JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.
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+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<title>RNAlib-2.1.2: ViennaRNA Package core - RNAlib</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
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+<body>
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+      <li class="current"><a href="main.html"><span>Main&nbsp;Page</span></a></li>
+      <li><a href="pages.html"><span>Related&nbsp;Pages</span></a></li>
+      <li><a href="modules.html"><span>Modules</span></a></li>
+      <li><a href="annotated.html"><span>Data&nbsp;Structures</span></a></li>
+      <li><a href="files.html"><span>Files</span></a></li>
+    </ul>
+  </div>
+</div>
+<div class="contents">
+<h1>ViennaRNA Package core - RNAlib</h1><p><br/>
+</p>
+ <center> <h2>A Library for folding and comparing RNA secondary structures</h2>
+ </center> <p><br/>
+</p>
+<dl class="date"><dt><b>Date:</b></dt><dd>1994-2012 </dd></dl>
+<dl class="author"><dt><b>Authors:</b></dt><dd>Ivo Hofacker, Peter Stadler, Ronny Lorenz and many more</dd></dl>
+<h3>Table of Contents</h3>
+<hr/>
+<ul>
+<li><a class="el" href="main.html#mp_intro">Introduction</a> </li>
+<li><a class="el" href="group__folding__routines.html">RNA Secondary Structure Folding</a> </li>
+<li><a class="el" href="mp_parse.html">Parsing and Comparing - Functions to Manipulate Structures</a> </li>
+<li><a class="el" href="mp_utils.html">Utilities - Odds and Ends</a> </li>
+<li><a class="el" href="mp_example.html">Example - A Small Example Program</a> </li>
+<li>mp_ref</li>
+</ul>
+<hr/>
+<h2><a class="anchor" id="mp_intro">
+Introduction</a></h2>
+<p>The core of the Vienna RNA Package ( lorenz:2011,  hofacker:1994) is formed by a collection of routines for the prediction and comparison of RNA secondary structures. These routines can be accessed through stand-alone programs, such as RNAfold, RNAdistance etc., which should be sufficient for most users. For those who wish to develop their own programs we provide a library which can be linked to your own code.</p>
+<p>This document describes the library and will be primarily useful to programmers. However, it also contains details about the implementation that may be of interest to advanced users. The stand-alone programs are described in separate man pages. The latest version of the package including source code and html versions of the documentation can be found at <br/>
+<br/>
+ <a href="http://www.tbi.univie.ac.at/~ivo/RNA/">http://www.tbi.univie.ac.at/~ivo/RNA/</a> </p>
+</div>
+<hr size="1"/><address style="text-align: right;"><small>Generated on 11 Apr 2017 for RNAlib-2.1.2 by&nbsp;
+<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
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