--- /dev/null
+This file contains any messages produced by compilers while
+running configure, to aid debugging if configure makes a mistake.
+
+It was created by ViennaRNA configure 2.1.2, which was
+generated by GNU Autoconf 2.68. Invocation command line was
+
+ $ ./configure
+
+## --------- ##
+## Platform. ##
+## --------- ##
+
+hostname = ningal.cluster.lifesci.dundee.ac.uk
+uname -m = x86_64
+uname -r = 2.6.32-642.6.1.el6.x86_64
+uname -s = Linux
+uname -v = #1 SMP Wed Oct 5 00:36:12 UTC 2016
+
+/usr/bin/uname -p = unknown
+/bin/uname -X = unknown
+
+/bin/arch = x86_64
+/usr/bin/arch -k = unknown
+/usr/convex/getsysinfo = unknown
+/usr/bin/hostinfo = unknown
+/bin/machine = unknown
+/usr/bin/oslevel = unknown
+/bin/universe = unknown
+
+PATH: /gridware/sge/bin/lx-amd64
+PATH: /homes/fmmarquesmadeira/.local/anaconda/envs/python3/bin
+PATH: /gridware/sge/bin/lx-amd64
+PATH: /usr/lib64/qt-3.3/bin
+PATH: /usr/local/bin
+PATH: /bin
+PATH: /usr/bin
+PATH: /usr/local/sbin
+PATH: /usr/sbin
+PATH: /sbin
+PATH: /opt/dell/srvadmin/bin
+PATH: /homes/fmmarquesmadeira/.local/anaconda/bin
+PATH: /homes/fmmarquesmadeira/.local/bin/stamp4.4.2/bin/linux
+PATH: /homes/fmmarquesmadeira/.local/bin/mustang3.2.2/bin
+PATH: /homes/fmmarquesmadeira/.local/bin/mafft7.273/bin
+PATH: /homes/fmmarquesmadeira/.local/bin/foldx_Linux/bin
+PATH: /homes/fmmarquesmadeira/NOBACK/lib/oxbench_1_3//bin
+PATH: /homes/fmmarquesmadeira/.local/bin/Intellij/bin
+PATH: /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/tcoffee/t_coffee_source
+
+
+## ----------- ##
+## Core tests. ##
+## ----------- ##
+
+configure:2472: checking whether make supports nested variables
+configure:2489: result: yes
+configure:2516: checking for a BSD-compatible install
+configure:2584: result: /usr/bin/install -c
+configure:2595: checking whether build environment is sane
+configure:2645: result: yes
+configure:2786: checking for a thread-safe mkdir -p
+configure:2825: result: /bin/mkdir -p
+configure:2838: checking for gawk
+configure:2854: found /bin/gawk
+configure:2865: result: gawk
+configure:2876: checking whether make sets $(MAKE)
+configure:2898: result: yes
+configure:2982: checking if malloc debugging is wanted
+configure:3000: result: no
+configure:3016: checking build system type
+configure:3030: result: x86_64-unknown-linux-gnu
+configure:3050: checking host system type
+configure:3063: result: x86_64-unknown-linux-gnu
+configure:3142: checking for g++
+configure:3158: found /usr/bin/g++
+configure:3169: result: g++
+configure:3196: checking for C++ compiler version
+configure:3205: g++ --version >&5
+g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17)
+Copyright (C) 2010 Free Software Foundation, Inc.
+This is free software; see the source for copying conditions. There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+
+configure:3216: $? = 0
+configure:3205: g++ -v >&5
+Using built-in specs.
+Target: x86_64-redhat-linux
+Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
+Thread model: posix
+gcc version 4.4.7 20120313 (Red Hat 4.4.7-17) (GCC)
+configure:3216: $? = 0
+configure:3205: g++ -V >&5
+g++: '-V' option must have argument
+configure:3216: $? = 1
+configure:3205: g++ -qversion >&5
+g++: unrecognized option '-qversion'
+g++: no input files
+configure:3216: $? = 1
+configure:3236: checking whether the C++ compiler works
+configure:3258: g++ conftest.cpp >&5
+configure:3262: $? = 0
+configure:3310: result: yes
+configure:3313: checking for C++ compiler default output file name
+configure:3315: result: a.out
+configure:3321: checking for suffix of executables
+configure:3328: g++ -o conftest conftest.cpp >&5
+configure:3332: $? = 0
+configure:3354: result:
+configure:3376: checking whether we are cross compiling
+configure:3384: g++ -o conftest conftest.cpp >&5
+configure:3388: $? = 0
+configure:3395: ./conftest
+configure:3399: $? = 0
+configure:3414: result: no
+configure:3419: checking for suffix of object files
+configure:3441: g++ -c conftest.cpp >&5
+configure:3445: $? = 0
+configure:3466: result: o
+configure:3470: checking whether we are using the GNU C++ compiler
+configure:3489: g++ -c conftest.cpp >&5
+configure:3489: $? = 0
+configure:3498: result: yes
+configure:3507: checking whether g++ accepts -g
+configure:3527: g++ -c -g conftest.cpp >&5
+configure:3527: $? = 0
+configure:3568: result: yes
+configure:3602: checking for style of include used by make
+configure:3630: result: GNU
+configure:3656: checking dependency style of g++
+configure:3767: result: gcc3
+configure:3787: checking how to run the C++ preprocessor
+configure:3814: g++ -E conftest.cpp
+configure:3814: $? = 0
+configure:3828: g++ -E conftest.cpp
+conftest.cpp:11:28: error: ac_nonexistent.h: No such file or directory
+configure:3828: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "ViennaRNA"
+| #define PACKAGE_TARNAME "ViennaRNA"
+| #define PACKAGE_VERSION "2.1.2"
+| #define PACKAGE_STRING "ViennaRNA 2.1.2"
+| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
+| #define PACKAGE_URL "http://www.tbi.univie.ac.a/~ivo/RNA"
+| #define PACKAGE "ViennaRNA"
+| #define VERSION "2.1.2"
+| /* end confdefs.h. */
+| #include <ac_nonexistent.h>
+configure:3853: result: g++ -E
+configure:3873: g++ -E conftest.cpp
+configure:3873: $? = 0
+configure:3887: g++ -E conftest.cpp
+conftest.cpp:11:28: error: ac_nonexistent.h: No such file or directory
+configure:3887: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "ViennaRNA"
+| #define PACKAGE_TARNAME "ViennaRNA"
+| #define PACKAGE_VERSION "2.1.2"
+| #define PACKAGE_STRING "ViennaRNA 2.1.2"
+| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
+| #define PACKAGE_URL "http://www.tbi.univie.ac.a/~ivo/RNA"
+| #define PACKAGE "ViennaRNA"
+| #define VERSION "2.1.2"
+| /* end confdefs.h. */
+| #include <ac_nonexistent.h>
+configure:3963: checking for gcc
+configure:3979: found /usr/bin/gcc
+configure:3990: result: gcc
+configure:4219: checking for C compiler version
+configure:4228: gcc --version >&5
+gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17)
+Copyright (C) 2010 Free Software Foundation, Inc.
