<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta http-equiv="X-UA-Compatible" content="IE=9"/>
-<title>RNAlib-2.1.2: /home/mescalin/ronny/public_html/programs/ViennaRNA/H/energy_const.h File Reference</title>
+<title>RNAlib-2.1.2: /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy_const.h File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
-<link href="navtree.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="resize.js"></script>
-<script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript">
- $(document).ready(initResizable);
-</script>
-<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen.css" rel="stylesheet" type="text/css"/>
</head>
<body>
-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
- <td style="padding-left: 0.5em;">
- <div id="projectname">RNAlib-2.1.2
- </div>
- </td>
- </tr>
- </tbody>
-</table>
-</div>
-<!-- end header part -->
-<!-- Generated by Doxygen 1.8.1.1 -->
- <div id="navrow1" class="tabs">
- <ul class="tablist">
- <li><a href="index.html"><span>Main Page</span></a></li>
- <li><a href="pages.html"><span>Related Pages</span></a></li>
+<!-- Generated by Doxygen 1.6.1 -->
+<script type="text/javascript">
+<!--
+function changeDisplayState (e){
+ var num=this.id.replace(/[^[0-9]/g,'');
+ var button=this.firstChild;
+ var sectionDiv=document.getElementById('dynsection'+num);
+ if (sectionDiv.style.display=='none'||sectionDiv.style.display==''){
+ sectionDiv.style.display='block';
+ button.src='open.gif';
+ }else{
+ sectionDiv.style.display='none';
+ button.src='closed.gif';
+ }
+}
+function initDynSections(){
+ var divs=document.getElementsByTagName('div');
+ var sectionCounter=1;
+ for(var i=0;i<divs.length-1;i++){
+ if(divs[i].className=='dynheader'&&divs[i+1].className=='dynsection'){
+ var header=divs[i];
+ var section=divs[i+1];
+ var button=header.firstChild;
+ if (button!='IMG'){
+ divs[i].insertBefore(document.createTextNode(' '),divs[i].firstChild);
+ button=document.createElement('img');
+ divs[i].insertBefore(button,divs[i].firstChild);
+ }
+ header.style.cursor='pointer';
+ header.onclick=changeDisplayState;
+ header.id='dynheader'+sectionCounter;
+ button.src='closed.gif';
+ section.id='dynsection'+sectionCounter;
+ section.style.display='none';
+ section.style.marginLeft='14px';
+ sectionCounter++;
+ }
+ }
+}
+window.onload = initDynSections;
+-->
+</script>
+<div class="navigation" id="top">
+ <div class="tabs">
+ <ul>
+ <li><a href="main.html"><span>Main Page</span></a></li>
+ <li><a href="pages.html"><span>Related Pages</span></a></li>
<li><a href="modules.html"><span>Modules</span></a></li>
- <li><a href="annotated.html"><span>Data Structures</span></a></li>
+ <li><a href="annotated.html"><span>Data Structures</span></a></li>
<li class="current"><a href="files.html"><span>Files</span></a></li>
</ul>
</div>
- <div id="navrow2" class="tabs2">
- <ul class="tablist">
- <li><a href="files.html"><span>File List</span></a></li>
+ <div class="tabs">
+ <ul>
+ <li><a href="files.html"><span>File List</span></a></li>
<li><a href="globals.html"><span>Globals</span></a></li>
</ul>
</div>
-</div><!-- top -->
-<div id="side-nav" class="ui-resizable side-nav-resizable">
- <div id="nav-tree">
- <div id="nav-tree-contents">
- </div>
- </div>
- <div id="splitbar" style="-moz-user-select:none;"
- class="ui-resizable-handle">
- </div>
</div>
-<script type="text/javascript">
-$(document).ready(function(){initNavTree('energy__const_8h.html','');});
-</script>
-<div id="doc-content">
-<div class="header">
- <div class="summary">
-<a href="#define-members">Macros</a> </div>
- <div class="headertitle">
-<div class="title">energy_const.h File Reference</div> </div>
-</div><!--header-->
<div class="contents">
