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-<div class="title">energy_const.h</div> </div>
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-<div class="contents">
-<a href="energy__const_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_ENERGY_CONST_H__</span></div>
-<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_ENERGY_CONST_H__</span></div>
-<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="preprocessor">#include <limits.h></span></div>
-<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> </div>
-<div class="line"><a name="l00012"></a><span class="lineno"><a class="code" href="energy__const_8h.html#ab1e4a8d82f24ed5db01dde5f25269cf1"> 12</a></span> <span class="preprocessor">#define GASCONST 1.98717 </span><span class="comment">/* in [cal/K] */</span><span class="preprocessor"></span></div>
-<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00014"></a><span class="lineno"><a class="code" href="energy__const_8h.html#a307c72605e3713972b4f4fb2d53ea20e"> 14</a></span> <span class="preprocessor">#define K0 273.15</span></div>
-<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00016"></a><span class="lineno"><a class="code" href="energy__const_8h.html#a12c2040f25d8e3a7b9e1c2024c618cb6"> 16</a></span> <span class="preprocessor">#define INF 10000000 </span><span class="comment">/* (INT_MAX/10) */</span><span class="preprocessor"></span></div>
-<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#define EMAX (INF/10)</span></div>
-<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00020"></a><span class="lineno"><a class="code" href="energy__const_8h.html#a5064c29ab2d1e20c2304b3c67562774d"> 20</a></span> <span class="preprocessor">#define FORBIDDEN 9999</span></div>
-<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00022"></a><span class="lineno"><a class="code" href="energy__const_8h.html#a96a9822fa134450197dd454b1478a193"> 22</a></span> <span class="preprocessor">#define BONUS 10000</span></div>
-<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00024"></a><span class="lineno"><a class="code" href="energy__const_8h.html#a5e75221c779d618eab81e096f37e32ce"> 24</a></span> <span class="preprocessor">#define NBPAIRS 7</span></div>
-<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00026"></a><span class="lineno"><a class="code" href="energy__const_8h.html#ae646250fd59311356c7e5722a81c3a96"> 26</a></span> <span class="preprocessor">#define TURN 3</span></div>
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-<div class="line"><a name="l00028"></a><span class="lineno"><a class="code" href="energy__const_8h.html#ad1bd6eabac419670ddd3c9ed82145988"> 28</a></span> <span class="preprocessor">#define MAXLOOP 30</span></div>
-<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="preprocessor">#define VRNA_GQUAD_MISMATCH_PENALTY 300 </span><span class="comment">/* penalty for incompatible nucleotides in an alignment that destruct a gquad layer */</span><span class="preprocessor"></span></div>
-<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="preprocessor"></span><span class="preprocessor">#define VRNA_GQUAD_MISMATCH_NUM_ALI 1 </span><span class="comment">/* maximum number of mismatching sequences in the alignment when gquad should be formed */</span><span class="preprocessor"></span></div>
-<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="preprocessor">#endif</span></div>
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- <li class="navelem"><a class="el" href="dir_d72344b28b4f2089ce25682c4e6eba22.html">H</a></li><li class="navelem"><a class="el" href="energy__const_8h.html">energy_const.h</a></li>
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- <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
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+<h1>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy_const.h</h1><a href="energy__const_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_ENERGY_CONST_H__</span>
+<a name="l00002"></a>00002 <span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_ENERGY_CONST_H__</span>
+<a name="l00003"></a>00003 <span class="preprocessor"></span>
+<a name="l00004"></a>00004 <span class="preprocessor">#include <limits.h></span>
+<a name="l00005"></a>00005
+<a name="l00012"></a><a class="code" href="energy__const_8h.html#ab1e4a8d82f24ed5db01dde5f25269cf1">00012</a> <span class="preprocessor">#define GASCONST 1.98717 </span><span class="comment">/* in [cal/K] */</span>
+<a name="l00013"></a>00013
+<a name="l00014"></a><a class="code" href="energy__const_8h.html#a307c72605e3713972b4f4fb2d53ea20e">00014</a> <span class="preprocessor">#define K0 273.15</span>
+<a name="l00015"></a>00015 <span class="preprocessor"></span>
+<a name="l00016"></a><a class="code" href="energy__const_8h.html#a12c2040f25d8e3a7b9e1c2024c618cb6">00016</a> <span class="preprocessor">#define INF 10000000 </span><span class="comment">/* (INT_MAX/10) */</span>
+<a name="l00017"></a>00017
+<a name="l00018"></a>00018 <span class="preprocessor">#define EMAX (INF/10)</span>
+<a name="l00019"></a>00019 <span class="preprocessor"></span>
+<a name="l00020"></a><a class="code" href="energy__const_8h.html#a5064c29ab2d1e20c2304b3c67562774d">00020</a> <span class="preprocessor">#define FORBIDDEN 9999</span>
+<a name="l00021"></a>00021 <span class="preprocessor"></span>
+<a name="l00022"></a><a class="code" href="energy__const_8h.html#a96a9822fa134450197dd454b1478a193">00022</a> <span class="preprocessor">#define BONUS 10000</span>
+<a name="l00023"></a>00023 <span class="preprocessor"></span>
+<a name="l00024"></a><a class="code" href="energy__const_8h.html#a5e75221c779d618eab81e096f37e32ce">00024</a> <span class="preprocessor">#define NBPAIRS 7</span>
+<a name="l00025"></a>00025 <span class="preprocessor"></span>
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+<a name="l00027"></a>00027 <span class="preprocessor"></span>
+<a name="l00028"></a><a class="code" href="energy__const_8h.html#ad1bd6eabac419670ddd3c9ed82145988">00028</a> <span class="preprocessor">#define MAXLOOP 30</span>
+<a name="l00029"></a>00029 <span class="preprocessor"></span>
+<a name="l00030"></a>00030 <span class="preprocessor">#define VRNA_GQUAD_MISMATCH_PENALTY 300 </span><span class="comment">/* penalty for incompatible nucleotides in an alignment that destruct a gquad layer */</span>
+<a name="l00031"></a>00031 <span class="preprocessor">#define VRNA_GQUAD_MISMATCH_NUM_ALI 1 </span><span class="comment">/* maximum number of mismatching sequences in the alignment when gquad should be formed */</span>
+<a name="l00032"></a>00032
+<a name="l00033"></a>00033 <span class="preprocessor">#endif</span>
+</pre></div></div>
+<hr size="1"/><address style="text-align: right;"><small>Generated on 11 Apr 2017 for RNAlib-2.1.2 by
+<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
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