Add GLprobs and MSAprobs to binaries

[jabaws.git] / binaries / src / GLProbs-1.0 / MSAClusterTree.h

diff --git a/binaries/src/GLProbs-1.0/MSAClusterTree.h b/binaries/src/GLProbs-1.0/MSAClusterTree.h
new file mode 100644 (file)
index 0000000..30bce05
--- /dev/null
+++ b/binaries/src/GLProbs-1.0/MSAClusterTree.h
@@ -0,0 +1,27 @@
+/***********************************************
+ * # Copyright 2009-2010. Liu Yongchao
+ * # Contact: Liu Yongchao, School of Computer Engineering,
+ * #                    Nanyang Technological University.
+ * # Emails:    liuy0039@ntu.edu.sg; nkcslyc@hotmail.com
+ * #
+ * # GPL version 3.0 applies.
+ * #
+ * ************************************************/
+
+#ifndef _MSA_CLUSTER_TREE_H
+#define _MSA_CLUSTER_TREE_H
+
+#include "MSAGuideTree.h"
+
+class MSAClusterTree: public MSAGuideTree {
+public:
+       MSAClusterTree(MSA* msa, VVF& distMatrix, int numSeqs);
+       ~MSAClusterTree();
+
+       //construct the cluster tree
+       void create();
+private:
+       //generate the cluster tree
+       void generateClusterTree();
+};
+#endif