website/tests/Ant suite/Ant test.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <testsuite name="Ant test" failures="0" tests="216" time="453.928" errors="0">
   3   <properties/>
   4   <testcase name="testPull" time="0.014" classname="compbio.engine.FilePullerTester"/>
   5   <testcase name="testCache" time="6.008" classname="compbio.engine.FilePullerTester"/>
   6   <testcase name="testArguments" time="1.649" classname="compbio.runner.msa.ClustalWParametersTester"/>
   7   <testcase name="testConfiguration" time="0.0010" classname="compbio.runner.msa.ClustalWParametersTester"/>
   8   <testcase name="testConstrainedParametersMaxValues" time="0.678" classname="compbio.runner.msa.ClustalWParametersTester"/>
   9   <testcase name="testConstrainedParametersMinValues" time="0.682" classname="compbio.runner.msa.ClustalWParametersTester"/>
  10   <testcase name="testConstrainedParametersRandomValues" time="0.672" classname="compbio.runner.msa.ClustalWParametersTester"/>
  11   <testcase name="testDefaultParameters" time="0.129" classname="compbio.runner.msa.ClustalWParametersTester"/>
  12   <testcase name="testOptions" time="0.396" classname="compbio.runner.msa.ClustalWParametersTester"/>
  13   <testcase name="testParameters" time="1.074" classname="compbio.runner.msa.ClustalWParametersTester"/>
  14   <testcase name="testPresets" time="0.129" classname="compbio.runner.msa.ClustalWParametersTester"/>
  15   <testcase name="testReadClustalFile" time="0.012" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
  16   <testcase name="testReadClustalFileLongNames" time="0.019" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
  17   <testcase name="testReadClustalFileShortNames" time="0.014" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
  18   <testcase name="test" time="0.018" classname="compbio.data.sequence.FastaReaderTester"/>
  19   <testcase name="testProteinSequenceGeneration" time="0.0070" classname="compbio.data.sequence.FastaSequenceGeneratorTester"/>
  20   <testcase name="testGetFormattedFasta" time="0.0" classname="compbio.data.sequence.FastaSequenceTester"/>
  21   <testcase name="loadJronnFile" time="0.027" classname="compbio.data.sequence.SequenceUtilTester"/>
  22   <testcase name="testCleanProteinSequence" time="0.0010" classname="compbio.data.sequence.SequenceUtilTester"/>
  23   <testcase name="testCleanSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
  24   <testcase name="testDeepCleanSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
  25   <testcase name="testReadAAConResults" time="0.269" classname="compbio.data.sequence.SequenceUtilTester"/>
  26   <testcase name="testReadDisemblResults" time="0.125" classname="compbio.data.sequence.SequenceUtilTester"/>
  27   <testcase name="testReadGlobPlotResults" time="0.104" classname="compbio.data.sequence.SequenceUtilTester"/>
  28   <testcase name="testReadIUPredForGlobDomain" time="0.0060" classname="compbio.data.sequence.SequenceUtilTester"/>
  29   <testcase name="testReadIUPredForShortAndLongDisorder" time="0.036" classname="compbio.data.sequence.SequenceUtilTester"/>
  30   <testcase name="testReadWriteFasta" time="0.0080" classname="compbio.data.sequence.SequenceUtilTester"/>
  31   <testcase name="testisNonAmbNucleotideSequence" time="0.0010" classname="compbio.data.sequence.SequenceUtilTester"/>
  32   <testcase name="testisProteinSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
  33   <testcase name="testGetAsyncEngine" time="0.012" classname="compbio.engine.EngineConfiguratorTester"/>
  34   <testcase name="testGetSyncEngine" time="0.0010" classname="compbio.engine.EngineConfiguratorTester"/>
  35   <testcase name="testGetDelay" time="0.0" classname="compbio.engine.FilePullerTester"/>
  36   <testcase name="testGet" time="0.0020" classname="compbio.engine.FilePullerTester"/>
  37   <testcase name="testLoadBalance" time="0.057" classname="compbio.engine.LoadBalancerTester"/>
  38   <testcase name="test" time="5.011" classname="compbio.engine.PulledFileCacheTester"/>
  39   <testcase name="testCommandBuilding" time="0.0010" classname="compbio.engine.client.CommandBuilderTester"/>
  40   <testcase name="testOptionsToCommand" time="0.04" classname="compbio.engine.client.CommandBuilderTester"/>
  41   <testcase name="testSpaceDelimiterExecutable" time="0.0" classname="compbio.engine.client.CommandBuilderTester"/>
  42   <testcase name="testIsAbsolutePath" time="0.0" classname="compbio.engine.client.PathValidatorTester"/>
  43   <testcase name="testGetClassPath" time="0.0010" classname="compbio.engine.client.PathValidatorTester"/>
  44   <testcase name="testTaskList" time="3.953" classname="compbio.engine.cluster.drmaa.ClusterSessionTester"/>
