src/jalview/datamodel/annotations/AlphaFoldAnnotationRowBuilder.java

   1 package jalview.datamodel.annotations;
   2
   3 import jalview.datamodel.Annotation;
   4 import jalview.structure.StructureImportSettings;
   5 import jalview.structure.StructureImportSettings.TFType;
   6
   7 public class AlphaFoldAnnotationRowBuilder extends AnnotationRowBuilder
   8 {
   9   public static final String LABEL = "Alphafold Reliability";
  10
  11   public AlphaFoldAnnotationRowBuilder()
  12   {
  13     super(LABEL);
  14     min = 0;
  15     max = 100;
  16     hasMinMax = true;
  17     this.setTFType(StructureImportSettings.TFType.PLDDT);
  18   }
  19
  20   @Override
  21   public void processAnnotation(Annotation annotation)
  22   {
  23     if (annotation.value > 90)
  24     {
  25       // Very High
  26       annotation.colour = new java.awt.Color(0, 83, 214);
  27     }
  28     if (annotation.value <= 90)
  29     {
  30       // High
  31       annotation.colour = new java.awt.Color(101, 203, 243);
  32     }
  33     if (annotation.value <= 70)
  34     {
  35       // Confident
  36       annotation.colour = new java.awt.Color(255, 219, 19);
  37     }
  38     if (annotation.value < 50)
  39     {
  40       annotation.colour = new java.awt.Color(255, 125, 69);
  41     }
  42   }
  43 }