conf/settings/MuscleLimits.xml

   1 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
   2 <limits>\r
   3     <runnerClassName>compbio.runner.msa.Muscle</runnerClassName>\r
   4 \r
   5     <limit isDefault="true">\r
   6         <seqNumber>1000</seqNumber>\r
   7         <seqLength>1000</seqLength>\r
   8     </limit>\r
   9 \r
  10     <limit isDefault="false">\r
  11         <preset># LocalEngineExecutionLimit #</preset>\r
  12         <seqNumber>20</seqNumber>\r
  13         <seqLength>500</seqLength>\r
  14     </limit>\r
  15 \r
  16     <!-- Separate limits for presets -->\r
  17     <limit isDefault="false">\r
  18         <preset>Protein alignment(Fastest speed)</preset>\r
  19         <seqNumber>2000</seqNumber>\r
  20         <seqLength>1000</seqLength>\r
  21     </limit>\r
  22 \r
  23     <limit isDefault="false">\r
  24         <preset>Nucleotide alignment(Fastest speed)</preset>\r
  25         <seqNumber>1000</seqNumber>\r
  26         <seqLength>3000</seqLength>\r
  27     </limit>\r
  28 \r
  29     <limit isDefault="false">\r
  30         <preset>Huge alignments (speed-oriented)</preset>\r
  31         <seqNumber>2000</seqNumber>\r
  32         <seqLength>3000</seqLength>\r
  33     </limit>\r
  34 </limits>\r