  45   <testcase name="testCancel" time="1.257" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
  46   <testcase name="testGetJobStatus" time="4.765" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
  47   <testcase name="testSubmit" time="3.976" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
  48   <testcase name="testCancel" time="1.538" classname="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
  49   <testcase name="testSubmit" time="3.508" classname="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
  50   <testcase name="testParser" time="0.0010" classname="compbio.engine.cluster.drmaa.UtilTester"/>
  51   <testcase name="testQueue" time="0.0" classname="compbio.engine.cluster.dundee._QueueTester"/>
  52   <testcase name="testGetDirectory" time="0.104" classname="compbio.engine.conf.DirectoryManagerTester"/>
  53   <testcase name="testGetDirectory" time="0.101" classname="compbio.engine.conf.DirectoryManagerTester"/>
  54   <testcase name="testGetDirectory" time="0.098" classname="compbio.engine.conf.DirectoryManagerTester"/>
  55   <testcase name="testGetDirectory" time="0.097" classname="compbio.engine.conf.DirectoryManagerTester"/>
  56   <testcase name="testClusterEngineConf" time="0.0010" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
  57   <testcase name="validateClustalConfiguration" time="0.0" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
  58   <testcase name="validateMafftConfiguration" time="0.0020" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
  59   <testcase name="validateMuscleConfiguration" time="0.0" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
  60   <testcase name="validateTcoffeeConfiguration" time="0.0" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
  61   <testcase name="testMarshalling" time="0.0040" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
  62   <testcase name="testSchemaFromCodeGeneration" time="0.13" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
  63   <testcase name="testUnMarshalling" time="0.017" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
  64   <testcase name="testValidation" time="0.082" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
  65   <testcase name="testValidationOnMarshalling" time="0.01" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
  66   <testcase name="testAsyncCancelOperation" time="0.017" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  67   <testcase name="testAsyncRetrievOperation" time="0.124" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  68   <testcase name="testCancelCompletedTaskLocally" time="3.017" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  69   <testcase name="testCancelLocally" time="0.013" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  70   <testcase name="testGetStatus" time="19.322" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  71   <testcase name="testGetStatus" time="19.351" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  72   <testcase name="testGetStatus" time="19.358" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  73   <testcase name="testGetStatus" time="19.362" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  74   <testcase name="testGetStatus" time="19.298" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  75   <testcase name="testMultipleCancelLocally" time="0.054" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  76   <testcase name="testSubmitLocally" time="0.122" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  77   <testcase name="testSubmitLocally" time="0.151" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  78   <testcase name="testSubmitLocally" time="0.17" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  79   <testcase name="testSubmitLocally" time="0.187" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  80   <testcase name="testSubmitLocally" time="0.105" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  81   <testcase name="testCancelCompletedTaskLocally" time="0.049" classname="compbio.engine.local.LocalRunnerTester"/>
  82   <testcase name="testCancelLocally" time="0.017" classname="compbio.engine.local.LocalRunnerTester"/>
  83   <testcase name="testMultipleCancelLocally" time="0.044" classname="compbio.engine.local.LocalRunnerTester"/>
  84   <testcase name="testgetAllOptions" time="0.0010" classname="compbio.metadata.OptionCombinatorTester"/>
  85   <testcase name="testgetAllParameters" time="0.0030" classname="compbio.metadata.OptionCombinatorTester"/>
  86   <testcase name="testMarshalling" time="0.033" classname="compbio.metadata.OptionMarshallerTester"/>
  87   <testcase name="testUnMarshalling" time="0.065" classname="compbio.metadata.OptionMarshallerTester"/>
