-float \hyperlink{group__pf__fold_ga1839c61275760944b3a007c41d5c0823}{pf\-\_\-fold\-\_\-par} (const char $\ast$sequence, char $\ast$structure, \hyperlink{structpf__paramT}{pf\-\_\-param\-T} $\ast$parameters, int calculate\-\_\-bppm, int is\-\_\-constrained, int is\-\_\-circular)
-\begin{DoxyCompactList}\small\item\em Compute the partition function $Q$ for a given R\-N\-A sequence. \end{DoxyCompactList}\item
-float \hyperlink{group__pf__fold_gadc3db3d98742427e7001a7fd36ef28c2}{pf\-\_\-fold} (const char $\ast$sequence, char $\ast$structure)
-\begin{DoxyCompactList}\small\item\em Compute the partition function $Q$ of an R\-N\-A sequence. \end{DoxyCompactList}\item
-float \hyperlink{group__pf__fold_ga819ce5fca8984004ac81c4a3b04cb735}{pf\-\_\-circ\-\_\-fold} (const char $\ast$sequence, char $\ast$structure)
-\begin{DoxyCompactList}\small\item\em Compute the partition function of a circular R\-N\-A sequence. \end{DoxyCompactList}\item
-void \hyperlink{group__pf__fold_gae73db3f49a94f0f72e067ecd12681dbd}{free\-\_\-pf\-\_\-arrays} (void)
-\begin{DoxyCompactList}\small\item\em Free arrays for the partition function recursions. \end{DoxyCompactList}\item
-void \hyperlink{group__pf__fold_ga384e927890f9c034ff09fa66da102d28}{update\-\_\-pf\-\_\-params} (int length)
-\begin{DoxyCompactList}\small\item\em Recalculate energy parameters. \end{DoxyCompactList}\item
-\hypertarget{group__pf__fold_ga0733527a94de3b79eee3c3c03c99c1bc}{void \hyperlink{group__pf__fold_ga0733527a94de3b79eee3c3c03c99c1bc}{update\-\_\-pf\-\_\-params\-\_\-par} (int length, \hyperlink{structpf__paramT}{pf\-\_\-param\-T} $\ast$parameters)}\label{group__pf__fold_ga0733527a94de3b79eee3c3c03c99c1bc}
-
-\begin{DoxyCompactList}\small\item\em Recalculate energy parameters. \end{DoxyCompactList}\item
-double $\ast$ \hyperlink{group__pf__fold_ga6d463707d5f64bdc4d21515b7dd9b115}{export\-\_\-bppm} (void)
+float \hyperlink{group__pf__fold_ga1839c61275760944b3a007c41d5c0823}{pf\_\-fold\_\-par} (const char $\ast$sequence, char $\ast$structure, \hyperlink{structpf__paramT}{pf\_\-paramT} $\ast$parameters, int calculate\_\-bppm, int is\_\-constrained, int is\_\-circular)
+\begin{DoxyCompactList}\small\item\em Compute the partition function $Q$ for a given RNA sequence. \item\end{DoxyCompactList}\item
+float \hyperlink{group__pf__fold_gadc3db3d98742427e7001a7fd36ef28c2}{pf\_\-fold} (const char $\ast$sequence, char $\ast$structure)
+\begin{DoxyCompactList}\small\item\em Compute the partition function $Q$ of an RNA sequence. \item\end{DoxyCompactList}\item
+float \hyperlink{group__pf__fold_ga819ce5fca8984004ac81c4a3b04cb735}{pf\_\-circ\_\-fold} (const char $\ast$sequence, char $\ast$structure)
+\begin{DoxyCompactList}\small\item\em Compute the partition function of a circular RNA sequence. \item\end{DoxyCompactList}\item
+void \hyperlink{group__pf__fold_gae73db3f49a94f0f72e067ecd12681dbd}{free\_\-pf\_\-arrays} (void)
+\begin{DoxyCompactList}\small\item\em Free arrays for the partition function recursions. \item\end{DoxyCompactList}\item
+void \hyperlink{group__pf__fold_ga384e927890f9c034ff09fa66da102d28}{update\_\-pf\_\-params} (int length)
+\begin{DoxyCompactList}\small\item\em Recalculate energy parameters. \item\end{DoxyCompactList}\item
+\hypertarget{group__pf__fold_ga0733527a94de3b79eee3c3c03c99c1bc}{
+void \hyperlink{group__pf__fold_ga0733527a94de3b79eee3c3c03c99c1bc}{update\_\-pf\_\-params\_\-par} (int length, \hyperlink{structpf__paramT}{pf\_\-paramT} $\ast$parameters)}
+\label{group__pf__fold_ga0733527a94de3b79eee3c3c03c99c1bc}
+
+\begin{DoxyCompactList}\small\item\em Recalculate energy parameters. \item\end{DoxyCompactList}\item
+double $\ast$ \hyperlink{group__pf__fold_ga6d463707d5f64bdc4d21515b7dd9b115}{export\_\-bppm} (void)