-<div class="textblock"><div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
- <img id="dynsection-0-trigger" src="closed.png" alt="+"/> Include dependency graph for energy_const.h:</div>
-<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
-</div>
-<div id="dynsection-0-content" class="dyncontent" style="display:none;">
-<div class="center"><img src="energy__const_8h__incl.png" border="0" usemap="#_2home_2mescalin_2ronny_2public__html_2programs_2ViennaRNA_2H_2energy__const_8h" alt=""/></div>
-</div>
-</div><div class="textblock"><div id="dynsection-1" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
- <img id="dynsection-1-trigger" src="closed.png" alt="+"/> This graph shows which files directly or indirectly include this file:</div>
-<div id="dynsection-1-summary" class="dynsummary" style="display:block;">
-</div>
-<div id="dynsection-1-content" class="dyncontent" style="display:none;">
-<div class="center"><img src="energy__const_8h__dep__incl.png" border="0" usemap="#_2home_2mescalin_2ronny_2public__html_2programs_2ViennaRNA_2H_2energy__const_8hdep" alt=""/></div>
-<map name="_2home_2mescalin_2ronny_2public__html_2programs_2ViennaRNA_2H_2energy__const_8hdep" id="_2home_2mescalin_2ronny_2public__html_2programs_2ViennaRNA_2H_2energy__const_8hdep">
-<area shape="rect" id="node3" href="data__structures_8h.html" title="All datastructures and typedefs shared among the Vienna RNA Package can be found here." alt="" coords="2279,109,2507,165"/><area shape="rect" id="node29" href="params_8h.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/params.h" alt="" coords="141,213,317,269"/><area shape="rect" id="node59" href="energy__par_8h_source.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/energy_par.h" alt="" coords="5,109,203,165"/><area shape="rect" id="node5" href="2Dfold_8h.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/2Dfold.h" alt="" coords="4197,213,4365,269"/><area shape="rect" id="node7" href="2Dpfold_8h.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/2Dpfold.h" alt="" coords="4389,213,4565,269"/><area shape="rect" id="node9" href="ali__plex_8h_source.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/ali_plex.h" alt="" coords="342,213,516,269"/><area shape="rect" id="node11" href="alifold_8h.html" title="compute various properties (consensus MFE structures, partition function, Boltzmann distributed stoch..." alt="" coords="541,213,705,269"/><area shape="rect" id="node13" href="cofold_8h.html" title="MFE version of cofolding routines." alt="" coords="731,213,895,269"/><area shape="rect" id="node15" href="duplex_8h.html" title="Duplex folding function declarations..." alt="" coords="921,213,1089,269"/><area shape="rect" id="node17" href="findpath_8h.html" title="Compute direct refolding paths between two secondary structures." alt="" coords="1115,213,1293,269"/><area shape="rect" id="node19" href="fold_8h.html" title="MFE calculations and energy evaluations for single RNA sequences." alt="" coords="1317,213,1481,269"/><area shape="rect" id="node21" href="fold__vars_8h.html" title="Here all all declarations of the global variables used throughout RNAlib." alt="" coords="3141,213,3325,269"/><area shape="rect" id="node27" href="gquad_8h.html" title="Various functions related to G-quadruplex computations." alt="" coords="1507,213,1673,269"/><area shape="rect" id="node32" href="LPfold_8h.html" title="Function declarations of partition function variants of the Lfold algorithm." alt="" coords="1699,213,1863,269"/><area shape="rect" id="node34" href="MEA_8h.html" title="Computes a MEA (maximum expected accuracy) structure." alt="" coords="1888,213,2052,269"/><area shape="rect" id="node36" href="part__func_8h.html" title="Partition function of single RNA sequences." alt="" coords="2077,213,2264,269"/><area shape="rect" id="node38" href="part__func__co_8h.html" title="Partition function for two RNA sequences." alt="" coords="2289,213,2497,269"/><area shape="rect" id="node40" href="part__func__up_8h.html" title="Partition Function Cofolding as stepwise process." alt="" coords="2523,213,2732,269"/><area shape="rect" id="node42" href="PKplex_8h_source.