-Add AACon ws\r
-Add iupred ws http://iupred.enzim.hu/\r
-Add globprot ws - does not report raw scores, just regions\r
-Add ronn ws\r
-\r
-Philogeny Mrbayes + Philip\r
- \r
-USE CASE - TURN ALIGNMENT INTO PROFILE AND SEARCH SEQUENCE DATABASE USECASE\r
-- Receive user alignment \r
-- use hmmerbuild to turn it to profile\r
-- use hmmersearch to search the database \r
-\r
-#END OF - TURN ALIGNMENT INTO PROFILE AND SEARCH SEQUENCE DATABASE USECASE \r
-\r
-New data model for representing psiblast,blast,phmmer,jackhmmer results\r
-\r
-new parsers for the above programmes output (Stockholm MSA format?)\r
-\r
-Think hard on what to do with large output files? \r
-e.g. serve the hits table in full, but retrieve alignments on demand.\r
-What actually needs to be sent? \r
-\r
-Add facility to distribute other results of the calculations like the trees and \r
-annotation file for probcons. \r
-\r
-# END OF SEARCHING SEQUENCE DATABASE USECASE\r
-\r