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+<h1>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/LPfold.h File Reference</h1>
<p>Function declarations of partition function variants of the Lfold algorithm.
-<a href="#details">More...</a></p>
-<div class="textblock"><div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
- <img id="dynsection-0-trigger" src="closed.png" alt="+"/> Include dependency graph for LPfold.h:</div>
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-</div>
-<div id="dynsection-0-content" class="dyncontent" style="display:none;">
-<div class="center"><img src="LPfold_8h__incl.png" border="0" usemap="#_2home_2mescalin_2ronny_2public__html_2programs_2ViennaRNA_2H_2LPfold_8h" alt=""/></div>
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+Include dependency graph for LPfold.h:</div>
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+
<p><a href="LPfold_8h_source.html">Go to the source code of this file.</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2><a name="func-members"></a>
-Functions</h2></td></tr>
-<tr class="memitem:ga5a019014d37fe6105131dfc2fc447880"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html#ga5a019014d37fe6105131dfc2fc447880">update_pf_paramsLP</a> (int length)</td></tr>
-<tr class="memitem:gaa1ecd401617ebc748a0220026543c777"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structplist.html">plist</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html#gaa1ecd401617ebc748a0220026543c777">pfl_fold</a> (char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct <a class="el" href="structplist.html">plist</a> **dpp2, FILE *pUfp, FILE *spup)</td></tr>
-<tr class="memdesc:gaa1ecd401617ebc748a0220026543c777"><td class="mdescLeft"> </td><td class="mdescRight">Compute partition functions for locally stable secondary structures. <a href="group__local__pf__fold.html#gaa1ecd401617ebc748a0220026543c777"></a><br/></td></tr>
-<tr class="memitem:gab354507e8028f3e1c52ef96bb1eb9df8"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="gab354507e8028f3e1c52ef96bb1eb9df8"></a>
-<a class="el" href="structplist.html">plist</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html#gab354507e8028f3e1c52ef96bb1eb9df8">pfl_fold_par</a> (char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct <a class="el" href="structplist.html">plist</a> **dpp2, FILE *pUfp, FILE *spup, <a class="el" href="structpf__paramT.html">pf_paramT</a> *parameters)</td></tr>
-<tr class="memdesc:gab354507e8028f3e1c52ef96bb1eb9df8"><td class="mdescLeft"> </td><td class="mdescRight">Compute partition functions for locally stable secondary structures. <br/></td></tr>
-<tr class="memitem:ga0bcb751860bbf34e3dfee8c2fbdb3ef3"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html#ga0bcb751860bbf34e3dfee8c2fbdb3ef3">putoutpU_prob</a> (double **pU, int length, int ulength, FILE *fp, int energies)</td></tr>
-<tr class="memdesc:ga0bcb751860bbf34e3dfee8c2fbdb3ef3"><td class="mdescLeft"> </td><td class="mdescRight">Writes the unpaired probabilities (pU) or opening energies into a file. <a href="group__local__pf__fold.html#ga0bcb751860bbf34e3dfee8c2fbdb3ef3"></a><br/></td></tr>
-<tr class="memitem:ga9acb00ee10e96b1ca4ea394cd8bcec75"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html#ga9acb00ee10e96b1ca4ea394cd8bcec75">putoutpU_prob_bin</a> (double **pU, int length, int ulength, FILE *fp, int energies)</td></tr>
-<tr class="memdesc:ga9acb00ee10e96b1ca4ea394cd8bcec75"><td class="mdescLeft"> </td><td class="mdescRight">Writes the unpaired probabilities (pU) or opening energies into a binary file. <a href="group__local__pf__fold.html#ga9acb00ee10e96b1ca4ea394cd8bcec75"></a><br/></td></tr>
-<tr class="memitem:ae85bf55053e9fb295208be322e0fa07a"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="LPfold_8h.html#ae85bf55053e9fb295208be322e0fa07a">init_pf_foldLP</a> (int length)</td></tr>