+This is free software; see the source for copying conditions. There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+
+configure:4239: $? = 0
+configure:4228: gcc -v >&5
+Using built-in specs.
+Target: x86_64-redhat-linux
+Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
+Thread model: posix
+gcc version 4.4.7 20120313 (Red Hat 4.4.7-17) (GCC)
+configure:4239: $? = 0
+configure:4228: gcc -V >&5
+gcc: '-V' option must have argument
+configure:4239: $? = 1
+configure:4228: gcc -qversion >&5
+gcc: unrecognized option '-qversion'
+gcc: no input files
+configure:4239: $? = 1
+configure:4243: checking whether we are using the GNU C compiler
+configure:4262: gcc -c conftest.c >&5
+configure:4262: $? = 0
+configure:4271: result: yes
+configure:4280: checking whether gcc accepts -g
+configure:4300: gcc -c -g conftest.c >&5
+configure:4300: $? = 0
+configure:4341: result: yes
+configure:4358: checking for gcc option to accept ISO C89
+configure:4422: gcc -c -g -O2 conftest.c >&5
+configure:4422: $? = 0
+configure:4435: result: none needed
+configure:4457: checking dependency style of gcc
+configure:4568: result: gcc3
+configure:4588: checking how to run the C preprocessor
+configure:4619: gcc -E conftest.c
+configure:4619: $? = 0
+configure:4633: gcc -E conftest.c
+conftest.c:11:28: error: ac_nonexistent.h: No such file or directory
+configure:4633: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "ViennaRNA"
+| #define PACKAGE_TARNAME "ViennaRNA"
+| #define PACKAGE_VERSION "2.1.2"
+| #define PACKAGE_STRING "ViennaRNA 2.1.2"
+| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
+| #define PACKAGE_URL "http://www.tbi.univie.ac.a/~ivo/RNA"
+| #define PACKAGE "ViennaRNA"
+| #define VERSION "2.1.2"
+| /* end confdefs.h. */
+| #include <ac_nonexistent.h>
+configure:4658: result: gcc -E
+configure:4678: gcc -E conftest.c
+configure:4678: $? = 0
+configure:4692: gcc -E conftest.c
+conftest.c:11:28: error: ac_nonexistent.h: No such file or directory
+configure:4692: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "ViennaRNA"
+| #define PACKAGE_TARNAME "ViennaRNA"
+| #define PACKAGE_VERSION "2.1.2"
+| #define PACKAGE_STRING "ViennaRNA 2.1.2"
+| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
+| #define PACKAGE_URL "http://www.tbi.univie.ac.a/~ivo/RNA"
+| #define PACKAGE "ViennaRNA"
+| #define VERSION "2.1.2"
+| /* end confdefs.h. */
+| #include <ac_nonexistent.h>
+configure:4723: checking whether gcc accepts -fpic
+configure:4739: gcc -c -fpic conftest.c >&5
+configure:4739: $? = 0
+configure:4746: result: yes
+configure:4810: checking for ranlib
+configure:4826: found /usr/bin/ranlib
+configure:4837: result: ranlib
+configure:4859: checking whether make sets $(MAKE)
+configure:4881: result: yes
+configure:4890: checking for grep that handles long lines and -e
+configure:4948: result: /bin/grep
+configure:4954: checking whether gcc and cc understand -c and -o together
+configure:4985: gcc -c conftest.c -o conftest2.o >&5
+configure:4989: $? = 0
+configure:4995: gcc -c conftest.c -o conftest2.o >&5
+configure:4999: $? = 0
+configure:5010: cc -c conftest.c >&5
+configure:5014: $? = 0
+configure:5022: cc -c conftest.c -o conftest2.o >&5
+configure:5026: $? = 0
+configure:5032: cc -c conftest.c -o conftest2.o >&5
+configure:5036: $? = 0
+configure:5054: result: yes
+configure:5090: checking for gcc option to support OpenMP
+configure:5105: gcc -o conftest -g -O2 conftest.c >&5
+conftest.c:14: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me'
+In file included from conftest.c:16:
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:76: error: expected ')' before '*' token
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:77: error: expected ')' before '*' token
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:78: error: expected ')' before '*' token
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:79: error: expected ')' before '*' token
+/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:80: error: expected ')' before '*' token
+configure:5105: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "ViennaRNA"
+| #define PACKAGE_TARNAME "ViennaRNA"
+| #define PACKAGE_VERSION "2.1.2"
+| #define PACKAGE_STRING "ViennaRNA 2.1.2"
+| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
+| #define PACKAGE_URL "http://www.tbi.univie.ac.a/~ivo/RNA"
+| #define PACKAGE "ViennaRNA"
+| #define VERSION "2.1.2"
+| #define UNUSED __attribute__ ((unused))
+| /* end confdefs.h. */
+|
+| #ifndef _OPENMP
+| choke me
+| #endif
+| #include <omp.h>
+| int main () { return omp_get_num_threads (); }
+|
+configure:5122: gcc -o conftest -g -O2 -fopenmp conftest.c >&5
+configure:5122: $? = 0
+configure:5136: result: -fopenmp
+configure:5149: checking for exp in -lm
+configure:5174: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:19: warning: conflicting types for built-in function 'exp'