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/PKplex.h" alt="" coords="2758,213,2927,269"/><area shape="rect" id="node44" href="plex_8h_source.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/plex.h" alt="" coords="2952,213,3116,269"/><area shape="rect" id="node46" href="plot__layouts_8h.html" title="Secondary structure plot layout algorithms." alt="" coords="4590,213,4793,269"/><area shape="rect" id="node48" href="PS__dot_8h.html" title="Various functions for plotting RNA secondary structures, dot-plots and other visualizations." alt="" coords="3978,317,4149,373"/><area shape="rect" id="node50" href="profiledist_8h.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/profiledist.h" alt="" coords="3400,213,3589,269"/><area shape="rect" id="node53" href="snofold_8h_source.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/snofold.h" alt="" coords="3613,213,3787,269"/><area shape="rect" id="node55" href="snoop_8h_source.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/snoop.h" alt="" coords="3811,213,3977,269"/><area shape="rect" id="node57" href="subopt_8h.html" title="RNAsubopt and density of states declarations." alt="" coords="4003,213,4173,269"/><area shape="rect" id="node23" href="loop__energies_8h.html" title="Energy evaluation for MFE and partition function calculations." alt="" coords="121,317,337,373"/><area shape="rect" id="node25" href="pair__mat_8h_source.html" title="/home/mescalin/ronny\l/public_html/programs\l/ViennaRNA/H/pair_mat.h" alt="" coords="3141,317,3325,373"/></map>
-</div>
+<h1>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy_const.h File Reference</h1><div class="dynheader">
+Include dependency graph for energy_const.h:</div>
+<div class="dynsection">
+<div class="center"><img src="energy__const_8h__incl.png" border="0" usemap="#_2homes_2fmmarquesmadeira_2Projects_2jabaws_2binaries_2src_2ViennaRNA_2H_2energy__const_8h_map" alt=""/></div>
+</div>
+<div class="dynheader">
+This graph shows which files directly or indirectly include this file:</div>
+<div class="dynsection">
+<div class="center"><img src="energy__const_8h__dep__incl.png" border="0" usemap="#_2homes_2fmmarquesmadeira_2Projects_2jabaws_2binaries_2src_2ViennaRNA_2H_2energy__const_8hdep_map" alt=""/></div>
+<map name="_2homes_2fmmarquesmadeira_2Projects_2jabaws_2binaries_2src_2ViennaRNA_2H_2energy__const_8hdep_map" id="_2homes_2fmmarquesmadeira_2Projects_2jabaws_2binaries_2src_2ViennaRNA_2H_2energy__const_8hdep">
+<area shape="rect" id="node3" href="data__structures_8h.html" title="All datastructures and typedefs shared among the Vienna RNA Package can be found..." alt="" coords="6343,86,6895,117"/><area shape="rect" id="node33" href="params_8h.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/params.h" alt="" coords="11707,166,12213,197"/><area shape="rect" id="node59" href="energy__par_8h_source.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy_par.h" alt="" coords="11987,86,12515,117"/><area shape="rect" id="node5" href="2Dfold_8h.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h" alt="" coords="7947,166,8448,197"/><area shape="rect" id="node7" href="2Dpfold_8h.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dpfold.h" alt="" coords="11176,166,11683,197"/><area shape="rect" id="node9" href="ali__plex_8h_source.