--- /dev/null
+This file contains any messages produced by compilers while
+running configure, to aid debugging if configure makes a mistake.
+
+It was created by RNAforester configure 1.5, which was
+generated by GNU Autoconf 2.68. Invocation command line was
+
+ $ ./configure --disable-option-checking --prefix=/usr/local --cache-file=/dev/null --srcdir=.
+
+## --------- ##
+## Platform. ##
+## --------- ##
+
+hostname = ningal.cluster.lifesci.dundee.ac.uk
+uname -m = x86_64
+uname -r = 2.6.32-642.6.1.el6.x86_64
+uname -s = Linux
+uname -v = #1 SMP Wed Oct 5 00:36:12 UTC 2016
+
+/usr/bin/uname -p = unknown
+/bin/uname -X = unknown
+
+/bin/arch = x86_64
+/usr/bin/arch -k = unknown
+/usr/convex/getsysinfo = unknown
+/usr/bin/hostinfo = unknown
+/bin/machine = unknown
+/usr/bin/oslevel = unknown
+/bin/universe = unknown
+
+PATH: /gridware/sge/bin/lx-amd64
+PATH: /homes/fmmarquesmadeira/.local/anaconda/envs/python3/bin
+PATH: /gridware/sge/bin/lx-amd64
+PATH: /usr/lib64/qt-3.3/bin
+PATH: /usr/local/bin
+PATH: /bin
+PATH: /usr/bin
+PATH: /usr/local/sbin
+PATH: /usr/sbin
+PATH: /sbin
+PATH: /opt/dell/srvadmin/bin
+PATH: /homes/fmmarquesmadeira/.local/anaconda/bin
+PATH: /homes/fmmarquesmadeira/.local/bin/stamp4.4.2/bin/linux
+PATH: /homes/fmmarquesmadeira/.local/bin/mustang3.2.2/bin
+PATH: /homes/fmmarquesmadeira/.local/bin/mafft7.273/bin
+PATH: /homes/fmmarquesmadeira/.local/bin/foldx_Linux/bin
+PATH: /homes/fmmarquesmadeira/NOBACK/lib/oxbench_1_3//bin
+PATH: /homes/fmmarquesmadeira/.local/bin/Intellij/bin
+PATH: /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/tcoffee/t_coffee_source
+
+
+## ----------- ##
+## Core tests. ##
+## ----------- ##
+
+configure:2187: checking whether make supports nested variables
+configure:2204: result: yes
+configure:2260: checking for a BSD-compatible install
+configure:2328: result: /usr/bin/install -c
+configure:2339: checking whether build environment is sane
+configure:2389: result: yes
+configure:2530: checking for a thread-safe mkdir -p
+configure:2569: result: /bin/mkdir -p
+configure:2582: checking for gawk
+configure:2598: found /bin/gawk
+configure:2609: result: gawk
+configure:2620: checking whether make sets $(MAKE)
+configure:2642: result: yes
+configure:2784: checking for g++
+configure:2800: found /usr/bin/g++
+configure:2811: result: g++
+configure:2838: checking for C++ compiler version
+configure:2847: g++ --version >&5
+g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17)
+Copyright (C) 2010 Free Software Foundation, Inc.
+This is free software; see the source for copying conditions. There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+
+configure:2858: $? = 0
+configure:2847: g++ -v >&5
+Using built-in specs.