+configure:5174: $? = 0
+configure:5183: result: yes
+configure:5196: checking for egrep
+configure:5258: result: /bin/grep -E
+configure:5263: checking for ANSI C header files
+configure:5283: gcc -c -g -O2 conftest.c >&5
+configure:5283: $? = 0
+configure:5356: gcc -o conftest -g -O2 conftest.c -lm >&5
+configure:5356: $? = 0
+configure:5356: ./conftest
+configure:5356: $? = 0
+configure:5367: result: yes
+configure:5380: checking for sys/types.h
+configure:5380: gcc -c -g -O2 conftest.c >&5
+configure:5380: $? = 0
+configure:5380: result: yes
+configure:5380: checking for sys/stat.h
+configure:5380: gcc -c -g -O2 conftest.c >&5
+configure:5380: $? = 0
+configure:5380: result: yes
+configure:5380: checking for stdlib.h
+configure:5380: gcc -c -g -O2 conftest.c >&5
+configure:5380: $? = 0
+configure:5380: result: yes
+configure:5380: checking for string.h
+configure:5380: gcc -c -g -O2 conftest.c >&5
+configure:5380: $? = 0
+configure:5380: result: yes
+configure:5380: checking for memory.h
+configure:5380: gcc -c -g -O2 conftest.c >&5
+configure:5380: $? = 0
+configure:5380: result: yes
+configure:5380: checking for strings.h
+configure:5380: gcc -c -g -O2 conftest.c >&5
+configure:5380: $? = 0
+configure:5380: result: yes
+configure:5380: checking for inttypes.h
+configure:5380: gcc -c -g -O2 conftest.c >&5
+configure:5380: $? = 0
+configure:5380: result: yes
+configure:5380: checking for stdint.h
+configure:5380: gcc -c -g -O2 conftest.c >&5
+configure:5380: $? = 0
+configure:5380: result: yes
+configure:5380: checking for unistd.h
+configure:5380: gcc -c -g -O2 conftest.c >&5
+configure:5380: $? = 0
+configure:5380: result: yes
+configure:5392: checking for stdbool.h that conforms to C99
+configure:5459: gcc -c -g -O2 conftest.c >&5
+configure:5459: $? = 0
+configure:5466: result: yes
+configure:5468: checking for _Bool
+configure:5468: gcc -c -g -O2 conftest.c >&5
+configure:5468: $? = 0
+configure:5468: gcc -c -g -O2 conftest.c >&5
+conftest.c: In function 'main':
+conftest.c:59: error: expected expression before ')' token
+configure:5468: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "ViennaRNA"
+| #define PACKAGE_TARNAME "ViennaRNA"
+| #define PACKAGE_VERSION "2.1.2"
+| #define PACKAGE_STRING "ViennaRNA 2.1.2"
+| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
+| #define PACKAGE_URL "http://www.tbi.univie.ac.a/~ivo/RNA"
+| #define PACKAGE "ViennaRNA"
+| #define VERSION "2.1.2"
+| #define UNUSED __attribute__ ((unused))
+| #define HAVE_LIBM 1
+| #define STDC_HEADERS 1
+| #define HAVE_SYS_TYPES_H 1
+| #define HAVE_SYS_STAT_H 1
+| #define HAVE_STDLIB_H 1
+| #define HAVE_STRING_H 1
+| #define HAVE_MEMORY_H 1
+| #define HAVE_STRINGS_H 1
+| #define HAVE_INTTYPES_H 1
+| #define HAVE_STDINT_H 1
+| #define HAVE_UNISTD_H 1
+| /* end confdefs.h. */
+| #include <stdio.h>
+| #ifdef HAVE_SYS_TYPES_H
+| # include <sys/types.h>
+| #endif
+| #ifdef HAVE_SYS_STAT_H
+| # include <sys/stat.h>
+| #endif
+| #ifdef STDC_HEADERS
+| # include <stdlib.h>
+| # include <stddef.h>
+| #else
+| # ifdef HAVE_STDLIB_H
+| # include <stdlib.h>
+| # endif
+| #endif
+| #ifdef HAVE_STRING_H
+| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
+| # include <memory.h>
+| # endif
+| # include <string.h>
+| #endif
+| #ifdef HAVE_STRINGS_H
+| # include <strings.h>
+| #endif
+| #ifdef HAVE_INTTYPES_H
+| # include <inttypes.h>
+| #endif
+| #ifdef HAVE_STDINT_H
+| # include <stdint.h>
+| #endif
+| #ifdef HAVE_UNISTD_H
+| # include <unistd.h>
+| #endif
+| int
+| main ()
+| {
+| if (sizeof ((_Bool)))
+| return 0;
+| ;
+| return 0;
+| }
+configure:5468: result: yes
+configure:5487: checking malloc.h usability
+configure:5487: gcc -c -g -O2 conftest.c >&5
+configure:5487: $? = 0
+configure:5487: result: yes
+configure:5487: checking malloc.h presence
+configure:5487: gcc -E conftest.c
+configure:5487: $? = 0
+configure:5487: result: yes
+configure:5487: checking for malloc.h
+configure:5487: result: yes
+configure:5487: checking float.h usability
+configure:5487: gcc -c -g -O2 conftest.c >&5
+configure:5487: $? = 0
+configure:5487: result: yes
+configure:5487: checking float.h presence
+configure:5487: gcc -E conftest.c
+configure:5487: $? = 0
+configure:5487: result: yes
+configure:5487: checking for float.h
+configure:5487: result: yes
+configure:5487: checking limits.h usability
+configure:5487: gcc -c -g -O2 conftest.c >&5
+configure:5487: $? = 0
+configure:5487: result: yes
+configure:5487: checking limits.h presence
+configure:5487: gcc -E conftest.c
+configure:5487: $? = 0
+configure:5487: result: yes
+configure:5487: checking for limits.h
+configure:5487: result: yes
+configure:5487: checking for stdlib.h
+configure:5487: result: yes
+configure:5487: checking for string.h
+configure:5487: result: yes
+configure:5487: checking for strings.h
+configure:5487: result: yes