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/ali_plex.h" alt="" coords="5,166,512,197"/><area shape="rect" id="node11" href="alifold_8h.html" title="compute various properties (consensus MFE structures, partition function, Boltzmann..." alt="" coords="536,166,1032,197"/><area shape="rect" id="node13" href="cofold_8h.html" title="MFE version of cofolding routines." alt="" coords="1056,166,1555,197"/><area shape="rect" id="node15" href="duplex_8h.html" title="Duplex folding function declarations..." alt="" coords="1579,166,2080,197"/><area shape="rect" id="node17" href="findpath_8h.html" title="Compute direct refolding paths between two secondary structures." alt="" coords="2104,166,2611,197"/><area shape="rect" id="node19" href="fold_8h.html" title="MFE calculations and energy evaluations for single RNA sequences." alt="" coords="2635,166,3117,197"/><area shape="rect" id="node21" href="fold__vars_8h.html" title="Here all all declarations of the global variables used throughout RNAlib." alt="" coords="8523,166,9037,197"/><area shape="rect" id="node27" href="gquad_8h.html" title="Various functions related to G-quadruplex computations." alt="" coords="3696,166,4195,197"/><area shape="rect" id="node29" href="LPfold_8h.html" title="Function declarations of partition function variants of the Lfold algorithm." alt="" coords="4219,166,4717,197"/><area shape="rect" id="node31" href="MEA_8h.html" title="Computes a MEA (maximum expected accuracy) structure." alt="" coords="4741,166,5229,197"/><area shape="rect" id="node36" href="part__func_8h.html" title="Partition function of single RNA sequences." alt="" coords="5253,166,5768,197"/><area shape="rect" id="node38" href="part__func__co_8h.html" title="Partition function for two RNA sequences." alt="" coords="5792,166,6328,197"/><area shape="rect" id="node40" href="part__func__up_8h.html" title="Partition Function Cofolding as stepwise process." alt="" coords="6352,166,6885,197"/><area shape="rect" id="node42" href="PKplex_8h_source.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/PKplex.h" alt="" coords="6909,166,7413,197"/><area shape="rect" id="node44" href="plex_8h_source.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/plex.h" alt="" coords="7437,166,7923,197"/><area shape="rect" id="node46" href="plot__layouts_8h.html" title="Secondary structure plot layout algorithms." alt="" coords="3141,166,3672,197"/><area shape="rect" id="node48" href="PS__dot_8h.html" title="Various functions for plotting RNA secondary structures, dot-plots and other visualizations..." alt="" coords="5575,246,6079,277"/><area shape="rect" id="node50" href="profiledist_8h.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/profiledist.h" alt="" coords="9061,166,9579,197"/><area shape="rect" id="node53" href="snofold_8h_source.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/snofold.h" alt="" coords="9603,166,10107,197"/><area shape="rect" id="node55" href="snoop_8h_source.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/snoop.h" alt="" coords="10131,166,10629,197"/><area shape="rect" id="node57" href="subopt_8h.html" title="RNAsubopt and density of states declarations." alt="" coords="10653,166,11152,197"/><area shape="rect" id="node23" href="loop__energies_8h.html" title="Energy evaluation for MFE and partition function calculations." alt="" coords="11687,246,12233,277"/><area shape="rect" id="node25" href="pair__mat_8h_source.html" title="/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/pair_mat.h" alt="" coords="8524,246,9036,277"/></map>
</div>
+
<p><a href="energy__const_8h_source.html">Go to the source code of this file.</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2><a name="define-members"></a>
