Get rind of NativeClusterJob interface as pretty much every jobs best to use some...

[jabaws.git] / IDEAS.txt

diff --git a/IDEAS.txt b/IDEAS.txt
index e2f9f7d..bab0292 100644 (file)
--- a/IDEAS.txt
+++ b/IDEAS.txt
@@ -1,5 +1,5 @@
 FUTURE TODO\r
-Registry for jalview WS - gives list of web services providers\r
+\r
 Registry for jalview WS - gives list of web services providers\r
  - checks the status of the web services\r
  - web service providers gives list of available WS\r
@@ -26,7 +26,17 @@ FUTURE TASKS
 Prepare HMM profile for the user alignment and call jnet - instead of jpred. \r
 JPRED REWRITING Wrap Jpred\r
 Wrap scanPS    \r
-Look at SIFTS at EBI \r
+\r
+CBS soft: \r
+Transmembrane regions\r
+Phosphorilation sites\r
+Glycozilation sites\r
+Signal P\r
+\r
+They all have SOAP WS...\r
+ \r
+CDD domains\r
+PFAM domains\r
  \r
 JPRED IMPROVEMENTS\r
 1) Make sure PSIBLAST does not generate large output (e.g. one approach is to stop on the first iteration\r
@@ -41,4 +51,9 @@ and if it is so, then use the family)
 /homes/ws-dev1/servers/Test/webapps/JalviewWS/WEB-INF/classes/vamsas/pl/bin/jpred3_submit_concise\r
 /homes/ws-dev1/servers/Test/webapps/TestJWS/WEB-INF/classes/vamsas/pl/bin/jpred3_submit_concise\r
 /homes/ws-dev1/servers/Test/webapps/JalviewWS-back/WEB-INF/classes/vamsas/pl/bin/jpred3_submit_concise\r
+\r
+\r
+JAXB - cannot serialize Maps and instance variables in Enums!\r
+Best replacement for Maps is a custom object for key->value pair and a HashSet for storing the pairs.\r
+JaxB cannot serialize instances of generic classes(?) \r
  
\ No newline at end of file