+configure:5487: checking for unistd.h
+configure:5487: result: yes
+configure:5487: checking for unistd.h
+configure:5487: result: yes
+configure:5487: checking math.h usability
+configure:5487: gcc -c -g -O2 conftest.c >&5
+configure:5487: $? = 0
+configure:5487: result: yes
+configure:5487: checking math.h presence
+configure:5487: gcc -E conftest.c
+configure:5487: $? = 0
+configure:5487: result: yes
+configure:5487: checking for math.h
+configure:5487: result: yes
+configure:5500: checking for stdlib.h
+configure:5500: result: yes
+configure:5510: checking for GNU libc compatible malloc
+configure:5534: gcc -o conftest -g -O2 conftest.c -lm >&5
+configure:5534: $? = 0
+configure:5534: ./conftest
+configure:5534: $? = 0
+configure:5544: result: yes
+configure:5567: checking for stdlib.h
+configure:5567: result: yes
+configure:5577: checking for GNU libc compatible realloc
+configure:5601: gcc -o conftest -g -O2 conftest.c -lm >&5
+configure:5601: $? = 0
+configure:5601: ./conftest
+configure:5601: $? = 0
+configure:5611: result: yes
+configure:5632: checking for working strtod
+configure:5673: gcc -o conftest -g -O2 conftest.c -lm >&5
+configure:5673: $? = 0
+configure:5673: ./conftest
+configure:5673: $? = 0
+configure:5683: result: yes
+configure:5748: checking for floor
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:61: warning: conflicting types for built-in function 'floor'
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for strdup
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:62: warning: conflicting types for built-in function 'strdup'
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for strstr
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:63: warning: conflicting types for built-in function 'strstr'
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for strchr
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:64: warning: conflicting types for built-in function 'strchr'
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for strrchr
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:65: warning: conflicting types for built-in function 'strrchr'
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for strstr
+configure:5748: result: yes
+configure:5748: checking for strtol
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for strtoul
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for pow
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:69: warning: conflicting types for built-in function 'pow'
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for rint
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:70: warning: conflicting types for built-in function 'rint'
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for sqrt
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:71: warning: conflicting types for built-in function 'sqrt'
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for erand48
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for memset
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:73: warning: conflicting types for built-in function 'memset'
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for memmove
+configure:5748: gcc -o conftest -g -O2 conftest.c -lm >&5
+conftest.c:74: warning: conflicting types for built-in function 'memmove'
+configure:5748: $? = 0
+configure:5748: result: yes
+configure:5748: checking for erand48
+configure:5748: result: yes
+configure:5758: checking for an ANSI C-conforming const
+configure:5823: gcc -c -g -O2 conftest.c >&5
+configure:5823: $? = 0
+configure:5830: result: yes
+configure:5838: checking for size_t
+configure:5838: gcc -c -g -O2 conftest.c >&5
+configure:5838: $? = 0
+configure:5838: gcc -c -g -O2 conftest.c >&5
+conftest.c: In function 'main':
+conftest.c:89: error: expected expression before ')' token
+configure:5838: $? = 1
+configure: failed program was:
+| /* confdefs.h */
+| #define PACKAGE_NAME "ViennaRNA"
+| #define PACKAGE_TARNAME "ViennaRNA"
+| #define PACKAGE_VERSION "2.1.2"
+| #define PACKAGE_STRING "ViennaRNA 2.1.2"
+| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
+| #define PACKAGE_URL "http://www.tbi.univie.ac.a/~ivo/RNA"
+| #define PACKAGE "ViennaRNA"
+| #define VERSION "2.1.2"
+| #define UNUSED __attribute__ ((unused))
+| #define HAVE_LIBM 1
+| #define STDC_HEADERS 1
+| #define HAVE_SYS_TYPES_H 1
+| #define HAVE_SYS_STAT_H 1
+| #define HAVE_STDLIB_H 1
+| #define HAVE_STRING_H 1
+| #define HAVE_MEMORY_H 1
+| #define HAVE_STRINGS_H 1
+| #define HAVE_INTTYPES_H 1
+| #define HAVE_STDINT_H 1
+| #define HAVE_UNISTD_H 1
+| #define HAVE__BOOL 1
+| #define HAVE_STDBOOL_H 1
+| #define HAVE_MALLOC_H 1
+| #define HAVE_FLOAT_H 1
+| #define HAVE_LIMITS_H 1
+| #define HAVE_STDLIB_H 1
+| #define HAVE_STRING_H 1
+| #define HAVE_STRINGS_H 1
+| #define HAVE_UNISTD_H 1
+| #define HAVE_UNISTD_H 1
+| #define HAVE_MATH_H 1
+| #define HAVE_STDLIB_H 1
