPDIR)/eps.Plo
307 include ./$(DEPDIR)/file.Plo
308 include ./$(DEPDIR)/getopt.Plo
309 include ./$(DEPDIR)/gki.Plo
310 include ./$(DEPDIR)/gsi.Plo
311 include ./$(DEPDIR)/gsi64.Plo
312 include ./$(DEPDIR)/hsregex.Plo
313 include ./$(DEPDIR)/iupac.Plo
314 include ./$(DEPDIR)/msa.Plo
315 include ./$(DEPDIR)/msf.Plo
316 include ./$(DEPDIR)/phylip.Plo
317 include ./$(DEPDIR)/revcomp.Plo
318 include ./$(DEPDIR)/rk.Plo
319 include ./$(DEPDIR)/selex.Plo
320 include ./$(DEPDIR)/seqencode.Plo
321 include ./$(DEPDIR)/shuffle.Plo
322 include ./$(DEPDIR)/sqerror.Plo
323 include ./$(DEPDIR)/sqio.Plo
324 include ./$(DEPDIR)/squidcore.Plo
325 include ./$(DEPDIR)/sre_ctype.Plo
326 include ./$(DEPDIR)/sre_math.Plo
327 include ./$(DEPDIR)/sre_random.Plo
328 include ./$(DEPDIR)/sre_string.Plo
329 include ./$(DEPDIR)/ssi.Plo
330 include ./$(DEPDIR)/stack.Plo
331 include ./$(DEPDIR)/stockholm.Plo
332 include ./$(DEPDIR)/stopwatch.Plo
333 include ./$(DEPDIR)/translate.Plo
334 include ./$(DEPDIR)/types.Plo
335 include ./$(DEPDIR)/vectorops.Plo
336 include ./$(DEPDIR)/weight.Plo
339 $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
340 mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
341 # source='$<' object='$@' libtool=no \
342 # DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
346 $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
347 mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
348 # source='$<' object='$@' libtool=no \
349 # DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
350 # $(COMPILE) -c `$(CYGPATH_W) '$<'`
353 $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
354 mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
355 # source='$<' object='$@' libtool=yes \
356 # DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
357 # $(LTCOMPILE) -c -o $@ $<
364 install-library_includeHEADERS: $(library_include_HEADERS)
366 test -z "$(library_includedir)" || $(MKDIR_P) "$(DESTDIR)$(library_includedir)"
367 @list='$(library_include_HEADERS)'; for p in $$list; do \
368 if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
370 echo " $(library_includeHEADERS_INSTALL) '$$d$$p' '$(DESTDIR)$(library_includedir)/$$f'"; \
371 $(library_includeHEADERS_INSTALL) "$$d$$p" "$(DESTDIR)$(library_includedir)/$$f"; \
374 uninstall-library_includeHEADERS:
376 @list='$(library_include_HEADERS)'; for p in $$list; do \
378 echo " rm -f '$(DESTDIR)$(library_includedir)/$$f'"; \
379 rm -f "$(DESTDIR)$(library_includedir)/$$f"; \
382 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
383 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
384 unique=`for i in $$list; do \
385 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
387 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
388 END { if (nonempty) { for (i in files) print i; }; }'`; \
392 TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
393 $(TAGS_FILES) $(LISP)
396 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
397 unique=`for i in $$list; do \
398 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
400 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
401 END { if (nonempty) { for (i in files) print i; }; }'`; \
402 if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
403 test -n "$$unique" || unique=$$empty_fix; \
404 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
408 CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
409 $(TAGS_FILES) $(LISP)
411 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
412 unique=`for i in $$list; do \
413 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
415 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
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417 test -z "$(CTAGS_ARGS)$$tags$$unique" \
418 || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
422 here=`$(am__cd) $(top_builddir) && pwd` \
423 && cd $(top_srcdir) \
424 && gtags -i $(GTAGS_ARGS) $$here
427 -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
429 distdir: $(DISTFILES)
430 @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
431 topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
432 list='$(DISTFILES)'; \
433 dist_files=`for file in $$list; do echo $$file; done | \
434 sed -e "s|^$$srcdirstrip/||;t" \
435 -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
436 case $$dist_files in \
437 */*) $(MKDIR_P) `echo "$$dist_files" | \
438 sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
441 for file in $$dist_files; do \
442 if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
443 if test -d $$d/$$file; then \
444 dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
445 if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
446 cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
448 cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
450 test -f $(distdir)/$$file \
451 || cp -p $$d/$$file $(distdir)/$$file \
457 all-am: Makefile $(LTLIBRARIES) $(HEADERS)
459 for dir in "$(DESTDIR)$(library_includedir)"; do \
460 test -z "$$dir" || $(MKDIR_P) "$$dir"; \
463 install-exec: install-exec-am
464 install-data: install-data-am
465 uninstall: uninstall-am
468 @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
470 installcheck: installcheck-am
472 $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
473 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
474 `test -z '$(STRIP)' || \
475 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
481 -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
483 maintainer-clean-generic:
484 @echo "This command is intended for maintainers to use"
485 @echo "it deletes files that may require special tools to rebuild."
488 clean-am: clean-generic clean-libtool clean-noinstLTLIBRARIES \
491 distclean: distclean-am
494 distclean-am: clean-am distclean-compile distclean-generic \
507 install-data-am: install-library_includeHEADERS
509 install-dvi: install-dvi-am
513 install-html: install-html-am
515 install-info: install-info-am
519 install-pdf: install-pdf-am
521 install-ps: install-ps-am
525 maintainer-clean: maintainer-clean-am
528 maintainer-clean-am: distclean-am maintainer-clean-generic
530 mostlyclean: mostlyclean-am
532 mostlyclean-am: mostlyclean-compile mostlyclean-generic \
543 uninstall-am: uninstall-library_includeHEADERS
545 .MAKE: install-am install-strip
547 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \
548 clean-libtool clean-noinstLTLIBRARIES ctags distclean \
549 distclean-compile distclean-generic distclean-libtool \
550 distclean-tags distdir dvi dvi-am html html-am info info-am \
551 install install-am install-data install-data-am install-dvi \
552 install-dvi-am install-exec install-exec-am install-html \
553 install-html-am install-info install-info-am \
554 install-library_includeHEADERS install-man install-pdf \
555 install-pdf-am install-ps install-ps-am install-strip \
556 installcheck installcheck-am installdirs maintainer-clean \
557 maintainer-clean-generic mostlyclean mostlyclean-compile \
558 mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
559 tags uninstall uninstall-am uninstall-library_includeHEADERS
561 # Tell versions [3.59,3.63) of GNU make to not export all variables.
562 # Otherwise a system limit (for SysV at least) may be exceeded.