Further work on statistics display

[jabaws.git] / TODO.txt

diff --git a/TODO.txt b/TODO.txt
index f25cd0d..a0a2706 100644 (file)
--- a/TODO.txt
+++ b/TODO.txt
@@ -1,5 +1,50 @@
 TODO: \r
 \r
+add to help text: To disable a web service remove it from WEB-INF/sun-jaxws.xml descriptor\r
+\r
+add to help: VirtualBox 4.0.4 works fine with JABAWS update links \r
+\r
+rename jaba.war to jabaws.war and make sure jabaws context path is used throughout. \r
+\r
+Current stat collector has to rely on file dates! \r
+\r
+Test all WS as names from Executables were removed\r
+\r
+Add default names for input and output in every executable and use them consistently\r
+throughts (e.g. in all WS). Best of all use the same name from SceletalExectuable \r
+For statistics. \r
+\r
+FIXME: \r
+Conecting to JABAWS version 2 service\r
+09-Feb-2011 15:27:53 compbio.ws.client.Jws2Client connect\r
+INFO: Connected successfully!\r
+Exception in thread "main" java.lang.NullPointerException\r
+       at compbio.ws.client.MetadataHelper.getParametersList(MetadataHelper.java:30)\r
+       at compbio.ws.client.Jws2Client.<init>(Jws2Client.java:179)\r
+       at compbio.ws.client.Jws2Client.main(Jws2Client.java:483)\r
+       \r
+ScoreManager should output scores properly \r
+\r
+Allow empty Parameters and Preset files! \r
+\r
+Check the WS input and reject it on submission rather then of access with error message\r
+\r
+Globprot need a proper reference to bio python and sav_gol binaries -> they should be \r
+somehow taken from disembl. \r
+\r
+Add registry service to query services status\r
+\r
+Refactor web services checker to enable a programmatic access to its methods.\r
+Rename it to avoid confusion with jabaws client\r
+\r
+Finish the client\r
+\r
+Add interface for Jalview annotation \r
+Add the method to return Jalview Annotation to SequenceAnnotation IF  \r
+\r
+Develop generic Interface to return Jalview annotation for easy to add new \r
+services (?) \r
+\r
 Replace conservation.Method with server.ws.Method \r
 and try building WS. If this does not work - get rid of Method\r
 \r
@@ -10,7 +55,7 @@ integrate the above to tweak the size of the local job
 \r
 Add AACon ws\r
 Add iupred ws http://iupred.enzim.hu/\r
-Add globprot ws \r
+Add globprot ws - does not report raw scores, just regions\r
 Add ronn ws\r
 \r
 Philogeny Mrbayes + Philip\r