+| #define HAVE_MALLOC 1
+| #define HAVE_STDLIB_H 1
+| #define HAVE_REALLOC 1
+| #define HAVE_FLOOR 1
+| #define HAVE_STRDUP 1
+| #define HAVE_STRSTR 1
+| #define HAVE_STRCHR 1
+| #define HAVE_STRRCHR 1
+| #define HAVE_STRSTR 1
+| #define HAVE_STRTOL 1
+| #define HAVE_STRTOUL 1
+| #define HAVE_POW 1
+| #define HAVE_RINT 1
+| #define HAVE_SQRT 1
+| #define HAVE_ERAND48 1
+| #define HAVE_MEMSET 1
+| #define HAVE_MEMMOVE 1
+| #define HAVE_ERAND48 1
+| /* end confdefs.h. */
+| #include <stdio.h>
+| #ifdef HAVE_SYS_TYPES_H
+| # include <sys/types.h>
+| #endif
+| #ifdef HAVE_SYS_STAT_H
+| # include <sys/stat.h>
+| #endif
+| #ifdef STDC_HEADERS
+| # include <stdlib.h>
+| # include <stddef.h>
+| #else
+| # ifdef HAVE_STDLIB_H
+| # include <stdlib.h>
+| # endif
+| #endif
+| #ifdef HAVE_STRING_H
+| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
+| # include <memory.h>
+| # endif
+| # include <string.h>
+| #endif
+| #ifdef HAVE_STRINGS_H
+| # include <strings.h>
+| #endif
+| #ifdef HAVE_INTTYPES_H
+| # include <inttypes.h>
+| #endif
+| #ifdef HAVE_STDINT_H
+| # include <stdint.h>
+| #endif
+| #ifdef HAVE_UNISTD_H
+| # include <unistd.h>
+| #endif
+| int
+| main ()
+| {
+| if (sizeof ((size_t)))
+| return 0;
+| ;
+| return 0;
+| }
+configure:5838: result: yes
+configure:5849: checking for inline
+configure:5865: gcc -c -g -O2 conftest.c >&5
+configure:5865: $? = 0
+configure:5873: result: inline
+configure:5920: checking for interfaces/Perl/Makefile.am
+configure:5923: result: yes
+configure:6034: checking for Kinfold/Makefile.am
+configure:6037: result: yes
+configure:6072: checking for RNAforester/Makefile.am
+configure:6075: result: yes
+configure:6148: checking for libsvm-2.91/svm.cpp
+configure:6151: result: yes
+configure:6148: checking for libsvm-2.91/svm.h
+configure:6151: result: yes
+configure:6286: checking whether float precision is used for partition function arrays instead of double precision
+configure:6293: result: no
+configure:6299: checking for perl
+configure:6317: found /usr/bin/perl
+configure:6329: result: /usr/bin/perl
+configure:6365: checking for python
+configure:6383: found /homes/fmmarquesmadeira/.local/anaconda/envs/python3/bin/python
+configure:6395: result: /homes/fmmarquesmadeira/.local/anaconda/envs/python3/bin/python
+configure:6407: WARNING: You need Python >= 2.5 and < 3.0 to build the Python extension
+configure:6410: WARNING: You may set the PythonCmd environment variable to point to
+ a suitable python binary
+configure:6524: checking for doxygen
+configure:6542: found /usr/bin/doxygen
+configure:6555: result: /usr/bin/doxygen
+configure:6565: checking for pdflatex
+configure:6583: found /usr/bin/pdflatex
+configure:6596: result: /usr/bin/pdflatex
+configure:6606: checking for latex
+configure:6624: found /usr/bin/latex
+configure:6637: result: /usr/bin/latex
+configure:6647: checking for makeindex
+configure:6665: found /usr/bin/makeindex
+configure:6678: result: /usr/bin/makeindex
+configure:6688: checking for dot
+configure:6706: found /usr/bin/dot
+configure:6719: result: /usr/bin/dot
+configure:6729: checking for egrep
+configure:6747: found /bin/egrep
+configure:6760: result: /bin/egrep
+configure:6770: checking for perl
+configure:6788: found /usr/bin/perl
+configure:6801: result: /usr/bin/perl
+configure:6850: WARNING: due to a bug in older versions of doxygen, latex will be used for reference manual generation even if pdflatex is available
+configure:7212: creating ./config.status
+
+## ---------------------- ##
+## Running config.status. ##
+## ---------------------- ##
+
+This file was extended by ViennaRNA config.status 2.1.2, which was
+generated by GNU Autoconf 2.68. Invocation command line was
+
+ CONFIG_FILES =
+ CONFIG_HEADERS =
+ CONFIG_LINKS =
+ CONFIG_COMMANDS =
+ $ ./config.status
+
+on ningal.cluster.lifesci.dundee.ac.uk
+
+config.status:983: creating interfaces/Perl/Makefile
+config.status:983: creating interfaces/Perl/Makefile.PL
+config.status:983: creating doc/doxygen.conf
+config.status:983: creating misc/Makefile
+config.status:983: creating misc/ViennaRNA.spec
+config.status:983: creating misc/PKGBUILD
+config.status:983: creating interfaces/Makefile
+config.status:983: creating Makefile
+config.status:983: creating RNAlib2.pc
+config.status:983: creating Utils/Makefile
+config.status:983: creating Progs/Makefile
+config.status:983: creating lib/Makefile
+config.status:983: creating man/Makefile
+config.status:983: creating H/Makefile
+config.status:983: creating doc/Makefile
+config.status:983: creating man/cmdlopt.sh
+config.status:983: creating config.h
+config.status:1212: executing depfiles commands
+configure:8628: === configuring in Kinfold (/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/Kinfold)
+configure:8691: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' --cache-file=/dev/null --srcdir=.