  88   <testcase name="marshallPreset" time="0.014" classname="compbio.metadata.PresetTester"/>
  89   <testcase name="testPresetWithMuptiOptions" time="0.0010" classname="compbio.metadata.PresetTester"/>
  90   <testcase name="validatePresets" time="0.0010" classname="compbio.metadata.PresetTester"/>
  91   <testcase name="testCreateNumParameterWithoutValidValue" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  92   <testcase name="testCreateParameter" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  93   <testcase name="testCreateParameterWithValidValueConstrain" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  94   <testcase name="testOptionNoDefaultValidate" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  95   <testcase name="testOptionSetInvalidValue" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  96   <testcase name="testOptionToCommand" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  97   <testcase name="testParameterToCommand" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  98   <testcase name="testValidate" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  99   <testcase name="testValidateBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
 100   <testcase name="testValidateLowerBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
 101   <testcase name="testValidateUpperBoundaryConstrainCheck" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
 102   <testcase name="testValidateValueConstrain" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
 103   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.MclTester"/>
 104   <testcase name="testGetTestCommand" time="0.0010" classname="compbio.runner._impl.NetNglycTester"/>
 105   <testcase name="testGetTestArgsCommand" time="0.0" classname="compbio.runner._impl.OBTester"/>
 106   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.OBTester"/>
 107   <testcase name="testGetTestArgsCommand" time="0.0" classname="compbio.runner._impl.RPSBlastTester"/>
 108   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.RPSBlastTester"/>
 109   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.RonnTester"/>
 110   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.Tmhmm2Tester"/>
 111   <testcase name="readStatistics" time="1.493" classname="compbio.runner.conservation.AAConTester"/>
 112   <testcase name="testConfigurationLoading" time="0.113" classname="compbio.runner.conservation.AAConTester"/>
 113   <testcase name="testPersistance" time="0.775" classname="compbio.runner.conservation.AAConTester"/>
 114   <testcase name="testRunLocally" time="0.827" classname="compbio.runner.conservation.AAConTester"/>
 115   <testcase name="testRunLocallyOnTwoCpu" time="0.289" classname="compbio.runner.conservation.AAConTester"/>
 116   <testcase name="testRunLocallyWithPreset" time="0.653" classname="compbio.runner.conservation.AAConTester"/>
 117   <testcase name="testRunOnCluster" time="3.64" classname="compbio.runner.conservation.AAConTester"/>
 118   <testcase name="testRunOnClusterAsync" time="5.018" classname="compbio.runner.conservation.AAConTester"/>
 119   <testcase name="readStatistics" time="0.0" classname="compbio.runner.disorder.DisemblTester"/>
 120   <testcase name="testConfigurationLoading" time="0.044" classname="compbio.runner.disorder.DisemblTester"/>
 121   <testcase name="testPersistance" time="1.297" classname="compbio.runner.disorder.DisemblTester"/>
 122   <testcase name="testRunLocally" time="0.579" classname="compbio.runner.disorder.DisemblTester"/>
 123   <testcase name="testRunOnCluster" time="2.047" classname="compbio.runner.disorder.DisemblTester"/>
 124   <testcase name="testRunOnClusterAsync" time="6.011" classname="compbio.runner.disorder.DisemblTester"/>
 125   <testcase name="readStatistics" time="0.0" classname="compbio.runner.disorder.GlobPlotTester"/>
 126   <testcase name="testConfigurationLoading" time="0.043" classname="compbio.runner.disorder.GlobPlotTester"/>
 127   <testcase name="testPersistance" time="0.98" classname="compbio.runner.disorder.GlobPlotTester"/>
 128   <testcase name="testRunLocally" time="0.454" classname="compbio.runner.disorder.GlobPlotTester"/>
 129   <testcase name="testRunOnCluster" time="2.503" classname="compbio.runner.disorder.GlobPlotTester"/>
 130   <testcase name="testRunOnClusterAsync" time="6.021" classname="compbio.runner.disorder.GlobPlotTester"/>
 131   <testcase name="testConfigurationLoading" time="0.069" classname="compbio.runner.disorder.IUPredTester"/>
 132   <testcase name="testPersistance" time="0.308" classname="compbio.runner.disorder.IUPredTester"/>
