website/dm_javadoc/compbio/data/sequence/Score.html

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   7 Score\r
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  91 compbio.data.sequence</FONT>\r
  92 <BR>\r
  93 Class Score</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
  96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.sequence.Score</B>\r
  97 </PRE>\r
  98 <HR>\r
  99 <DL>\r
 100 <DT><PRE><FONT SIZE="-1">@Immutable\r
 101 </FONT>public class <B>Score</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 102 </PRE>\r
 103 \r
 104 <P>\r
 105 <HR>\r
 106 \r
 107 <P>\r
 108 \r
 109 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
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 113 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 114 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 115 <B>Constructor Summary</B></FONT></TH>\r
 116 </TR>\r
 117 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 118 <TD><CODE><B><A HREF="../../../compbio/data/sequence/Score.html#Score(compbio.data.sequence.Method, java.util.List)">Score</A></B>(<A HREF="../../../compbio/data/sequence/Method.html" title="enum in compbio.data.sequence">Method</A>&nbsp;method,\r
 119       <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>&gt;&nbsp;scores)</CODE>\r
 120 \r
 121 <BR>\r
 122 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 123 </TR>\r
 124 </TABLE>\r
 125 &nbsp;\r
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 127 \r
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 132 <B>Method Summary</B></FONT></TH>\r
 133 </TR>\r
 134 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 135 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 136 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
 137 <TD><CODE><B><A HREF="../../../compbio/data/sequence/Score.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</CODE>\r
 138 \r
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 144 <CODE>&nbsp;<A HREF="../../../compbio/data/sequence/Method.html" title="enum in compbio.data.sequence">Method</A></CODE></FONT></TD>\r
 145 <TD><CODE><B><A HREF="../../../compbio/data/sequence/Score.html#getMethod()">getMethod</A></B>()</CODE>\r
 146 \r
 147 <BR>\r
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 149 </TR>\r
 150 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 151 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 152 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>&gt;</CODE></FONT></TD>\r
 153 <TD><CODE><B><A HREF="../../../compbio/data/sequence/Score.html#getScores()">getScores</A></B>()</CODE>\r
 154 \r
 155 <BR>\r
 156 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 157 </TR>\r
 158 <TR BGCOLOR="white" CLASS="TableRowColor">\r
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 160 <CODE>&nbsp;int</CODE></FONT></TD>\r
 161 <TD><CODE><B><A HREF="../../../compbio/data/sequence/Score.html#hashCode()">hashCode</A></B>()</CODE>\r
 162 \r
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 169 <TD><CODE><B><A HREF="../../../compbio/data/sequence/Score.html#toString()">toString</A></B>()</CODE>\r
 170 \r
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 172 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
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 178 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
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 182 </TR>\r
 183 </TABLE>\r
 184 &nbsp;\r
 185 <P>\r
 186 \r
 187 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
 188 \r
 189 <A NAME="constructor_detail"><!-- --></A>\r
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 194 </TR>\r
 195 </TABLE>\r
 196 \r
 197 <A NAME="Score(compbio.data.sequence.Method, java.util.List)"><!-- --></A><H3>\r
 198 Score</H3>\r
 199 <PRE>\r
 200 public <B>Score</B>(<A HREF="../../../compbio/data/sequence/Method.html" title="enum in compbio.data.sequence">Method</A>&nbsp;method,\r
 201              <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>&gt;&nbsp;scores)</PRE>\r
 202 <DL>\r
 203 </DL>\r
 204 \r
 205 <!-- ============ METHOD DETAIL ========== -->\r
 206 \r
 207 <A NAME="method_detail"><!-- --></A>\r
 208 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 209 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 210 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 211 <B>Method Detail</B></FONT></TH>\r
 212 </TR>\r
 213 </TABLE>\r
 214 \r
 215 <A NAME="getMethod()"><!-- --></A><H3>\r
 216 getMethod</H3>\r
 217 <PRE>\r
 218 public <A HREF="../../../compbio/data/sequence/Method.html" title="enum in compbio.data.sequence">Method</A> <B>getMethod</B>()</PRE>\r
 219 <DL>\r
 220 <DD><DL>\r
 221 </DL>\r
 222 </DD>\r
 223 </DL>\r
 224 <HR>\r
 225 \r
 226 <A NAME="getScores()"><!-- --></A><H3>\r
 227 getScores</H3>\r
 228 <PRE>\r
 229 public <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>&gt; <B>getScores</B>()</PRE>\r
 230 <DL>\r
 231 <DD><DL>\r
 232 </DL>\r
 233 </DD>\r
 234 </DL>\r
 235 <HR>\r
 236 \r
 237 <A NAME="toString()"><!-- --></A><H3>\r
 238 toString</H3>\r
 239 <PRE>\r
 240 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>\r
 241 <DL>\r
 242 <DD><DL>\r
 243 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 244 </DD>\r
 245 <DD><DL>\r
 246 </DL>\r
 247 </DD>\r
 248 </DL>\r
 249 <HR>\r
 250 \r
 251 <A NAME="hashCode()"><!-- --></A><H3>\r
 252 hashCode</H3>\r
 253 <PRE>\r
 254 public int <B>hashCode</B>()</PRE>\r
 255 <DL>\r
 256 <DD><DL>\r
 257 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
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 260 </DL>\r
 261 </DD>\r
 262 </DL>\r
 263 <HR>\r
 264 \r
 265 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>\r
 266 equals</H3>\r
 267 <PRE>\r
 268 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</PRE>\r
 269 <DL>\r
 270 <DD><DL>\r
 271 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
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