+Target: x86_64-redhat-linux
+Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
+Thread model: posix
+gcc version 4.4.7 20120313 (Red Hat 4.4.7-17) (GCC)
+configure:2858: $? = 0
+configure:2847: g++ -V >&5
+g++: '-V' option must have argument
+configure:2858: $? = 1
+configure:2847: g++ -qversion >&5
+g++: unrecognized option '-qversion'
+g++: no input files
+configure:2858: $? = 1
+configure:2878: checking whether the C++ compiler works
+configure:2900: g++ conftest.cpp >&5
+configure:2904: $? = 0
+configure:2952: result: yes
+configure:2955: checking for C++ compiler default output file name
+configure:2957: result: a.out
+configure:2963: checking for suffix of executables
+configure:2970: g++ -o conftest conftest.cpp >&5
+configure:2974: $? = 0
+configure:2996: result:
+configure:3018: checking whether we are cross compiling
+configure:3026: g++ -o conftest conftest.cpp >&5
+configure:3030: $? = 0
+configure:3037: ./conftest
+configure:3041: $? = 0
+configure:3056: result: no
+configure:3061: checking for suffix of object files
+configure:3083: g++ -c conftest.cpp >&5
+configure:3087: $? = 0
+configure:3108: result: o
+configure:3112: checking whether we are using the GNU C++ compiler
+configure:3131: g++ -c conftest.cpp >&5
+configure:3131: $? = 0
+configure:3140: result: yes
+configure:3149: checking whether g++ accepts -g
+configure:3169: g++ -c -g conftest.cpp >&5
+configure:3169: $? = 0
+configure:3210: result: yes
+configure:3244: checking for style of include used by make
+configure:3272: result: GNU
+configure:3298: checking dependency style of g++
+configure:3409: result: gcc3
+configure:3472: checking for gcc
+configure:3488: found /usr/bin/gcc
+configure:3499: result: gcc
+configure:3728: checking for C compiler version
+configure:3737: gcc --version >&5
+gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17)
+Copyright (C) 2010 Free Software Foundation, Inc.
+This is free software; see the source for copying conditions. There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+
+configure:3748: $? = 0
+configure:3737: gcc -v >&5
+Using built-in specs.
+Target: x86_64-redhat-linux
+Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
+Thread model: posix
+gcc version 4.4.7 20120313 (Red Hat 4.4.7-17) (GCC)
+configure:3748: $? = 0
+configure:3737: gcc -V >&5
+gcc: '-V' option must have argument
+configure:3748: $? = 1
+configure:3737: gcc -qversion >&5
+gcc: unrecognized option '-qversion'
+gcc: no input files
+configure:3748: $? = 1
+configure:3752: checking whether we are using the GNU C compiler
+configure:3771: gcc -c conftest.c >&5
+configure:3771: $? = 0
+configure:3780: result: yes
+configure:3789: checking whether gcc accepts -g
+configure:3809: gcc -c -g conftest.c >&5
+configure:3809: $? = 0
+configure:3850: result: yes
+configure:3867: checking for gcc option to accept ISO C89
+configure:3931: gcc -c -g -O2 conftest.c >&5
+configure:3931: $? = 0
+configure:3944: result: none needed
+configure:3966: checking dependency style of gcc
+configure:4077: result: gcc3
+configure:4109: checking for g++ option to support OpenMP
+configure:4124: g++ -o conftest -g -O2 conftest.cpp >&5
+conftest.cpp:13: error: 'choke' does not name a type
+In file included from conftest.cpp:15:
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:38: error: expected constructor, destructor, or type conversion before ';' token
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:76: error: variable or field 'omp_init_lock' declared void
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:76: error: 'omp_lock_t' was not declared in this scope
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:76: error: expected primary-expression before ')' token
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:77: error: variable or field 'omp_destroy_lock' declared void
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:77: error: 'omp_lock_t' was not declared in this scope
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:77: error: expected primary-expression before ')' token
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:78: error: variable or field 'omp_set_lock' declared void
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:78: error: 'omp_lock_t' was not declared in this scope
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:78: error: expected primary-expression before ')' token
