webservices/compbio/ws/client/ServicesUtil.java

   1 package compbio.ws.client;\r
   2 \r
   3 import java.io.File;\r
   4 \r
   5 import compbio.engine.client.ConfExecutable;\r
   6 import compbio.engine.client.Executable;\r
   7 import compbio.runner.conservation.AACon;\r
   8 //import compbio.runner.predictors.Jpred;\r
   9 import compbio.runner.disorder.Disembl;\r
  10 import compbio.runner.disorder.GlobPlot;\r
  11 import compbio.runner.disorder.IUPred;\r
  12 import compbio.runner.disorder.Jronn;\r
  13 import compbio.runner.msa.ClustalO;\r
  14 import compbio.runner.msa.ClustalW;\r
  15 import compbio.runner.msa.Mafft;\r
  16 import compbio.runner.msa.Muscle;\r
  17 import compbio.runner.msa.Probcons;\r
  18 import compbio.runner.msa.MSAprobs;\r
  19 import compbio.runner.msa.GLprobs;\r
  20 import compbio.runner.msa.Tcoffee;\r
  21 import compbio.runner.structure.RNAalifold;\r
  22 \r
  23 public class ServicesUtil {\r
  24 \r
  25         public static Services getServiceByRunner(Class<? extends Executable> class1) {\r
  26                 assert class1 != null;\r
  27                 String sname = class1.getSimpleName().toLowerCase();\r
  28                 for (Services service : Services.values()) {\r
  29                         if (service.toString().toLowerCase().contains(sname)) {\r
  30                                 return service;\r
  31                         }\r
  32                 }\r
  33                 return null;\r
  34         }\r
  35 \r
  36         private static Class<? extends Executable<?>> getServiceImpl(Services service) {\r
  37                 switch (service) {\r
  38                         case AAConWS :\r
  39                                 return AACon.class;\r
  40 //                      case JpredWS :\r
  41 //                              return Jpred.class;\r
  42                         case ClustalOWS :\r
  43                                 return ClustalO.class;\r
  44                         case ClustalWS :\r
  45                                 return ClustalW.class;\r
  46                         case MafftWS :\r
  47                                 return Mafft.class;\r
  48                         case MuscleWS :\r
  49                                 return Muscle.class;\r
  50                         case TcoffeeWS :\r
  51                                 return Tcoffee.class;\r
  52                         case ProbconsWS :\r
  53                                 return Probcons.class;\r
  54                         case MSAprobsWS :\r
  55                                 return MSAprobs.class;\r
  56                         case GLprobsWS :\r
  57                                 return GLprobs.class;\r
  58                         case DisemblWS :\r
  59                                 return Disembl.class;\r
  60                         case GlobPlotWS :\r
  61                                 return GlobPlot.class;\r
  62                         case JronnWS :\r
  63                                 return Jronn.class;\r
  64                         case IUPredWS :\r
  65                                 return IUPred.class;\r
  66                         case RNAalifoldWS :\r
  67                                 return RNAalifold.class;\r
  68                         default :\r
  69                                 throw new RuntimeException("Unknown web service implementation class for service: " + service);\r
  70                 }\r
  71         }\r
  72 \r
  73         public static Class<? extends Executable<?>> getRunnerByJobDirectory(File jobdir) {\r
  74                 Services service = getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));\r
  75                 return getServiceImpl(service);\r
  76         }\r
  77 \r
  78         private static String getRunnerNameByJobDirectory(File jobdir) {\r
  79                 String name = jobdir.getName().split("#")[0];\r
  80 \r
  81                 if (name.startsWith(ConfExecutable.CLUSTER_TASK_ID_PREFIX)) {\r
  82                         assert ConfExecutable.CLUSTER_TASK_ID_PREFIX.length() == 1;\r
  83                         name = name.substring(1);\r
  84                 }\r
  85                 return name;\r
  86         }\r
  87 \r
  88         public static Services getServiceByJobDirectory(File jobdir) {\r
  89                 return getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));\r
  90         }\r
  91 \r
  92         private static Services getServiceByRunnerName(String name) {\r
  93                 for (Services service : Services.values()) {\r
  94                         String runnerName = getServiceImpl(service).getSimpleName().toLowerCase();\r
  95                         name = name.trim().toLowerCase();\r
  96                         if (name.startsWith(runnerName)) {\r
  97                                 return service;\r
  98                         }\r
  99                 }\r
 100                 return null;\r
 101         }\r
 102 \r
 103 }\r