conf/settings/MuscleLimits.xml

   1 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
   2 <limits>\r
   3  <runnerClassName>compbio.runner.muscle.Muscle</runnerClassName>\r
   4         <limit isDefault="true">\r
   5                 <seqNumber>1000</seqNumber>\r
   6                 <seqLength>1000</seqLength>\r
   7         </limit>\r
   8         <limit isDefault="false">\r
   9                 <preset># LocalEngineExecutionLimit #</preset>\r
  10                 <seqNumber>20</seqNumber>\r
  11                 <seqLength>500</seqLength>\r
  12         </limit>\r
  13         \r
  14         <!-- Separate limits for presets        -->\r
  15         <limit isDefault="false">\r
  16                 <preset>Protein alignment(Fastest speed)</preset>\r
  17                 <seqNumber>2000</seqNumber>\r
  18                 <seqLength>1000</seqLength>\r
  19         </limit>\r
  20         <limit isDefault="false">\r
  21                 <preset>Nucleotide alignment(Fastest speed)</preset>\r
  22                 <seqNumber>1000</seqNumber>\r
  23                 <seqLength>3000</seqLength>\r
  24         </limit>\r
  25         <limit isDefault="false">\r
  26                 <preset>Huge alignments (speed-oriented)</preset>\r
  27                 <seqNumber>2000</seqNumber>\r
  28                 <seqLength>3000</seqLength>\r
  29         </limit>\r
  30          \r
  31 </limits>\r