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:79: error: variable or field 'omp_unset_lock' declared void
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:79: error: 'omp_lock_t' was not declared in this scope
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:79: error: expected primary-expression before ')' token
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:80: error: 'omp_lock_t' was not declared in this scope
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:80: error: expected primary-expression before ')' token
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:80: error: expected ',' or ';' before 'throw'
+configure:4124: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "RNAforester"
+| #define PACKAGE_TARNAME "RNAforester"
+| #define PACKAGE_VERSION "1.5"
+| #define PACKAGE_STRING "RNAforester 1.5"
+| #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
+| #define PACKAGE_URL ""
+| #define PACKAGE "RNAforester"
+| #define VERSION "1.5"
+| /* end confdefs.h. */
+|
+| #ifndef _OPENMP
+| choke me
+| #endif
+| #include <omp.h>
+| int main () { return omp_get_num_threads (); }
+|
+configure:4141: g++ -o conftest -g -O2 -fopenmp conftest.cpp >&5
+configure:4141: $? = 0
+configure:4155: result: -fopenmp
+configure:4180: result: using (to be built) libRNA.a in ../lib
+configure:4304: checking how to run the C++ preprocessor
+configure:4331: g++ -E -Ig2-0.70/src/ conftest.cpp
+configure:4331: $? = 0
+configure:4345: g++ -E -Ig2-0.70/src/ conftest.cpp
+conftest.cpp:12:28: error: ac_nonexistent.h: No such file or directory
+configure:4345: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "RNAforester"
+| #define PACKAGE_TARNAME "RNAforester"
+| #define PACKAGE_VERSION "1.5"
+| #define PACKAGE_STRING "RNAforester 1.5"
+| #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
+| #define PACKAGE_URL ""
+| #define PACKAGE "RNAforester"
+| #define VERSION "1.5"
+| #define HAVE_LIBRNA 1
+| /* end confdefs.h. */
+| #include <ac_nonexistent.h>
+configure:4370: result: g++ -E
+configure:4390: g++ -E -Ig2-0.70/src/ conftest.cpp
+configure:4390: $? = 0
+configure:4404: g++ -E -Ig2-0.70/src/ conftest.cpp
+conftest.cpp:12:28: error: ac_nonexistent.h: No such file or directory
+configure:4404: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "RNAforester"
+| #define PACKAGE_TARNAME "RNAforester"
+| #define PACKAGE_VERSION "1.5"
+| #define PACKAGE_STRING "RNAforester 1.5"
+| #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
+| #define PACKAGE_URL ""
+| #define PACKAGE "RNAforester"
+| #define VERSION "1.5"
+| #define HAVE_LIBRNA 1
+| /* end confdefs.h. */
+| #include <ac_nonexistent.h>
+configure:4433: checking for grep that handles long lines and -e
+configure:4491: result: /bin/grep
+configure:4496: checking for egrep
+configure:4558: result: /bin/grep -E
+configure:4563: checking for ANSI C header files
+configure:4583: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4583: $? = 0
+configure:4656: g++ -o conftest -g -O2 -Ig2-0.70/src/ -L../../lib -L../../ViennaRNA -fopenmp conftest.cpp -lRNA >&5
+/usr/bin/ld: cannot find -lRNA
+collect2: ld returned 1 exit status
+configure:4656: $? = 1
+configure: program exited with status 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "RNAforester"
+| #define PACKAGE_TARNAME "RNAforester"
+| #define PACKAGE_VERSION "1.5"
+| #define PACKAGE_STRING "RNAforester 1.5"
+| #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
+| #define PACKAGE_URL ""
+| #define PACKAGE "RNAforester"
+| #define VERSION "1.5"
+| #define HAVE_LIBRNA 1
+| /* end confdefs.h. */
+| #include <ctype.h>
+| #include <stdlib.h>
+| #if ((' ' & 0x0FF) == 0x020)
+| # define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
+| # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
+| #else
+| # define ISLOWER(c) (('a' <= (c) && (c) <= 'i') || ('j' <= (c) && (c) <= 'r') || ('s' <= (c) && (c) <= 'z'))
+| # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c))
+| #endif
+|
+| #define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
+| int
+| main ()
+| {
+| int i;
+| for (i = 0; i < 256; i++)
+| if (XOR (islower (i), ISLOWER (i))
+| || toupper (i) != TOUPPER (i))
+| return 2;
+| return 0;
+| }
+configure:4667: result: no
+configure:4680: checking for sys/types.h
+configure:4680: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4680: $? = 0
+configure:4680: result: yes
+configure:4680: checking for sys/stat.h
