IUPred final touches. All test cases pass

[jabaws.git] / TODO.txt

diff --git a/TODO.txt b/TODO.txt
index 0acbf85..dbd8400 100644 (file)
--- a/TODO.txt
+++ b/TODO.txt
@@ -1,4 +1,35 @@
 TODO: \r
+Registry 1 week\r
+webservices - 1 week\r
+client - 1 week\r
+docs - 1 week\r
+\r
+Cluster stats: \r
+ +cancelled should not be reported as incomplete!\r
+ -Remove hyperlinks from tasks which workdirs were removed \r
+ -graph generation \r
+ -user documentation (do not forget how to enable follow symlinks!)\r
+ -use the same name for output for different executables\r
+ +ant task to clean up clean stat db task before packing web app\r
+ +pack web apps with stat db (NOT TESTED!)\r
+ +change input size bites\r
+ +add help info for each column in the detailed job list table\r
+ +replace default -1 with ? \r
+ +delete and re-import the database to fix clustal input staff    \r
+\r
+add to help text: To disable a web service remove it from WEB-INF/sun-jaxws.xml descriptor\r
+\r
+add to help: VirtualBox 4.0.4 works fine with JABAWS update links \r
+\r
+rename jaba.war to jabaws.war and make sure jabaws context path is used throughout. \r
+\r
+Current stat collector has to rely on file dates! \r
+\r
+Test all WS as names from Executables were removed\r
+\r
+Add default names for input and output in every executable and use them consistently\r
+throughts (e.g. in all WS). Best of all use the same name from SceletalExectuable \r
+For statistics. \r
 \r
 FIXME: \r
 Conecting to JABAWS version 2 service\r
@@ -9,19 +40,19 @@ Exception in thread "main" java.lang.NullPointerException
        at compbio.ws.client.Jws2Client.<init>(Jws2Client.java:179)\r
        at compbio.ws.client.Jws2Client.main(Jws2Client.java:483)\r
        \r
-       \r
-Need to pass predicted ranges to the client too - some are not straightforward to devise. \r
-This may require changes to SequenceAnnotation\r
+ScoreManager should output scores properly \r
+\r
+Allow empty Parameters and Preset files! \r
+\r
+Check the WS input and reject it on submission rather then of access with error message\r
 \r
 Globprot need a proper reference to bio python and sav_gol binaries -> they should be \r
 somehow taken from disembl. \r
 \r
-Add registry service to query services status\r
-\r
-Refactor web services checker to enable a programmatic access to its methods.\r
-Rename it to avoid confusion with jabaws client\r
++Add registry service to query services status\r
 \r
-Finish the client\r
++Refactor web services checker to enable a programmatic access to its methods.\r
++Finish the client\r
 \r
 Add interface for Jalview annotation \r
 Add the method to return Jalview Annotation to SequenceAnnotation IF  \r