 133   <testcase name="testReadResults" time="0.025" classname="compbio.runner.disorder.IUPredTester"/>
 134   <testcase name="testRunLocally" time="0.196" classname="compbio.runner.disorder.IUPredTester"/>
 135   <testcase name="testRunLocallyWithParams" time="0.071" classname="compbio.runner.disorder.IUPredTester"/>
 136   <testcase name="testRunOnCluster" time="3.308" classname="compbio.runner.disorder.IUPredTester"/>
 137   <testcase name="testRunOnClusterAsync" time="6.025" classname="compbio.runner.disorder.IUPredTester"/>
 138   <testcase name="testSetParameter" time="0.0" classname="compbio.runner.disorder.IUPredTester"/>
 139   <testcase name="readStatistics" time="18.639" classname="compbio.runner.disorder.JronnTester"/>
 140   <testcase name="testConfigurationLoading" time="0.045" classname="compbio.runner.disorder.JronnTester"/>
 141   <testcase name="testPersistance" time="18.613" classname="compbio.runner.disorder.JronnTester"/>
 142   <testcase name="testRunLocally" time="18.541" classname="compbio.runner.disorder.JronnTester"/>
 143   <testcase name="testRunLocallyOnTwoCpu" time="7.131" classname="compbio.runner.disorder.JronnTester"/>
 144   <testcase name="testRunOnCluster" time="13.058" classname="compbio.runner.disorder.JronnTester"/>
 145   <testcase name="testRunOnClusterAsync" time="11.022" classname="compbio.runner.disorder.JronnTester"/>
 146   <testcase name="testRunWithMatrix" time="0.13" classname="compbio.runner.msa.ClustalWTester"/>
 147   <testcase name="testConfigurationLoading" time="0.046" classname="compbio.runner.msa.ClustalWTester"/>
 148   <testcase name="testRunLocally" time="0.132" classname="compbio.runner.msa.ClustalWTester"/>
 149   <testcase name="readStatisticsClusterExecution" time="1.64" classname="compbio.runner.msa.ClustalWTester"/>
 150   <testcase name="testRunOnCluster" time="5.003" classname="compbio.runner.msa.ClustalWTester"/>
 151   <testcase name="readStatistics" time="0.518" classname="compbio.runner.msa.ClustalWTester"/>
 152   <testcase name="testOptionsLocally" time="0.429" classname="compbio.runner.msa.ClustalWTester"/>
 153   <testcase name="testPersistance" time="0.303" classname="compbio.runner.msa.ClustalWTester"/>
 154   <testcase name="testLimitExceeded" time="0.014" classname="compbio.runner.msa.LimitTester"/>
 155   <testcase name="testLoadLimits" time="0.0" classname="compbio.runner.msa.LimitTester"/>
 156   <testcase name="testArguments" time="3.027" classname="compbio.runner.msa.MafftParametersTester"/>
 157   <testcase name="testConfiguration" time="0.0" classname="compbio.runner.msa.MafftParametersTester"/>
 158   <testcase name="testConstrainedParametersMaxValues" time="1.461" classname="compbio.runner.msa.MafftParametersTester"/>
 159   <testcase name="testConstrainedParametersMinValues" time="0.886" classname="compbio.runner.msa.MafftParametersTester"/>
 160   <testcase name="testConstrainedParametersRandomValues" time="3.53" classname="compbio.runner.msa.MafftParametersTester"/>
 161   <testcase name="testDefaultParameters" time="4.507" classname="compbio.runner.msa.MafftParametersTester"/>
 162   <testcase name="testOptions" time="0.971" classname="compbio.runner.msa.MafftParametersTester"/>
 163   <testcase name="testParameters" time="1.179" classname="compbio.runner.msa.MafftParametersTester"/>
 164   <testcase name="testPresets" time="0.965" classname="compbio.runner.msa.MafftParametersTester"/>
 165   <testcase name="readStatistics" time="0.516" classname="compbio.runner.msa.MafftTester"/>
 166   <testcase name="testClusterExecute" time="1.264" classname="compbio.runner.msa.MafftTester"/>
 167   <testcase name="testConfigurationLoading" time="0.062" classname="compbio.runner.msa.MafftTester"/>
 168   <testcase name="testExecute" time="0.162" classname="compbio.runner.msa.MafftTester"/>
 169   <testcase name="testPersistance" time="0.305" classname="compbio.runner.msa.MafftTester"/>
 170   <testcase name="testRunOnClusterAsyncCheckStatusLongPoolingTime" time="5.535" classname="compbio.runner.msa.MafftTester"/>
 171   <testcase name="testSetInputTester" time="0.0" classname="compbio.runner.msa.MafftTester"/>
 172   <testcase name="testArguments" time="4.387" classname="compbio.runner.msa.MuscleParametersTester"/>
 173   <testcase name="testConfiguration" time="0.0010" classname="compbio.runner.msa.MuscleParametersTester"/>
 174   <testcase name="testConstrainedParametersMaxValues" time="1.977" classname="compbio.runner.msa.MuscleParametersTester"/>
 175   <testcase name="testConstrainedParametersMinValues" time="1.112" classname="compbio.runner.msa.MuscleParametersTester"/>
 176   <testcase name="testConstrainedParametersRandomValues" time="2.749" classname="compbio.runner.msa.MuscleParametersTester"/>
