Add GLprobs and MSAprobs to binaries

[jabaws.git] / binaries / src / MSAProbs-0.9.7 / MSAProbs / MSADef.h

diff --git a/binaries/src/MSAProbs-0.9.7/MSAProbs/MSADef.h b/binaries/src/MSAProbs-0.9.7/MSAProbs/MSADef.h
new file mode 100644 (file)
index 0000000..6a3d178
--- /dev/null
+++ b/binaries/src/MSAProbs-0.9.7/MSAProbs/MSADef.h
@@ -0,0 +1,26 @@
+#ifndef _MSA_DEF_H
+#define _MSA_DEF_H
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <float.h>
+#include <math.h>
+
+#ifdef _OPENMP
+#include <omp.h>
+#endif
+
+//maximum number
+#define MAX_INT_NUM                            0x7FFFFFFF
+#define MAX_FLOAT_NUM                  FLT_MAX
+#define INT_MULTIPLY                   1000
+
+#define SUBMATRIX_INT_SCALE            100
+
+//a tree node is a leaf or a node
+enum {
+       NONE, NODE, LEAF
+};
+
+#endif
+