+<table border="0" cellpadding="0" cellspacing="0">
+<tr><td colspan="2"><h2>Functions</h2></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html#ga5a019014d37fe6105131dfc2fc447880">update_pf_paramsLP</a> (int length)</td></tr>
+<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="structplist.html">plist</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html#gaa1ecd401617ebc748a0220026543c777">pfl_fold</a> (char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct <a class="el" href="structplist.html">plist</a> **dpp2, FILE *pUfp, FILE *spup)</td></tr>
+<tr><td class="mdescLeft"> </td><td class="mdescRight">Compute partition functions for locally stable secondary structures. <a href="group__local__pf__fold.html#gaa1ecd401617ebc748a0220026543c777"></a><br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="gab354507e8028f3e1c52ef96bb1eb9df8"></a><!-- doxytag: member="LPfold.h::pfl_fold_par" ref="gab354507e8028f3e1c52ef96bb1eb9df8" args="(char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct plist **dpp2, FILE *pUfp, FILE *spup, pf_paramT *parameters)" -->
+<a class="el" href="structplist.html">plist</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html#gab354507e8028f3e1c52ef96bb1eb9df8">pfl_fold_par</a> (char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct <a class="el" href="structplist.html">plist</a> **dpp2, FILE *pUfp, FILE *spup, <a class="el" href="structpf__paramT.html">pf_paramT</a> *parameters)</td></tr>
+<tr><td class="mdescLeft"> </td><td class="mdescRight">Compute partition functions for locally stable secondary structures. <br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html#ga0bcb751860bbf34e3dfee8c2fbdb3ef3">putoutpU_prob</a> (double **pU, int length, int ulength, FILE *fp, int energies)</td></tr>
+<tr><td class="mdescLeft"> </td><td class="mdescRight">Writes the unpaired probabilities (pU) or opening energies into a file. <a href="group__local__pf__fold.html#ga0bcb751860bbf34e3dfee8c2fbdb3ef3"></a><br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html#ga9acb00ee10e96b1ca4ea394cd8bcec75">putoutpU_prob_bin</a> (double **pU, int length, int ulength, FILE *fp, int energies)</td></tr>
+<tr><td class="mdescLeft"> </td><td class="mdescRight">Writes the unpaired probabilities (pU) or opening energies into a binary file. <a href="group__local__pf__fold.html#ga9acb00ee10e96b1ca4ea394cd8bcec75"></a><br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="LPfold_8h.html#ae85bf55053e9fb295208be322e0fa07a">init_pf_foldLP</a> (int length)</td></tr>
</table>
-<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
-<div class="textblock"><p>Function declarations of partition function variants of the Lfold algorithm. </p>
-</div><hr/><h2>Function Documentation</h2>
-<a class="anchor" id="ae85bf55053e9fb295208be322e0fa07a"></a>
+<hr/><a name="_details"></a><h2>Detailed Description</h2>
+<p>Function declarations of partition function variants of the Lfold algorithm. </p>
+<hr/><h2>Function Documentation</h2>
+<a class="anchor" id="ae85bf55053e9fb295208be322e0fa07a"></a><!-- doxytag: member="LPfold.h::init_pf_foldLP" ref="ae85bf55053e9fb295208be322e0fa07a" args="(int length)" -->
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void init_pf_foldLP </td>
<td>(</td>
- <td class="paramtype">int </td>
- <td class="paramname"><em>length</em></td><td>)</td>
+ <td class="paramtype">int </td>
+ <td class="paramname"> <em>length</em></td>
+ <td> ) </td>
<td></td>
</tr>
</table>
-</div><div class="memdoc">
+</div>
+<div class="memdoc">
<p>Dunno if this function was ever used by external programs linking to RNAlib, but it was declared PUBLIC before. Anyway, never use this function as it will be removed soon and does nothing at all </p>
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