 177   <testcase name="testDefaultParameters" time="0.1" classname="compbio.runner.msa.MuscleParametersTester"/>
 178   <testcase name="testOptions" time="1.36" classname="compbio.runner.msa.MuscleParametersTester"/>
 179   <testcase name="testParameters" time="1.919" classname="compbio.runner.msa.MuscleParametersTester"/>
 180   <testcase name="testPresets" time="0.242" classname="compbio.runner.msa.MuscleParametersTester"/>
 181   <testcase name="readStatistics" time="0.52" classname="compbio.runner.msa.MuscleTester"/>
 182   <testcase name="testConfigurationLoading" time="0.043" classname="compbio.runner.msa.MuscleTester"/>
 183   <testcase name="testPersistance" time="0.233" classname="compbio.runner.msa.MuscleTester"/>
 184   <testcase name="testRunLocally" time="0.1" classname="compbio.runner.msa.MuscleTester"/>
 185   <testcase name="testRunOnCluster" time="3.867" classname="compbio.runner.msa.MuscleTester"/>
 186   <testcase name="testArguments" time="1.819" classname="compbio.runner.msa.ProbconsParametersTester"/>
 187   <testcase name="testConfiguration" time="0.0" classname="compbio.runner.msa.ProbconsParametersTester"/>
 188   <testcase name="testConstrainedParametersMaxValues" time="37.102" classname="compbio.runner.msa.ProbconsParametersTester"/>
 189   <testcase name="testConstrainedParametersMinValues" time="0.768" classname="compbio.runner.msa.ProbconsParametersTester"/>
 190   <testcase name="testConstrainedParametersRandomValues" time="70.319" classname="compbio.runner.msa.ProbconsParametersTester"/>
 191   <testcase name="testDefaultParameters" time="4.845" classname="compbio.runner.msa.ProbconsParametersTester"/>
 192   <testcase name="testOptions" time="0.443" classname="compbio.runner.msa.ProbconsParametersTester"/>
 193   <testcase name="testParameters" time="1.344" classname="compbio.runner.msa.ProbconsParametersTester"/>
 194   <testcase name="readStatistics" time="0.455" classname="compbio.runner.msa.ProbconsTester"/>
 195   <testcase name="testClusterExecute" time="2.71" classname="compbio.runner.msa.ProbconsTester"/>
 196   <testcase name="testConfigurationLoading" time="0.089" classname="compbio.runner.msa.ProbconsTester"/>
 197   <testcase name="testExecute" time="0.455" classname="compbio.runner.msa.ProbconsTester"/>
 198   <testcase name="testPersistance" time="0.527" classname="compbio.runner.msa.ProbconsTester"/>
 199   <testcase name="testSetInputTester" time="0.0" classname="compbio.runner.msa.ProbconsTester"/>
 200   <testcase name="testArguments" time="4.098" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 201   <testcase name="testConfiguration" time="0.0" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 202   <testcase name="testConstrainedParametersMaxValues" time="4.319" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 203   <testcase name="testConstrainedParametersMinValues" time="2.887" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 204   <testcase name="testConstrainedParametersRandomValues" time="8.762" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 205   <testcase name="testDefaultParameters" time="3.85" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 206   <testcase name="testOptions" time="0.377" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 207   <testcase name="testParameters" time="3.8" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 208   <testcase name="testPresets" time="0.214" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 209   <testcase name="readStatistics" time="0.516" classname="compbio.runner.msa.TcoffeeTester"/>
 210   <testcase name="testClusterExecute" time="5.084" classname="compbio.runner.msa.TcoffeeTester"/>
 211   <testcase name="testConfigurationLoading" time="0.039" classname="compbio.runner.msa.TcoffeeTester"/>
 212   <testcase name="testExecute" time="0.364" classname="compbio.runner.msa.TcoffeeTester"/>
 213   <testcase name="testNcore" time="0.0" classname="compbio.runner.msa.TcoffeeTester"/>
 214   <testcase name="testPersistance" time="0.769" classname="compbio.runner.msa.TcoffeeTester"/>
 215   <testcase name="testCollectStat" time="0.271" classname="compbio.stat.collector.ExecutionStatCollectorTester"/>
 216   <testcase name="testHasCompleted" time="0.0010" classname="compbio.stat.collector.ExecutionStatCollectorTester"/>
 217   <testcase name="testUpdateStatTester" time="35.012" classname="compbio.stat.collector.ExecutionStatCollectorTester"/>
 218   <testcase name="testVerifyJobsCount" time="0.412" classname="compbio.stat.collector.StatDBTester"/>
 219   <testcase name="testGetStats" time="0.022" classname="compbio.stat.servlet.util.StatCollectionTester"/>
 220 </testsuite>