website/dm_javadoc/compbio/data/msa/package-summary.html

   1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
   2 <!--NewPage-->\r
   3 <HTML>\r
   4 <HEAD>\r
   5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:08:24 GMT 2011 -->\r
   6 <TITLE>\r
   7 compbio.data.msa\r
   8 </TITLE>\r
   9 \r
  10 <META NAME="date" CONTENT="2011-12-07">\r
  11 \r
  12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
  13 \r
  14 <SCRIPT type="text/javascript">\r
  15 function windowTitle()\r
  16 {\r
  17     if (location.href.indexOf('is-external=true') == -1) {\r
  18         parent.document.title="compbio.data.msa";\r
  19     }\r
  20 }\r
  21 </SCRIPT>\r
  22 <NOSCRIPT>\r
  23 </NOSCRIPT>\r
  24 \r
  25 </HEAD>\r
  26 \r
  27 <BODY BGCOLOR="white" onload="windowTitle();">\r
  28 <HR>\r
  29 \r
  30 \r
  31 <!-- ========= START OF TOP NAVBAR ======= -->\r
  32 <A NAME="navbar_top"><!-- --></A>\r
  33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
  34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
  35 <TR>\r
  36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
  37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
  38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
  39   <TR ALIGN="center" VALIGN="top">\r
  40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
  41   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Package</B></FONT>&nbsp;</TD>\r
  42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
  43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-use.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
  44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
  45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
  46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
  47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
  48   </TR>\r
  49 </TABLE>\r
  50 </TD>\r
  51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
  52 </EM>\r
  53 </TD>\r
  54 </TR>\r
  55 \r
  56 <TR>\r
  57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
  58 &nbsp;PREV PACKAGE&nbsp;\r
  59 &nbsp;<A HREF="../../../compbio/data/msa/jaxws/package-summary.html"><B>NEXT PACKAGE</B></A></FONT></TD>\r
  60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
  61   <A HREF="../../../index.html?compbio/data/msa/package-summary.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
  62 &nbsp;<A HREF="package-summary.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
  63 &nbsp;<SCRIPT type="text/javascript">\r
  64   <!--\r
  65   if(window==top) {\r
  66     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
  67   }\r
  68   //-->\r
  69 </SCRIPT>\r
  70 <NOSCRIPT>\r
  71   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
  72 </NOSCRIPT>\r
  73 \r
  74 \r
  75 </FONT></TD>\r
  76 </TR>\r
  77 </TABLE>\r
  78 <A NAME="skip-navbar_top"></A>\r
  79 <!-- ========= END OF TOP NAVBAR ========= -->\r
  80 \r
  81 <HR>\r
  82 <H2>\r
  83 Package compbio.data.msa\r
  84 </H2>\r
  85 Web Service interfaces for JAva Bioinformatics Analysis Web Services.\r
  86 <P>\r
  87 <B>See:</B>\r
  88 <BR>\r
  89 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<A HREF="#package_description"><B>Description</B></A>\r
  90 <P>\r
  91 \r
  92 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
  93 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
  94 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
  95 <B>Interface Summary</B></FONT></TH>\r
  96 </TR>\r
  97 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  98 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></B></TD>\r
  99 <TD>This is a marker interface, contains no methods</TD>\r
 100 </TR>\r
 101 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 102 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</A></B></TD>\r
 103 <TD>&nbsp;</TD>\r
 104 </TR>\r
 105 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 106 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata&lt;T&gt;</A></B></TD>\r
 107 <TD>&nbsp;</TD>\r
 108 </TR>\r
 109 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 110 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS&lt;T&gt;</A></B></TD>\r
 111 <TD>Multiple Sequence Alignment (MSA) Web Services Interface</TD>\r
 112 </TR>\r
 113 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 114 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa">RegistryWS</A></B></TD>\r
 115 <TD>JABAWS services registry</TD>\r
 116 </TR>\r
 117 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 118 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation&lt;T&gt;</A></B></TD>\r
 119 <TD>Interface for tools that results to one or more annotation to sequence(s)
 120
 121  Single, multiple sequences their groups or alignments can be annotated</TD>\r
 122 </TR>\r
 123 </TABLE>\r
 124 &nbsp;\r
 125 \r
 126 <P>\r
 127 \r
 128 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 129 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 130 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 131 <B>Class Summary</B></FONT></TH>\r
 132 </TR>\r
 133 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 134 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/Category.html" title="class in compbio.data.msa">Category</A></B></TD>\r
 135 <TD>Class that splits <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client"><CODE>Services</CODE></A> to categories.</TD>\r
 136 </TR>\r
 137 </TABLE>\r
 138 &nbsp;\r
 139 \r
 140 <P>\r
 141 <A NAME="package_description"><!-- --></A><H2>\r
 142 Package compbio.data.msa Description\r
 143 </H2>\r
 144 \r
 145 <P>\r
 146 Web Service interfaces for JAva Bioinformatics Analysis Web Services.\r
 147 <P>\r
 148 \r
 149 <P>\r
 150 <DL>\r
 151 <DT><B>Version:</B></DT>\r
 152   <DD>1.0     April 2010</DD>\r
 153 <DT><B>Author:</B></DT>\r
 154   <DD>Peter Troshin</DD>\r
 155 </DL>\r
 156 <HR>\r
 157 \r
 158 \r
 159 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 160 <A NAME="navbar_bottom"><!-- --></A>\r
 161 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
 162 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
 163 <TR>\r
 164 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
 165 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
 166 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
 167   <TR ALIGN="center" VALIGN="top">\r
 168   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
 169   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Package</B></FONT>&nbsp;</TD>\r
 170   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
 171   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-use.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
 172   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
 173   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
 174   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
 175   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
 176   </TR>\r
 177 </TABLE>\r
 178 </TD>\r
 179 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
 180 </EM>\r
 181 </TD>\r
 182 </TR>\r
 183 \r
 184 <TR>\r
 185 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 186 &nbsp;PREV PACKAGE&nbsp;\r
 187 &nbsp;<A HREF="../../../compbio/data/msa/jaxws/package-summary.html"><B>NEXT PACKAGE</B></A></FONT></TD>\r
 188 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 189   <A HREF="../../../index.html?compbio/data/msa/package-summary.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
 190 &nbsp;<A HREF="package-summary.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
 191 &nbsp;<SCRIPT type="text/javascript">\r
 192   <!--\r
 193   if(window==top) {\r
 194     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
 195   }\r
 196   //-->\r
 197 </SCRIPT>\r
 198 <NOSCRIPT>\r
 199   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
 200 </NOSCRIPT>\r
 201 \r
 202 \r
 203 </FONT></TD>\r
 204 </TR>\r
 205 </TABLE>\r
 206 <A NAME="skip-navbar_bottom"></A>\r
 207 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
 208 \r
 209 <HR>\r
 210 \r
 211 </BODY>\r
 212 </HTML>\r