- p3.addPossibleValues("BLOSUM", "PAM", "GONNET", "ID");\r
- // This attribute is required by strict schema\r
- p3.setOptionName("--AAMATRIX");\r
- p3.setRequired(true);\r
- // THIS LINE IS CAUSING EXCEPTION AS DEFAULT VALUE MUST BE DEFINED\r
- // IN WITHIN POSSIBLE VALUES\r
- p3.setDefaultValue("PAM");\r
- String com = p3.toCommand("=");\r
- assertTrue(com.startsWith("--AAMATRIX"));\r
- assertTrue(com.endsWith("PAM"));\r
- assertTrue(com.contains("="));\r
- p3.setDefaultValue("ID");\r
- com = p3.toCommand("=");\r
- assertFalse(com.endsWith("PAM"));\r
- assertFalse(com.contains("PAM"));\r
- } catch (MalformedURLException e) {\r
- e.printStackTrace();\r
- fail(e.getMessage());\r
- }\r
+ p3.addPossibleValues("BLOSUM", "PAM", "GONNET", "ID");\r
+ // This attribute is required by strict schema\r
+ p3.setOptionName("--AAMATRIX");\r
+ p3.setRequired(true);\r
+ // THIS LINE IS CAUSING EXCEPTION AS DEFAULT VALUE MUST BE DEFINED\r
+ // IN WITHIN POSSIBLE VALUES\r
+ p3.setDefaultValue("PAM");\r
+ String com = p3.toCommand("=");\r
+ assertTrue(com.startsWith("--AAMATRIX"));\r
+ assertTrue(com.endsWith("PAM"));\r
+ assertTrue(com.contains("="));\r
+ p3.setDefaultValue("ID");\r
+ com = p3.toCommand("=");\r
+ assertFalse(com.endsWith("PAM"));\r
+ assertFalse(com.contains("PAM"));\r