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Merge branch 'develop' of https://source.jalview.org/git/jabaws into develop
[jabaws.git]
/
conf
/
settings
/
MSAprobsParameters.xml
diff --git
a/conf/settings/MSAprobsParameters.xml
b/conf/settings/MSAprobsParameters.xml
index
6ace32c
..
cc4227e
100644
(file)
--- a/
conf/settings/MSAprobsParameters.xml
+++ b/
conf/settings/MSAprobsParameters.xml
@@
-29,7
+29,6
@@
passes of consistency transformation
\r
</description>
\r
<optionNames>-c</optionNames>
\r
passes of consistency transformation
\r
</description>
\r
<optionNames>-c</optionNames>
\r
- <optionNames>--consistency</optionNames>
\r
<furtherDetails>prog_docs/msaprobs.txt</furtherDetails>
\r
<defaultValue>2</defaultValue>
\r
<validValue>
\r
<furtherDetails>prog_docs/msaprobs.txt</furtherDetails>
\r
<defaultValue>2</defaultValue>
\r
<validValue>
\r
@@
-45,7
+44,6
@@
number of passes of iterative-refinement
\r
</description>
\r
<optionNames>-ir</optionNames>
\r
number of passes of iterative-refinement
\r
</description>
\r
<optionNames>-ir</optionNames>
\r
- <optionNames>--iterative-refinement</optionNames>
\r
<furtherDetails>prog_docs/msaprobs.txt</furtherDetails>
\r
<defaultValue>10</defaultValue>
\r
<validValue>
\r
<furtherDetails>prog_docs/msaprobs.txt</furtherDetails>
\r
<defaultValue>10</defaultValue>
\r
<validValue>
\r