+configure:8628: === configuring in RNAforester (/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/RNAforester)
+configure:8691: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' --cache-file=/dev/null --srcdir=.
+configure:8752:
+Configure successful with the following options:
+
+RNAlib Interfaces:
+ Perl Interface: yes
+ Python Interface: no
+ Ruby Interface: no
+
+Extra Programs:
+ Analyse{Dists,Seqs}: no
+ Kinfold: yes
+ RNAforester: yes
+
+Other Options:
+ SVM: yes
+ Documentation: yes
+ (HTML): yes
+ (PDF): yes
+-
+Files will be installed in the following directories:
+
+ Executables: /usr/local/bin
+ Libraries: /usr/local/lib
+ Header files: /usr/local/include
+ Extra Data: /usr/local/share
+ Man pages: /usr/local/share/man
+ Documentation: /usr/local/share/doc/ViennaRNA
+ (HTML): /usr/local/share/doc/ViennaRNA/html
+ (PDF): /usr/local/share/doc/ViennaRNA
+
+
+## ---------------- ##
+## Cache variables. ##
+## ---------------- ##
+
+ac_cv_build=x86_64-unknown-linux-gnu
+ac_cv_c_compiler_gnu=yes
+ac_cv_c_const=yes
+ac_cv_c_inline=inline
+ac_cv_cxx_compiler_gnu=yes
+ac_cv_env_CCC_set=
+ac_cv_env_CCC_value=
+ac_cv_env_CC_set=
+ac_cv_env_CC_value=
+ac_cv_env_CFLAGS_set=
+ac_cv_env_CFLAGS_value=
+ac_cv_env_CPPFLAGS_set=
+ac_cv_env_CPPFLAGS_value=
+ac_cv_env_CPP_set=
+ac_cv_env_CPP_value=
+ac_cv_env_CXXCPP_set=
+ac_cv_env_CXXCPP_value=
+ac_cv_env_CXXFLAGS_set=
+ac_cv_env_CXXFLAGS_value=
+ac_cv_env_CXX_set=
+ac_cv_env_CXX_value=
+ac_cv_env_FPIC_set=
+ac_cv_env_FPIC_value=
+ac_cv_env_LDFLAGS_set=
+ac_cv_env_LDFLAGS_value=
+ac_cv_env_LIBS_set=
+ac_cv_env_LIBS_value=
+ac_cv_env_PERLPREFIX_set=
+ac_cv_env_PERLPREFIX_value=
+ac_cv_env_build_alias_set=
+ac_cv_env_build_alias_value=
+ac_cv_env_host_alias_set=
+ac_cv_env_host_alias_value=
+ac_cv_env_target_alias_set=
+ac_cv_env_target_alias_value=
+ac_cv_func_erand48=yes
+ac_cv_func_floor=yes
+ac_cv_func_malloc_0_nonnull=yes
+ac_cv_func_memmove=yes
+ac_cv_func_memset=yes
+ac_cv_func_pow=yes
+ac_cv_func_realloc_0_nonnull=yes
+ac_cv_func_rint=yes
+ac_cv_func_sqrt=yes
+ac_cv_func_strchr=yes
+ac_cv_func_strdup=yes
+ac_cv_func_strrchr=yes
+ac_cv_func_strstr=yes
+ac_cv_func_strtod=yes
+ac_cv_func_strtol=yes
+ac_cv_func_strtoul=yes
+ac_cv_header_float_h=yes
+ac_cv_header_inttypes_h=yes
+ac_cv_header_limits_h=yes
+ac_cv_header_malloc_h=yes
+ac_cv_header_math_h=yes
+ac_cv_header_memory_h=yes
+ac_cv_header_stdbool_h=yes
+ac_cv_header_stdc=yes
+ac_cv_header_stdint_h=yes
+ac_cv_header_stdlib_h=yes
+ac_cv_header_string_h=yes
+ac_cv_header_strings_h=yes
+ac_cv_header_sys_stat_h=yes
+ac_cv_header_sys_types_h=yes
+ac_cv_header_unistd_h=yes
+ac_cv_host=x86_64-unknown-linux-gnu
+ac_cv_lib_m_exp=yes
+ac_cv_objext=o
+ac_cv_path_EGREP='/bin/grep -E'
+ac_cv_path_GREP=/bin/grep
+ac_cv_path_PerlCmd=/usr/bin/perl
+ac_cv_path_PythonCmd=/homes/fmmarquesmadeira/.local/anaconda/envs/python3/bin/python
+ac_cv_path_dot=/usr/bin/dot
+ac_cv_path_doxygen=/usr/bin/doxygen
+ac_cv_path_egrep=/bin/egrep
+ac_cv_path_install='/usr/bin/install -c'
+ac_cv_path_latex=/usr/bin/latex
+ac_cv_path_makeindex=/usr/bin/makeindex
+ac_cv_path_mkdir=/bin/mkdir
+ac_cv_path_pdflatex=/usr/bin/pdflatex
+ac_cv_path_perl=/usr/bin/perl
+ac_cv_prog_AWK=gawk
+ac_cv_prog_CPP='gcc -E'
+ac_cv_prog_CXXCPP='g++ -E'
+ac_cv_prog_ac_ct_CC=gcc
+ac_cv_prog_ac_ct_CXX=g++
