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-<div class="title">profiledist.h</div> </div>
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-<a href="profiledist_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_PROFILEDIST_H__</span></div>
-<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_PROFILEDIST_H__</span></div>
-<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="preprocessor">#ifdef __GNUC__</span></div>
-<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="preprocessor"></span><span class="preprocessor">#define DEPRECATED(func) func __attribute__ ((deprecated))</span></div>
-<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="preprocessor"></span><span class="preprocessor">#else</span></div>
-<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor"></span><span class="preprocessor">#define DEPRECATED(func) func</span></div>
-<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor"></span><span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "<a class="code" href="data__structures_8h.html" title="All datastructures and typedefs shared among the Vienna RNA Package can be found here.">data_structures.h</a>"</span></div>
-<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> </div>
-<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="keywordtype">float</span> <a class="code" href="profiledist_8h.html#abe75e90e00a1e5dd8862944ed53dad5d" title="Align the 2 probability profiles T1, T2 .">profile_edit_distance</a>(<span class="keyword">const</span> <span class="keywordtype">float</span> *T1,</div>
-<div class="line"><a name="l00021"></a><span class="lineno"> 21</span>  <span class="keyword">const</span> <span class="keywordtype">float</span> *T2);</div>
-<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> </div>
-<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="keywordtype">float</span> *<a class="code" href="profiledist_8h.html#a8822fd5268be115c6e6cdc92009436cc" title="condense pair probability matrix into a vector containing probabilities for unpaired, upstream paired and downstream paired.">Make_bp_profile_bppm</a>(FLT_OR_DBL *bppm,</div>
-<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="keywordtype">int</span> length);</div>
-<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> </div>
-<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="keywordtype">void</span> <a class="code" href="profiledist_8h.html#a8e0b4fe3698b3502945116ecc0ba6160" title="print string representation of probability profile">print_bppm</a>(<span class="keyword">const</span> <span class="keywordtype">float</span> *T);</div>
-<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> </div>
-<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="keywordtype">void</span> <a class="code" href="profiledist_8h.html#a9b0b84a5a45761bf42d7c835dcdb3b85" title="free space allocated in Make_bp_profile">free_profile</a>(<span class="keywordtype">float</span> *T);</div>
-<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> </div>
-<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> DEPRECATED(<span class="keywordtype">float</span> *<a class="code" href="profiledist_8h.html#a904c7eaf4a2413567c00ac4891749d18">Make_bp_profile</a>(<span class="keywordtype">int</span> length));</div>
-<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> </div>
-<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> <span class="preprocessor">#endif</span></div>
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- <li class="navelem"><a class="el" href="dir_d72344b28b4f2089ce25682c4e6eba22.html">H</a></li><li class="navelem"><a class="el" href="profiledist_8h.html">profiledist.h</a></li>
- <li class="footer">Generated on Wed Jul 24 2013 13:38:56 for RNAlib-2.1.2 by
- <a href="http://www.doxygen.org/index.html">
- <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
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+<h1>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/profiledist.h</h1><a href="profiledist_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_PROFILEDIST_H__</span>
+<a name="l00002"></a>00002 <span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_PROFILEDIST_H__</span>
+<a name="l00003"></a>00003 <span class="preprocessor"></span>
+<a name="l00004"></a>00004 <span class="preprocessor">#ifdef __GNUC__</span>
+<a name="l00005"></a>00005 <span class="preprocessor"></span><span class="preprocessor">#define DEPRECATED(func) func __attribute__ ((deprecated))</span>
+<a name="l00006"></a>00006 <span class="preprocessor"></span><span class="preprocessor">#else</span>
+<a name="l00007"></a>00007 <span class="preprocessor"></span><span class="preprocessor">#define DEPRECATED(func) func</span>
+<a name="l00008"></a>00008 <span class="preprocessor"></span><span class="preprocessor">#endif</span>
+<a name="l00009"></a>00009 <span class="preprocessor"></span>
+<a name="l00010"></a>00010 <span class="preprocessor">#include "<a class="code" href="data__structures_8h.html" title="All datastructures and typedefs shared among the Vienna RNA Package can be found...">data_structures.h</a>"</span>
+<a name="l00011"></a>00011
+<a name="l00020"></a>00020 <span class="keywordtype">float</span> <a class="code" href="profiledist_8h.html#abe75e90e00a1e5dd8862944ed53dad5d" title="Align the 2 probability profiles T1, T2 .">profile_edit_distance</a>(<span class="keyword">const</span> <span class="keywordtype">float</span> *T1,
+<a name="l00021"></a>00021 <span class="keyword">const</span> <span class="keywordtype">float</span> *T2);
+<a name="l00022"></a>00022
+<a name="l00033"></a>00033 <span class="keywordtype">float</span> *<a class="code" href="profiledist_8h.html#a8822fd5268be115c6e6cdc92009436cc" title="condense pair probability matrix into a vector containing probabilities for unpaired...">Make_bp_profile_bppm</a>(FLT_OR_DBL *bppm,
+<a name="l00034"></a>00034 <span class="keywordtype">int</span> length);
+<a name="l00035"></a>00035
+<a name="l00039"></a>00039 <span class="keywordtype">void</span> <a class="code" href="profiledist_8h.html#a8e0b4fe3698b3502945116ecc0ba6160" title="print string representation of probability profile">print_bppm</a>(<span class="keyword">const</span> <span class="keywordtype">float</span> *T);
+<a name="l00040"></a>00040
+<a name="l00046"></a>00046 <span class="keywordtype">void</span> <a class="code" href="profiledist_8h.html#a9b0b84a5a45761bf42d7c835dcdb3b85" title="free space allocated in Make_bp_profile">free_profile</a>(<span class="keywordtype">float</span> *T);
+<a name="l00047"></a>00047
+<a name="l00056"></a>00056 DEPRECATED(<span class="keywordtype">float</span> *<a class="code" href="profiledist_8h.html#a904c7eaf4a2413567c00ac4891749d18">Make_bp_profile</a>(<span class="keywordtype">int</span> length));
+<a name="l00057"></a>00057
+<a name="l00058"></a>00058 <span class="preprocessor">#endif</span>
+</pre></div></div>
+<hr size="1"/><address style="text-align: right;"><small>Generated on 11 Apr 2017 for RNAlib-2.1.2 by
+<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
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