+configure:4680: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4680: $? = 0
+configure:4680: result: yes
+configure:4680: checking for stdlib.h
+configure:4680: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4680: $? = 0
+configure:4680: result: yes
+configure:4680: checking for string.h
+configure:4680: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4680: $? = 0
+configure:4680: result: yes
+configure:4680: checking for memory.h
+configure:4680: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4680: $? = 0
+configure:4680: result: yes
+configure:4680: checking for strings.h
+configure:4680: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4680: $? = 0
+configure:4680: result: yes
+configure:4680: checking for inttypes.h
+configure:4680: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4680: $? = 0
+configure:4680: result: yes
+configure:4680: checking for stdint.h
+configure:4680: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4680: $? = 0
+configure:4680: result: yes
+configure:4680: checking for unistd.h
+configure:4680: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4680: $? = 0
+configure:4680: result: yes
+configure:4692: checking g2.h usability
+configure:4692: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4692: $? = 0
+configure:4692: result: yes
+configure:4692: checking g2.h presence
+configure:4692: g++ -E -Ig2-0.70/src/ conftest.cpp
+configure:4692: $? = 0
+configure:4692: result: yes
+configure:4692: checking for g2.h
+configure:4692: result: yes
+configure:4704: checking for an ANSI C-conforming const
+configure:4769: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4769: $? = 0
+configure:4776: result: yes
+configure:4784: checking for inline
+configure:4800: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4800: $? = 0
+configure:4808: result: inline
+configure:4826: checking for size_t
+configure:4826: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+configure:4826: $? = 0
+configure:4826: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5
+conftest.cpp: In function 'int main()':
+conftest.cpp:58: error: expected primary-expression before ')' token
+configure:4826: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "RNAforester"
+| #define PACKAGE_TARNAME "RNAforester"
+| #define PACKAGE_VERSION "1.5"
+| #define PACKAGE_STRING "RNAforester 1.5"
+| #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
+| #define PACKAGE_URL ""
+| #define PACKAGE "RNAforester"
+| #define VERSION "1.5"
+| #define HAVE_LIBRNA 1
+| #define HAVE_SYS_TYPES_H 1
+| #define HAVE_SYS_STAT_H 1
+| #define HAVE_STDLIB_H 1
+| #define HAVE_STRING_H 1
+| #define HAVE_MEMORY_H 1
+| #define HAVE_STRINGS_H 1
+| #define HAVE_INTTYPES_H 1
+| #define HAVE_STDINT_H 1
+| #define HAVE_UNISTD_H 1
+| #define HAVE_LIBG2 1
+| /* end confdefs.h. */
+| #include <stdio.h>
+| #ifdef HAVE_SYS_TYPES_H
+| # include <sys/types.h>
+| #endif
+| #ifdef HAVE_SYS_STAT_H
+| # include <sys/stat.h>
+| #endif
+| #ifdef STDC_HEADERS
+| # include <stdlib.h>
+| # include <stddef.h>
+| #else
+| # ifdef HAVE_STDLIB_H
+| # include <stdlib.h>
+| # endif
+| #endif
+| #ifdef HAVE_STRING_H
+| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
+| # include <memory.h>
+| # endif
+| # include <string.h>
+| #endif
+| #ifdef HAVE_STRINGS_H
+| # include <strings.h>
+| #endif
+| #ifdef HAVE_INTTYPES_H
+| # include <inttypes.h>
+| #endif
+| #ifdef HAVE_STDINT_H
+| # include <stdint.h>
+| #endif
+| #ifdef HAVE_UNISTD_H
+| # include <unistd.h>
+| #endif
+| int
+| main ()
+| {
+| if (sizeof ((size_t)))
+| return 0;
+| ;
+| return 0;
+| }
+configure:4826: result: yes
+configure:4991: creating ./config.status
+
+## ---------------------- ##
+## Running config.status. ##
+## ---------------------- ##
+
+This file was extended by RNAforester config.status 1.5, which was
+generated by GNU Autoconf 2.68. Invocation command line was
+
+ CONFIG_FILES =
+ CONFIG_HEADERS =
+ CONFIG_LINKS =
+ CONFIG_COMMANDS =
+ $ ./config.status
+
+on ningal.cluster.lifesci.dundee.ac.uk
+
+config.status:875: creating Makefile
+config.status:875: creating src/Makefile
+config.status:875: creating man/Makefile
+config.status:875: creating config.h
+config.status:1104: executing depfiles commands
+configure:6389: === configuring in g2-0.70 (/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/RNAforester/g2-0.70)
+configure:6452: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' --cache-file=/dev/null --srcdir=.