+ac_cv_prog_ac_ct_RANLIB=ranlib
+ac_cv_prog_c_openmp=-fopenmp
+ac_cv_prog_cc_c89=
+ac_cv_prog_cc_fpic=yes
+ac_cv_prog_cc_g=yes
+ac_cv_prog_cc_gcc_c_o=yes
+ac_cv_prog_cxx_g=yes
+ac_cv_prog_make_make_set=yes
+ac_cv_type__Bool=yes
+ac_cv_type_size_t=yes
+am_cv_CC_dependencies_compiler_type=gcc3
+am_cv_CXX_dependencies_compiler_type=gcc3
+am_cv_make_support_nested_variables=yes
+
+## ----------------- ##
+## Output variables. ##
+## ----------------- ##
+
+ACLOCAL='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run aclocal-1.11'
+AMDEPBACKSLASH='\'
+AMDEP_FALSE='#'
+AMDEP_TRUE=''
+AMTAR='$${TAR-tar}'
+AM_BACKSLASH='\'
+AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
+AM_DEFAULT_VERBOSITY='0'
+AM_V='$(V)'
+AUTOCONF='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run autoconf'
+AUTOHEADER='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run autoheader'
+AUTOMAKE='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run automake-1.11'
+AWK='gawk'
+CC='gcc'
+CCDEPMODE='depmode=gcc3'
+CFLAGS='-g -O2'
+CLUSTER_DIR=''
+CPP='gcc -E'
+CPPFLAGS=''
+CXX='g++'
+CXXCPP='g++ -E'
+CXXDEPMODE='depmode=gcc3'
+CXXFLAGS='-g -O2'
+CXXLD='g++'
+CYGPATH_W='echo'
+DEFS='-DHAVE_CONFIG_H'
+DEPDIR='.deps'
+DOXYGEN_CMD_LATEX='/usr/bin/latex'
+DOXYGEN_CMD_MAKEINDEX='/usr/bin/makeindex'
+DOXYGEN_CONF='doxygen.conf'
+DOXYGEN_DOCDIR='doc'
+DOXYGEN_GENERATE_HTML='YES'
+DOXYGEN_GENERATE_LATEX='YES'
+DOXYGEN_HAVE_DOT='YES'
+DOXYGEN_PROJECT_NAME='RNAlib-2.1.2'
+DOXYGEN_SRCDIR='.'
+DOXYGEN_WITH_PDFLATEX='YES'
+ECHO_C=''
+ECHO_N='-n'
+ECHO_T=''
+EGREP='/bin/grep -E'
+EXEEXT=''
+FPIC='-fpic'
+GREP='/bin/grep'
+INSTALL_DATA='${INSTALL} -m 644'
+INSTALL_PROGRAM='${INSTALL}'
+INSTALL_SCRIPT='${INSTALL}'
+INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
+ISODATE='2017-04-11'
+LDFLAGS=''
+LIBOBJS=''
+LIBS='-lm '
+LIBSVM_DIR='libsvm-2.91'
+LTLIBOBJS=''
+MAKEINFO='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run makeinfo'
+MAKE_CLUSTER_FALSE=''
+MAKE_CLUSTER_TRUE='#'
+MAKE_FORESTER_FALSE='#'
+MAKE_FORESTER_TRUE=''
+MAKE_KINFOLD_FALSE='#'
+MAKE_KINFOLD_TRUE=''
+MKDIR_P='/bin/mkdir -p'
+OBJEXT='o'
+OPENMP_CFLAGS='-fopenmp'
+PACKAGE='ViennaRNA'
+PACKAGE_BUGREPORT='rna@tbi.univie.ac.at'
+PACKAGE_NAME='ViennaRNA'
+PACKAGE_STRING='ViennaRNA 2.1.2'
+PACKAGE_TARNAME='ViennaRNA'
+PACKAGE_URL='http://www.tbi.univie.ac.a/~ivo/RNA'
+PACKAGE_VERSION='2.1.2'
+PATH_SEPARATOR=':'
+PERLPREFIX=''
+PERL_INTERFACE='Perl'
+POW_LIB=''
+PYTHON_INTERFACE=''
+PerlCmd='/usr/bin/perl'
+PythonCmd='/homes/fmmarquesmadeira/.local/anaconda/envs/python3/bin/python'
+RANLIB='ranlib'
+REFERENCE_MANUAL_PDF_NAME='RNAlib-2.1.2.pdf'
+REFERENCE_MANUAL_TAGFILE='RNAlib-2.1.2.tag'
+SET_MAKE=''
+SHELL='/bin/sh'
+STRIP=''
+VERSION='2.1.2'
+WITH_LARGE_PF_FALSE='#'
+WITH_LARGE_PF_TRUE=''
+WITH_LIBSVM_FALSE='#'
+WITH_LIBSVM_TRUE=''
+WITH_REFERENCE_MANUAL_BUILD_FALSE='#'
+WITH_REFERENCE_MANUAL_BUILD_TRUE=''
+WITH_REFERENCE_MANUAL_FALSE='#'
+WITH_REFERENCE_MANUAL_HTML_FALSE='#'
+WITH_REFERENCE_MANUAL_HTML_TRUE=''
+WITH_REFERENCE_MANUAL_PDF_FALSE='#'
+WITH_REFERENCE_MANUAL_PDF_TRUE=''
+WITH_REFERENCE_MANUAL_TRUE=''
+ac_ct_CC='gcc'
+ac_ct_CXX='g++'
+am__EXEEXT_FALSE=''
+am__EXEEXT_TRUE='#'
+am__fastdepCC_FALSE='#'
+am__fastdepCC_TRUE=''
+am__fastdepCXX_FALSE='#'
+am__fastdepCXX_TRUE=''
+am__include='include'
+am__isrc=''
+am__leading_dot='.'
