testsrc/testdata/TO1381.aln

   1 CLUSTAL 2.0.12 multiple sequence alignment\r
   2 \r
   3 \r
   4 Foobar_dundeefriends      MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV\r
   5 Foobar                    -----------------------------------MGDTTAGEMAVQRGLALH-------\r
   6 dundeefriends             -MTADGPRELLQLRAAVRHRPQDVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV\r
   7                                                              ******************       \r
   8 \r
   9 Foobar_dundeefriends      ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL\r
  10 Foobar                    ---------QQRHAEAAVLLQQASDAAPEHPGIALWL-HALEDAGQAEAAAA-YTRAHQL\r
  11 dundeefriends             ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED--------------HQL\r
  12                                    **************************** *****              ***\r
  13 \r
  14 Foobar_dundeefriends      LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC\r
  15 Foobar                    LPEEPYITAQLLN--------------------AVAQGVGAVEPFAFLSEDASAAE----\r
  16 dundeefriends             LPEEPYITAQLDVLSAQVR-------------AAVAQGVGAVEPFAFLSEDASAAEQLAC\r
  17                           ***********                      ***********************    \r
  18 \r
  19 Foobar_dundeefriends      ARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM\r
  20 Foobar                    ----------SVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM\r
  21 dundeefriends             ARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM\r
  22                                     **************************************************\r
  23 \r
  24 Foobar_dundeefriends      HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
  25 Foobar                    HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
  26 dundeefriends             HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
  27                           ************************************************************\r
  28 \r
  29 Foobar_dundeefriends      FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR\r
  30 Foobar                    FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR\r
  31 dundeefriends             FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR\r
  32                           ************************************************************\r
  33 \r
  34 Foobar_dundeefriends      VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA\r
  35 Foobar                    VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA\r
  36 dundeefriends             VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA\r
  37                           ************************************************************\r
  38 \r
  39 Foobar_dundeefriends      RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL\r
  40 Foobar                    RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL\r
  41 dundeefriends             RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL\r
  42                           ************************************************************\r
  43 \r
  44 Foobar_dundeefriends      TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRES\r
  45 Foobar                    TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRES\r
  46 dundeefriends             TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRES\r
  47                           ************************************************************\r
  48 \r
  49 Foobar_dundeefriends      GVFEMDGFADDFGALLQALARRHGWLGI\r
  50 Foobar                    GVFEMDGFADDFGALLQALARRHGWLGI\r
  51 dundeefriends             I---------------------------\r
  52                                                       \r