+
+## ---------------- ##
+## Cache variables. ##
+## ---------------- ##
+
+ac_cv_c_compiler_gnu=yes
+ac_cv_c_const=yes
+ac_cv_c_inline=inline
+ac_cv_cxx_compiler_gnu=yes
+ac_cv_env_CCC_set=
+ac_cv_env_CCC_value=
+ac_cv_env_CC_set=
+ac_cv_env_CC_value=
+ac_cv_env_CFLAGS_set=
+ac_cv_env_CFLAGS_value=
+ac_cv_env_CPPFLAGS_set=
+ac_cv_env_CPPFLAGS_value=
+ac_cv_env_CXXCPP_set=
+ac_cv_env_CXXCPP_value=
+ac_cv_env_CXXFLAGS_set=
+ac_cv_env_CXXFLAGS_value=
+ac_cv_env_CXX_set=
+ac_cv_env_CXX_value=
+ac_cv_env_LDFLAGS_set=
+ac_cv_env_LDFLAGS_value=
+ac_cv_env_LIBS_set=
+ac_cv_env_LIBS_value=
+ac_cv_env_build_alias_set=
+ac_cv_env_build_alias_value=
+ac_cv_env_host_alias_set=
+ac_cv_env_host_alias_value=
+ac_cv_env_target_alias_set=
+ac_cv_env_target_alias_value=
+ac_cv_header_g2_h=yes
+ac_cv_header_inttypes_h=yes
+ac_cv_header_memory_h=yes
+ac_cv_header_stdc=no
+ac_cv_header_stdint_h=yes
+ac_cv_header_stdlib_h=yes
+ac_cv_header_string_h=yes
+ac_cv_header_strings_h=yes
+ac_cv_header_sys_stat_h=yes
+ac_cv_header_sys_types_h=yes
+ac_cv_header_unistd_h=yes
+ac_cv_objext=o
+ac_cv_path_EGREP='/bin/grep -E'
+ac_cv_path_GREP=/bin/grep
+ac_cv_path_install='/usr/bin/install -c'
+ac_cv_path_mkdir=/bin/mkdir
+ac_cv_prog_AWK=gawk
+ac_cv_prog_CXXCPP='g++ -E'
+ac_cv_prog_ac_ct_CC=gcc
+ac_cv_prog_ac_ct_CXX=g++
+ac_cv_prog_cc_c89=
+ac_cv_prog_cc_g=yes
+ac_cv_prog_cxx_g=yes
+ac_cv_prog_cxx_openmp=-fopenmp
+ac_cv_prog_make_make_set=yes
+ac_cv_type_size_t=yes
+am_cv_CC_dependencies_compiler_type=gcc3
+am_cv_CXX_dependencies_compiler_type=gcc3
+am_cv_make_support_nested_variables=yes
+
+## ----------------- ##
+## Output variables. ##
+## ----------------- ##
+
+ACLOCAL='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/RNAforester/missing --run aclocal-1.11'
+AMDEPBACKSLASH='\'
+AMDEP_FALSE='#'
+AMDEP_TRUE=''
+AMTAR='$${TAR-tar}'
+AM_BACKSLASH='\'
+AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
+AM_DEFAULT_VERBOSITY='0'
+AM_V='$(V)'
+AUTOCONF='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/RNAforester/missing --run autoconf'
+AUTOHEADER='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/RNAforester/missing --run autoheader'
+AUTOMAKE='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/RNAforester/missing --run automake-1.11'
+AWK='gawk'
+CC='gcc'
+CCDEPMODE='depmode=gcc3'
+CFLAGS='-g -O2'
+CPPFLAGS=' -I../g2-0.70/include/ '
+CXX='g++'
+CXXCPP='g++ -E'
+CXXDEPMODE='depmode=gcc3'
+CXXFLAGS='-g -O2'
+CYGPATH_W='echo'
+DEFS='-DHAVE_CONFIG_H'
+DEPDIR='.deps'
+ECHO_C=''
+ECHO_N='-n'
+ECHO_T=''
+EGREP='/bin/grep -E'
+EXEEXT=''
+GREP='/bin/grep'
