binaries/src/compilebin.sh

   1 #!/bin/bash
   2
   3 echo ""
   4 echo "Compiling Clustalw..."
   5 cd clustalw
   6 chmod +x ./configure
   7 ./configure
   8 make clean
   9 make
  10 chmod +x src/clustalw2
  11 cd ..
  12
  13 echo "Compiling Clustal Omega..."
  14 cd clustalo
  15 chmod +x ./configure
  16 ./configure
  17 make clean
  18 make
  19 chmod +x src/clustalo
  20 cd ..
  21
  22 echo "Compiling Mafft..."
  23 cd mafft/core
  24 make clean
  25 make
  26 cd ../..
  27
  28 echo "Compiling Mafft dependency fasta34..."
  29 cd fasta34
  30 rm *.o
  31 make
  32 chmod +x fasta34
  33 cd ..
  34
  35
  36 echo "Compiling Muscle..."
  37 cd muscle
  38 rm -f *.o muscle
  39 make
  40 cd ..
  41
  42 echo "Compiling Probcons..."
  43 cd probcons
  44 make clean
  45 make
  46 chmod +x probcons
  47 cd ..
  48
  49 echo "Compiling T-Coffee..."
  50 cd tcoffee
  51 chmod +x install
  52 ./install clean
  53 ./install t_coffee -force
  54 chmod +x t_coffee_source/t_coffee
  55 cd ..
  56
  57 echo "Compiling DisEMBL..."
  58 cd disembl
  59 gcc -O3 disembl.c -o disembl
  60 echo "DONE"
  61 chmod +x disembl DisEMBL.py
  62
  63 echo "Compiling DisEMBL dependancy Tisean... "
  64 cd Tisean_3.0.1
  65 chmod +x ./configure
  66 ./configure
  67 make
  68 cp source_c/sav_gol ../
  69 cd ..
  70 echo "DONE"
  71 chmod +x sav_gol
  72 cd ..
  73
  74 echo "Setting up GlobPlot ..."
  75 cp disembl/sav_gol globplot/sav_gol
  76 cd globplot
  77 chmod +x GlobPlot.py
  78 echo "DONE"
  79 cd ..
  80
  81 echo "Compiling IUPred..."
  82 cd iupred
  83 make clean
  84 make
  85 echo "DONE"
  86 cd ..
  87
  88 echo "Compiling Vienna ..."
  89 cd ViennaRNA
  90 chmod +x ./configure
  91 ./configure
  92 make clean
  93 make
  94 echo "DONE"
  95 cd ..
  96
  97 echo "Compiling GLProbs ..."
  98 cd GLProbs-1.0
  99 make clean
 100 make
 101 echo "DONE"
 102 cd ..
 103
 104
 105 echo "Compiling MSAProbs-0.9.7 ..."
 106 cd MSAProbs-0.9.7/MSAProbs
 107 make clean
 108 make
 109 echo "DONE"
 110 cd ../..
 111