-Macros</h2></td></tr>
-<tr class="memitem:ab1e4a8d82f24ed5db01dde5f25269cf1"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#ab1e4a8d82f24ed5db01dde5f25269cf1">GASCONST</a>   1.98717 /* in [cal/K] */</td></tr>
-<tr class="memitem:a307c72605e3713972b4f4fb2d53ea20e"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a307c72605e3713972b4f4fb2d53ea20e">K0</a>   273.15</td></tr>
-<tr class="memitem:a12c2040f25d8e3a7b9e1c2024c618cb6"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a12c2040f25d8e3a7b9e1c2024c618cb6">INF</a>   10000000 /* (INT_MAX/10) */</td></tr>
-<tr class="memitem:a5064c29ab2d1e20c2304b3c67562774d"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a5064c29ab2d1e20c2304b3c67562774d">FORBIDDEN</a>   9999</td></tr>
-<tr class="memitem:a96a9822fa134450197dd454b1478a193"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a96a9822fa134450197dd454b1478a193">BONUS</a>   10000</td></tr>
-<tr class="memitem:a5e75221c779d618eab81e096f37e32ce"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a5e75221c779d618eab81e096f37e32ce">NBPAIRS</a>   7</td></tr>
-<tr class="memitem:ae646250fd59311356c7e5722a81c3a96"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#ae646250fd59311356c7e5722a81c3a96">TURN</a>   3</td></tr>
-<tr class="memitem:ad1bd6eabac419670ddd3c9ed82145988"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#ad1bd6eabac419670ddd3c9ed82145988">MAXLOOP</a>   30</td></tr>
+<table border="0" cellpadding="0" cellspacing="0">
+<tr><td colspan="2"><h2>Defines</h2></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#ab1e4a8d82f24ed5db01dde5f25269cf1">GASCONST</a> 1.98717</td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a307c72605e3713972b4f4fb2d53ea20e">K0</a> 273.15</td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a12c2040f25d8e3a7b9e1c2024c618cb6">INF</a> 10000000</td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a5064c29ab2d1e20c2304b3c67562774d">FORBIDDEN</a> 9999</td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a96a9822fa134450197dd454b1478a193">BONUS</a> 10000</td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a5e75221c779d618eab81e096f37e32ce">NBPAIRS</a> 7</td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#ae646250fd59311356c7e5722a81c3a96">TURN</a> 3</td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#ad1bd6eabac419670ddd3c9ed82145988">MAXLOOP</a> 30</td></tr>
</table>
-<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
-<div class="textblock"><p>energy constants </p>
-</div><hr/><h2>Macro Definition Documentation</h2>
-<a class="anchor" id="ab1e4a8d82f24ed5db01dde5f25269cf1"></a>
+<hr/><a name="_details"></a><h2>Detailed Description</h2>
+<p>energy constants </p>
+<hr/><h2>Define Documentation</h2>
+<a class="anchor" id="ab1e4a8d82f24ed5db01dde5f25269cf1"></a><!-- doxytag: member="energy_const.h::GASCONST" ref="ab1e4a8d82f24ed5db01dde5f25269cf1" args="" -->
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
- <td class="memname">#define GASCONST   1.98717 /* in [cal/K] */</td>
+ <td class="memname">#define GASCONST 1.98717</td>
</tr>
</table>
-</div><div class="memdoc">
+</div>
+<div class="memdoc">
<p>The gas constant </p>
</div>
</div>
-<a class="anchor" id="a307c72605e3713972b4f4fb2d53ea20e"></a>
+<a class="anchor" id="a307c72605e3713972b4f4fb2d53ea20e"></a><!-- doxytag: member="energy_const.h::K0" ref="a307c72605e3713972b4f4fb2d53ea20e" args="" -->
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
- <td class="memname">#define K0   273.15</td>
+ <td class="memname">#define K0 273.15</td>
</tr>
</table>
-</div><div class="memdoc">
+</div>
+<div class="memdoc">
<p>0 deg Celsius in Kelvin </p>
</div>
</div>