+INSTALL_DATA='${INSTALL} -m 644'
+INSTALL_PROGRAM='${INSTALL}'
+INSTALL_SCRIPT='${INSTALL}'
+INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
+LDFLAGS='-L../g2-0.70 -L../../lib -L../../ViennaRNA -fopenmp'
+LIBOBJS=''
+LIBS='-lg2 -lRNA '
+LTLIBOBJS=''
+MAKEINFO='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/RNAforester/missing --run makeinfo'
+MKDIR_P='/bin/mkdir -p'
+OBJEXT='o'
+OPENMP_CXXFLAGS='-fopenmp'
+PACKAGE='RNAforester'
+PACKAGE_BUGREPORT='mhoechsm@techfak.uni-bielefeld.de'
+PACKAGE_NAME='RNAforester'
+PACKAGE_STRING='RNAforester 1.5'
+PACKAGE_TARNAME='RNAforester'
+PACKAGE_URL=''
+PACKAGE_VERSION='1.5'
+PATH_SEPARATOR=':'
+SET_MAKE=''
+SHELL='/bin/sh'
+STRIP=''
+VERSION='1.5'
+ac_ct_CC='gcc'
+ac_ct_CXX='g++'
+am__EXEEXT_FALSE=''
+am__EXEEXT_TRUE='#'
+am__fastdepCC_FALSE='#'
+am__fastdepCC_TRUE=''
+am__fastdepCXX_FALSE='#'
+am__fastdepCXX_TRUE=''
+am__include='include'
+am__isrc=''
+am__leading_dot='.'
+am__nodep='_no'
+am__quote=''
+am__tar='$${TAR-tar} chof - "$$tardir"'
+am__untar='$${TAR-tar} xf -'
+bindir='${exec_prefix}/bin'
+build_alias=''
+datadir='${datarootdir}'
+datarootdir='${prefix}/share'
+docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
+dvidir='${docdir}'
+exec_prefix='${prefix}'
+host_alias=''
+htmldir='${docdir}'
+includedir='${prefix}/include'
+infodir='${datarootdir}/info'
+install_sh='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/RNAforester/install-sh'
+libdir='${exec_prefix}/lib'
+libexecdir='${exec_prefix}/libexec'
+localedir='${datarootdir}/locale'
+localstatedir='${prefix}/var'
+mandir='${datarootdir}/man'
+mkdir_p='/bin/mkdir -p'
+oldincludedir='/usr/include'
+pdfdir='${docdir}'
+prefix='/usr/local'
+program_transform_name='s,x,x,'
+psdir='${docdir}'
+sbindir='${exec_prefix}/sbin'
+sharedstatedir='${prefix}/com'
+subdirs=' g2-0.70'
+sysconfdir='${prefix}/etc'
+target_alias=''
+
+## ----------- ##
+## confdefs.h. ##
+## ----------- ##
+
+/* confdefs.h */
+#define PACKAGE_NAME "RNAforester"
+#define PACKAGE_TARNAME "RNAforester"
+#define PACKAGE_VERSION "1.5"
+#define PACKAGE_STRING "RNAforester 1.5"
+#define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
+#define PACKAGE_URL ""
+#define PACKAGE "RNAforester"
+#define VERSION "1.5"
+#define HAVE_LIBRNA 1
+#define HAVE_SYS_TYPES_H 1
+#define HAVE_SYS_STAT_H 1
+#define HAVE_STDLIB_H 1
+#define HAVE_STRING_H 1
+#define HAVE_MEMORY_H 1
+#define HAVE_STRINGS_H 1
+#define HAVE_INTTYPES_H 1
+#define HAVE_STDINT_H 1
+#define HAVE_UNISTD_H 1
+#define HAVE_LIBG2 1
+
+configure: exit 0
git://source.jalview.org / jabaws.git / blobdiff