binaries/src/compilebin.sh

   1 #!/bin/bash
   2
   3 echo ""
   4 echo "Compiling Clustalw..."
   5 cd clustalw
   6 chmod +x ./configure
   7 ./configure
   8 make clean
   9 make
  10 chmod +x src/clustalw2
  11 cd ..
  12
  13 echo "Compiling Clustal Omega..."
  14 cd clustalo
  15 make clean
  16 chmod +x ./configure
  17 ./configure
  18 make
  19 cd ..
  20
  21 echo "Compiling Mafft..."
  22 cd mafft/core
  23 make clean
  24 make
  25 cd ../..
  26
  27 echo "Compiling Mafft dependency fasta34..."
  28 cd fasta34
  29 rm *.o
  30 make
  31 chmod +x fasta34
  32 cd ..
  33
  34
  35 echo "Compiling Muscle..."
  36 cd muscle
  37 rm -f *.o muscle
  38 make
  39 cd ..
  40
  41 echo "Compiling Probcons..."
  42 cd probcons
  43 make clean
  44 make
  45 chmod +x probcons
  46 cd ..
  47
  48 echo "Compiling T-Coffee..."
  49 cd tcoffee
  50 chmod +x install
  51 ./install clean
  52 ./install t_coffee -force
  53 chmod +x t_coffee_source/t_coffee
  54 cd ..
  55
  56 echo "Compiling DisEMBL..."
  57 cd disembl
  58 gcc -O3 disembl.c -o disembl
  59 echo "DONE"
  60 chmod +x disembl DisEMBL.py
  61
  62 echo "Compiling DisEMBL dependancy Tisean... "
  63 cd Tisean_3.0.1
  64 chmod +x ./configure
  65 ./configure
  66 make
  67 cp source_c/sav_gol ../
  68 cd ..
  69 echo "DONE"
  70 chmod +x sav_gol
  71 cd ..
  72
  73 echo "Setting up GlobPlot ..."
  74 cp disembl/sav_gol globplot/sav_gol
  75 cd globplot
  76 chmod +x GlobPlot.py
  77 echo "DONE"
  78 cd ..
  79
  80 echo "Compiling IUPred..."
  81 cd iupred
  82 make clean
  83 make
  84 echo "DONE"
  85 cd ..
  86
  87 echo "Compiling Vienna ..."
  88 cd ViennaRNA
  89 chmod +x ./configure
  90 ./configure
  91 make clean
  92 make
  93 echo "DONE"
  94 cd ..
  95
  96 echo "Compiling GLProbs ..."
  97 cd GLProbs-1.0
  98 make clean
  99 make
 100 echo "DONE"
 101 cd ..
 102
 103
 104 echo "Compiling MSAProbs-0.9.7 ..."
 105 cd MSAProbs-0.9.7/MSAProbs
 106 make clean
 107 make
 108 echo "DONE"
 109 cd ../..
 110