-<a class="anchor" id="a12c2040f25d8e3a7b9e1c2024c618cb6"></a>
+<a class="anchor" id="a12c2040f25d8e3a7b9e1c2024c618cb6"></a><!-- doxytag: member="energy_const.h::INF" ref="a12c2040f25d8e3a7b9e1c2024c618cb6" args="" -->
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
- <td class="memname">#define INF   10000000 /* (INT_MAX/10) */</td>
+ <td class="memname">#define INF 10000000</td>
</tr>
</table>
-</div><div class="memdoc">
+</div>
+<div class="memdoc">
<p>Infinity as used in minimization routines </p>
</div>
</div>
-<a class="anchor" id="a5064c29ab2d1e20c2304b3c67562774d"></a>
+<a class="anchor" id="a5064c29ab2d1e20c2304b3c67562774d"></a><!-- doxytag: member="energy_const.h::FORBIDDEN" ref="a5064c29ab2d1e20c2304b3c67562774d" args="" -->
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
- <td class="memname">#define FORBIDDEN   9999</td>
+ <td class="memname">#define FORBIDDEN 9999</td>
</tr>
</table>
-</div><div class="memdoc">
+</div>
+<div class="memdoc">
<p>forbidden </p>
</div>
</div>
-<a class="anchor" id="a96a9822fa134450197dd454b1478a193"></a>
+<a class="anchor" id="a96a9822fa134450197dd454b1478a193"></a><!-- doxytag: member="energy_const.h::BONUS" ref="a96a9822fa134450197dd454b1478a193" args="" -->
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
- <td class="memname">#define BONUS   10000</td>
+ <td class="memname">#define BONUS 10000</td>
</tr>
</table>
-</div><div class="memdoc">
+</div>
+<div class="memdoc">
<p>bonus contribution </p>
</div>
</div>
-<a class="anchor" id="a5e75221c779d618eab81e096f37e32ce"></a>
+<a class="anchor" id="a5e75221c779d618eab81e096f37e32ce"></a><!-- doxytag: member="energy_const.h::NBPAIRS" ref="a5e75221c779d618eab81e096f37e32ce" args="" -->
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
- <td class="memname">#define NBPAIRS   7</td>
+ <td class="memname">#define NBPAIRS 7</td>
</tr>
</table>
-</div><div class="memdoc">
+</div>
+<div class="memdoc">
<p>The number of distinguishable base pairs </p>
</div>
</div>
-<a class="anchor" id="ae646250fd59311356c7e5722a81c3a96"></a>
+<a class="anchor" id="ae646250fd59311356c7e5722a81c3a96"></a><!-- doxytag: member="energy_const.h::TURN" ref="ae646250fd59311356c7e5722a81c3a96" args="" -->
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
- <td class="memname">#define TURN   3</td>
+ <td class="memname">#define TURN 3</td>
</tr>
</table>
-</div><div class="memdoc">
+</div>
+<div class="memdoc">
<p>The minimum loop length </p>
</div>
</div>
-<a class="anchor" id="ad1bd6eabac419670ddd3c9ed82145988"></a>
+<a class="anchor" id="ad1bd6eabac419670ddd3c9ed82145988"></a><!-- doxytag: member="energy_const.h::MAXLOOP" ref="ad1bd6eabac419670ddd3c9ed82145988" args="" -->
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
- <td class="memname">#define MAXLOOP   30</td>
+ <td class="memname">#define MAXLOOP 30</td>
</tr>
</table>
-</div><div class="memdoc">
+</div>
+<div class="memdoc">
<p>The maximum loop length </p>
</div>
</div>
-</div><!-- contents -->
-</div><!-- doc-content -->
-<!-- start footer part -->
-<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
- <ul>
- <li class="navelem"><a class="el" href="dir_d72344b28b4f2089ce25682c4e6eba22.html">H</a></li><li class="navelem"><a class="el" href="energy__const_8h.html">energy_const.h</a></li>
- <li class="footer">Generated on Wed Jul 24 2013 13:38:58 for RNAlib-2.1.2 by
- <a href="http://www.doxygen.org/index.html">
- <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
- </ul>
</div>
+<hr size="1"/><address style="text-align: right;"><small>Generated on 11 Apr 2017 for RNAlib-2.1.2 by
+<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
</body>
</html>
git://source.jalview.org / jabaws.git / blobdiff