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+<h1>pf_paramT Struct Reference</h1><!-- doxytag: class="pf_paramT" -->
<p>The datastructure that contains temperature scaled Boltzmann weights of the energy parameters.
- <a href="structpf__paramT.html#details">More...</a></p>
-<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
- <img id="dynsection-0-trigger" src="closed.png" alt="+"/> Collaboration diagram for pf_paramT:</div>
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<div class="center"><img src="structpf__paramT__coll__graph.png" border="0" usemap="#pf__paramT_coll__map" alt="Collaboration graph"/></div>
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-<area shape="rect" id="node2" href="structmodel__detailsT.html" title="The data structure that contains the complete model details used throughout the calculations." alt="" coords="5,5,123,32"/></map>
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<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
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-Data Fields</h2></td></tr>
-<tr class="memitem:aef40322e7ca1adbd9b438aeda0352e8f"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="aef40322e7ca1adbd9b438aeda0352e8f"></a>
-double </td><td class="memItemRight" valign="bottom"><a class="el" href="structpf__paramT.html#aef40322e7ca1adbd9b438aeda0352e8f">pf_scale</a></td></tr>
-<tr class="memdesc:aef40322e7ca1adbd9b438aeda0352e8f"><td class="mdescLeft"> </td><td class="mdescRight">Scaling factor to avoid over-/underflows. <br/></td></tr>
-<tr class="memitem:aa0e11e9f1f6e212640baf40d7195a014"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="aa0e11e9f1f6e212640baf40d7195a014"></a>
-double </td><td class="memItemRight" valign="bottom"><a class="el" href="structpf__paramT.html#aa0e11e9f1f6e212640baf40d7195a014">temperature</a></td></tr>
-<tr class="memdesc:aa0e11e9f1f6e212640baf40d7195a014"><td class="mdescLeft"> </td><td class="mdescRight">Temperature used for loop contribution scaling. <br/></td></tr>
-<tr class="memitem:a3d2af9040acfa08295efb50f0219149d"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="structpf__paramT.html#a3d2af9040acfa08295efb50f0219149d">alpha</a></td></tr>
-<tr class="memdesc:a3d2af9040acfa08295efb50f0219149d"><td class="mdescLeft"> </td><td class="mdescRight">Scaling factor for the thermodynamic temperature. <a href="#a3d2af9040acfa08295efb50f0219149d"></a><br/></td></tr>
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-<tr class="memdesc:a43ec875779c5e7c8bf5fa7e837ec6d09"><td class="mdescLeft"> </td><td class="mdescRight">Model details to be used in the recursions. <br/></td></tr>
+<table border="0" cellpadding="0" cellspacing="0">
+<tr><td colspan="2"><h2>Data Fields</h2></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="aef40322e7ca1adbd9b438aeda0352e8f"></a><!-- doxytag: member="pf_paramT::pf_scale" ref="aef40322e7ca1adbd9b438aeda0352e8f" args="" -->
+double </td><td class="memItemRight" valign="bottom"><a class="el" href="structpf__paramT.html#aef40322e7ca1adbd9b438aeda0352e8f">pf_scale</a></td></tr>
+<tr><td class="mdescLeft"> </td><td class="mdescRight">Scaling factor to avoid over-/underflows. <br/></td></tr>
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+<tr><td class="mdescLeft"> </td><td class="mdescRight">Temperature used for loop contribution scaling. <br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="structpf__paramT.html#a3d2af9040acfa08295efb50f0219149d">alpha</a></td></tr>
+<tr><td class="mdescLeft"> </td><td class="mdescRight">Scaling factor for the thermodynamic temperature. <a href="#a3d2af9040acfa08295efb50f0219149d"></a><br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a43ec875779c5e7c8bf5fa7e837ec6d09"></a><!-- doxytag: member="pf_paramT::model_details" ref="a43ec875779c5e7c8bf5fa7e837ec6d09" args="" -->
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+<tr><td class="mdescLeft"> </td><td class="mdescRight">Model details to be used in the recursions. <br/></td></tr>
</table>
-<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
-<div class="textblock"><p>The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. </p>
-</div><hr/><h2>Field Documentation</h2>
-<a class="anchor" id="a3d2af9040acfa08295efb50f0219149d"></a>
+<hr/><a name="_details"></a><h2>Detailed Description</h2>
+<p>The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. </p>
+<hr/><h2>Field Documentation</h2>
+<a class="anchor" id="a3d2af9040acfa08295efb50f0219149d"></a><!-- doxytag: member="pf_paramT::alpha" ref="a3d2af9040acfa08295efb50f0219149d" args="" -->
<div class="memitem">
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- <td class="memname">double pf_paramT::alpha</td>
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+</div>
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<p>Scaling factor for the thermodynamic temperature. </p>
<p>This allows for temperature scaling in Boltzmann factors independently from the energy contributions. The resulting Boltzmann factors are then computed by <img class="formulaInl" alt="$ e^{-E/(\alpha \cdot K \cdot T)} $" src="form_2.png"/> </p>
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<hr/>The documentation for this struct was generated from the following file:<ul>
-<li>/home/mescalin/ronny/public_html/programs/ViennaRNA/H/<a class="el" href="data__structures_8h_source.html">data_structures.h</a></li>
+<li>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/<a class="el" href="data__structures_8h_source.html">data_structures.h</a></li>
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