clustalw.presets.file=conf/settings/ClustalPresets.xml\r
clustalw.parameters.file=conf/settings/ClustalParameters.xml\r
#clustalw.limits.file=conf/settings/ClustalLimits.xml\r
clustalw.presets.file=conf/settings/ClustalPresets.xml\r
clustalw.parameters.file=conf/settings/ClustalParameters.xml\r
#clustalw.limits.file=conf/settings/ClustalLimits.xml\r
## This parameter specifies the number of CPUs to use\r
clustalo.cluster.cpunum=4\r
## This reserves a slot with CPUNUM on the cluster for the task\r
## This parameter specifies the number of CPUs to use\r
clustalo.cluster.cpunum=4\r
## This reserves a slot with CPUNUM on the cluster for the task\r
muscle.presets.file=conf/settings/MusclePresets.xml\r
muscle.parameters.file=conf/settings/MuscleParameters.xml\r
#muscle.limits.file=conf/settings/MuscleLimits.xml\r
muscle.presets.file=conf/settings/MusclePresets.xml\r
muscle.parameters.file=conf/settings/MuscleParameters.xml\r
#muscle.limits.file=conf/settings/MuscleLimits.xml\r
mafft.presets.file=conf/settings/MafftPresets.xml\r
mafft.parameters.file=conf/settings/MafftParameters.xml\r
#mafft.limits.file=conf/settings/MafftLimits.xml\r
mafft.presets.file=conf/settings/MafftPresets.xml\r
mafft.parameters.file=conf/settings/MafftParameters.xml\r
#mafft.limits.file=conf/settings/MafftLimits.xml\r
## This parameter specifies the number of CPUs to use\r
#tcoffee.cluster.cpunum=4\r
## This reserves a slot with CPUNUM on the cluster for the task\r
## This parameter specifies the number of CPUs to use\r
#tcoffee.cluster.cpunum=4\r
## This reserves a slot with CPUNUM on the cluster for the task\r
#cluster.probcons.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/probcons/probcons\r
probcons.parameters.file=conf/settings/ProbconsParameters.xml\r
#probcons.limits.file=conf/settings/ProbconsLimits.xml\r
#cluster.probcons.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/probcons/probcons\r
probcons.parameters.file=conf/settings/ProbconsParameters.xml\r
#probcons.limits.file=conf/settings/ProbconsLimits.xml\r
## This parameter specifies the number of CPU to use\r
#jronn.cluster.cpunum=4\r
## This reserves a slot with CPUNUM on the cluster for the task\r
## This parameter specifies the number of CPU to use\r
#jronn.cluster.cpunum=4\r
## This reserves a slot with CPUNUM on the cluster for the task\r
\r
\r
##### DISEMBL CONFIGURATION ###### \r
local.disembl.bin=binaries/src/disembl/DisEMBL.py\r
#cluster.disembl.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/disembl/DisEMBL.py\r
#disembl.limits.file=conf/settings/DisemblLimits.xml\r
\r
\r
##### DISEMBL CONFIGURATION ###### \r
local.disembl.bin=binaries/src/disembl/DisEMBL.py\r
#cluster.disembl.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/disembl/DisEMBL.py\r
#disembl.limits.file=conf/settings/DisemblLimits.xml\r
#cluster.globplot.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/globplot/GlobPlot.py\r
#globplot.bin.env=PYTHONPATH#/homes/pvtroshin/workspace/jaba2/binaries/src/globplot/biopython-1.50 \r
globplot.limits.file=conf/settings/GlobPlotLimits.xml\r
#cluster.globplot.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/globplot/GlobPlot.py\r
#globplot.bin.env=PYTHONPATH#/homes/pvtroshin/workspace/jaba2/binaries/src/globplot/biopython-1.50 \r
globplot.limits.file=conf/settings/GlobPlotLimits.xml\r
#cluster.iupred.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/iupred/iupred\r
iupred.parameters.file=conf/settings/IUPredParameters.xml\r
#iupred.limits.file=conf/settings/IUPredLimits.xml\r
#cluster.iupred.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/iupred/iupred\r
iupred.parameters.file=conf/settings/IUPredParameters.xml\r
#iupred.limits.file=conf/settings/IUPredLimits.xml\r
## This parameter specifies the number of CPUs to use\r
#aacon.cluster.cpunum=4\r
## This reserves a slot with CPUNUM on the cluster for the task\r
## This parameter specifies the number of CPUs to use\r
#aacon.cluster.cpunum=4\r
## This reserves a slot with CPUNUM on the cluster for the task\r