+am__nodep='_no'
+am__quote=''
+am__tar='$${TAR-tar} chof - "$$tardir"'
+am__untar='$${TAR-tar} xf -'
+bindir='${exec_prefix}/bin'
+build='x86_64-unknown-linux-gnu'
+build_alias=''
+build_cpu='x86_64'
+build_os='linux-gnu'
+build_vendor='unknown'
+datadir='${datarootdir}'
+datarootdir='${prefix}/share'
+docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
+dot='/usr/bin/dot'
+doxygen='/usr/bin/doxygen'
+dvidir='${docdir}'
+egrep='/bin/egrep'
+exec_prefix='${prefix}'
+host='x86_64-unknown-linux-gnu'
+host_alias=''
+host_cpu='x86_64'
+host_os='linux-gnu'
+host_vendor='unknown'
+htmldir='${docdir}'
+includedir='${prefix}/include'
+infodir='${datarootdir}/info'
+install_sh='${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/install-sh'
+latex='/usr/bin/latex'
+libdir='${exec_prefix}/lib'
+libexecdir='${exec_prefix}/libexec'
+localedir='${datarootdir}/locale'
+localstatedir='${prefix}/var'
+makeindex='/usr/bin/makeindex'
+mandir='${datarootdir}/man'
+mkdir_p='/bin/mkdir -p'
+oldincludedir='/usr/include'
+pdfdir='${docdir}'
+pdflatex='no'
+perl='/usr/bin/perl'
+prefix='/usr/local'
+program_transform_name='s,x,x,'
+psdir='${docdir}'
+sbindir='${exec_prefix}/sbin'
+sharedstatedir='${prefix}/com'
+subdirs=' Kinfold RNAforester'
+sysconfdir='${prefix}/etc'
+target_alias=''
+
+## ----------- ##
+## confdefs.h. ##
+## ----------- ##
+
+/* confdefs.h */
+#define PACKAGE_NAME "ViennaRNA"
+#define PACKAGE_TARNAME "ViennaRNA"
+#define PACKAGE_VERSION "2.1.2"
+#define PACKAGE_STRING "ViennaRNA 2.1.2"
+#define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
+#define PACKAGE_URL "http://www.tbi.univie.ac.a/~ivo/RNA"
+#define PACKAGE "ViennaRNA"
+#define VERSION "2.1.2"
+#define UNUSED __attribute__ ((unused))
+#define HAVE_LIBM 1
+#define STDC_HEADERS 1
+#define HAVE_SYS_TYPES_H 1
+#define HAVE_SYS_STAT_H 1
+#define HAVE_STDLIB_H 1
+#define HAVE_STRING_H 1
+#define HAVE_MEMORY_H 1
+#define HAVE_STRINGS_H 1
+#define HAVE_INTTYPES_H 1
+#define HAVE_STDINT_H 1
+#define HAVE_UNISTD_H 1
+#define HAVE__BOOL 1
+#define HAVE_STDBOOL_H 1
+#define HAVE_MALLOC_H 1
+#define HAVE_FLOAT_H 1
+#define HAVE_LIMITS_H 1
+#define HAVE_STDLIB_H 1
+#define HAVE_STRING_H 1
+#define HAVE_STRINGS_H 1
+#define HAVE_UNISTD_H 1
+#define HAVE_UNISTD_H 1
+#define HAVE_MATH_H 1
+#define HAVE_STDLIB_H 1
+#define HAVE_MALLOC 1
+#define HAVE_STDLIB_H 1
+#define HAVE_REALLOC 1
+#define HAVE_FLOOR 1
+#define HAVE_STRDUP 1
+#define HAVE_STRSTR 1
+#define HAVE_STRCHR 1
+#define HAVE_STRRCHR 1
+#define HAVE_STRSTR 1
+#define HAVE_STRTOL 1
+#define HAVE_STRTOUL 1
+#define HAVE_POW 1
+#define HAVE_RINT 1
+#define HAVE_SQRT 1
+#define HAVE_ERAND48 1
+#define HAVE_MEMSET 1
+#define HAVE_MEMMOVE 1
+#define HAVE_ERAND48 1
+#define WITH_PERL_INTERFACE 1
+#define USE_SVM 1
+
+configure: exit 0
git://source.jalview.org / jabaws.git / blobdiff