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-<div class="title">plot_layouts.h</div> </div>
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-<a href="plot__layouts_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> </div>
-<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_PLOT_LAYOUTS_H__</span></div>
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-<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> </div>
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-<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor"></span><span class="preprocessor">#define PIHALF PI/2.</span></div>
-<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> </div>
-<div class="line"><a name="l00029"></a><span class="lineno"><a class="code" href="plot__layouts_8h.html#ae6d17b9f0a53cf5205a9181e0f8422e9"> 29</a></span> <span class="preprocessor">#define VRNA_PLOT_TYPE_SIMPLE 0</span></div>
-<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00039"></a><span class="lineno"><a class="code" href="plot__layouts_8h.html#a94d4c863ecac2f220f76658afb92f964"> 39</a></span> <span class="preprocessor">#define VRNA_PLOT_TYPE_NAVIEW 1</span></div>
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-<div class="line"><a name="l00049"></a><span class="lineno"><a class="code" href="plot__layouts_8h.html#a8c9eac631348da92136c8363ecdd9fb9"> 49</a></span> <span class="preprocessor">#define VRNA_PLOT_TYPE_CIRCULAR 2</span></div>
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-<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <span class="keywordtype">float</span> *Y);</div>
-<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> </div>
-<div class="line"><a name="l00101"></a><span class="lineno"> 101</span> <span class="keywordtype">int</span> <a class="code" href="plot__layouts_8h.html#ac4ea13d35308f09940178d2b05a248c2" title="Calculate nucleotide coordinates for Circular Plot">simple_circplot_coordinates</a>(<span class="keywordtype">short</span> *pair_table,</div>
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-<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> <span class="preprocessor">#endif</span></div>
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- <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
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+<h1>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/plot_layouts.h</h1><a href="plot__layouts_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001
+<a name="l00009"></a>00009 <span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_PLOT_LAYOUTS_H__</span>
+<a name="l00010"></a>00010 <span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_PLOT_LAYOUTS_H__</span>
+<a name="l00011"></a>00011 <span class="preprocessor"></span>
+<a name="l00012"></a>00012 <span class="preprocessor">#include "<a class="code" href="data__structures_8h.html" title="All datastructures and typedefs shared among the Vienna RNA Package can be found...">data_structures.h</a>"</span>
+<a name="l00013"></a>00013 <span class="preprocessor">#include "<a class="code" href="naview_8h.html">naview.h</a>"</span>
+<a name="l00014"></a>00014
+<a name="l00015"></a>00015 <span class="preprocessor">#ifndef PI</span>
+<a name="l00016"></a>00016 <span class="preprocessor"></span><span class="preprocessor">#define PI 3.141592654</span>
+<a name="l00017"></a>00017 <span class="preprocessor"></span><span class="preprocessor">#endif</span>
+<a name="l00018"></a>00018 <span class="preprocessor"></span><span class="preprocessor">#define PIHALF PI/2.</span>
+<a name="l00019"></a>00019 <span class="preprocessor"></span>
+<a name="l00020"></a>00020
+<a name="l00029"></a><a class="code" href="plot__layouts_8h.html#ae6d17b9f0a53cf5205a9181e0f8422e9">00029</a> <span class="preprocessor">#define VRNA_PLOT_TYPE_SIMPLE 0</span>
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+<a name="l00039"></a><a class="code" href="plot__layouts_8h.html#a94d4c863ecac2f220f76658afb92f964">00039</a> <span class="preprocessor">#define VRNA_PLOT_TYPE_NAVIEW 1</span>
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+<a name="l00049"></a><a class="code" href="plot__layouts_8h.html#a8c9eac631348da92136c8363ecdd9fb9">00049</a> <span class="preprocessor">#define VRNA_PLOT_TYPE_CIRCULAR 2</span>
+<a name="l00050"></a>00050 <span class="preprocessor"></span>
+<a name="l00051"></a>00051
+<a name="l00064"></a>00064 <span class="keyword">extern</span> <span class="keywordtype">int</span> <a class="code" href="plot__layouts_8h.html#a5964c4581431b098b80027d6e14dcdd4" title="Switch for changing the secondary structure layout algorithm.">rna_plot_type</a>;
+<a name="l00065"></a>00065
+<a name="l00077"></a>00077 <span class="keywordtype">int</span> <a class="code" href="plot__layouts_8h.html#af4b9173e7d3fd361c3c85e6def194123" title="Calculate nucleotide coordinates for secondary structure plot the Simple way.">simple_xy_coordinates</a>(<span class="keywordtype">short</span> *pair_table,
+<a name="l00078"></a>00078 <span class="keywordtype">float</span> *X,
+<a name="l00079"></a>00079 <span class="keywordtype">float</span> *Y);
+<a name="l00080"></a>00080
+<a name="l00101"></a>00101 <span class="keywordtype">int</span> <a class="code" href="plot__layouts_8h.html#ac4ea13d35308f09940178d2b05a248c2" title="Calculate nucleotide coordinates for Circular Plot.">simple_circplot_coordinates</a>(<span class="keywordtype">short</span> *pair_table,
+<a name="l00102"></a>00102 <span class="keywordtype">float</span> *x,
+<a name="l00103"></a>00103 <span class="keywordtype">float</span> *y);
+<a name="l00104"></a>00104
+<a name="l00105"></a>00105
+<a name="l00106"></a>00106 <span class="preprocessor">#endif</span>
+</pre></div></div>
+<hr size="1"/><address style="text-align: right;"><small>Generated on 11 Apr 2017 for RNAlib-2.1.2 by
+<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
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