JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.
[jabaws.git] / binaries / src / ViennaRNA / doc / html / structpu__contrib.html
index b799772..4a70919 100644 (file)
 <html xmlns="http://www.w3.org/1999/xhtml">
 <head>
 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <title>RNAlib-2.1.2: pu_contrib Struct Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
-<link href="navtree.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="resize.js"></script>
-<script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript">
-  $(document).ready(initResizable);
-</script>
-<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen.css" rel="stylesheet" type="text/css"/>
 </head>
 <body>
-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td style="padding-left: 0.5em;">
-   <div id="projectname">RNAlib-2.1.2
-   </div>
-  </td>
- </tr>
- </tbody>
-</table>
-</div>
-<!-- end header part -->
-<!-- Generated by Doxygen 1.8.1.1 -->
-  <div id="navrow1" class="tabs">
-    <ul class="tablist">
-      <li><a href="index.html"><span>Main&#160;Page</span></a></li>
-      <li><a href="pages.html"><span>Related&#160;Pages</span></a></li>
+<!-- Generated by Doxygen 1.6.1 -->
+<script type="text/javascript">
+<!--
+function changeDisplayState (e){
+  var num=this.id.replace(/[^[0-9]/g,'');
+  var button=this.firstChild;
+  var sectionDiv=document.getElementById('dynsection'+num);
+  if (sectionDiv.style.display=='none'||sectionDiv.style.display==''){
+    sectionDiv.style.display='block';
+    button.src='open.gif';
+  }else{
+    sectionDiv.style.display='none';
+    button.src='closed.gif';
+  }
+}
+function initDynSections(){
+  var divs=document.getElementsByTagName('div');
+  var sectionCounter=1;
+  for(var i=0;i<divs.length-1;i++){
+    if(divs[i].className=='dynheader'&&divs[i+1].className=='dynsection'){
+      var header=divs[i];
+      var section=divs[i+1];
+      var button=header.firstChild;
+      if (button!='IMG'){
+        divs[i].insertBefore(document.createTextNode(' '),divs[i].firstChild);
+        button=document.createElement('img');
+        divs[i].insertBefore(button,divs[i].firstChild);
+      }
+      header.style.cursor='pointer';
+      header.onclick=changeDisplayState;
+      header.id='dynheader'+sectionCounter;
+      button.src='closed.gif';
+      section.id='dynsection'+sectionCounter;
+      section.style.display='none';
+      section.style.marginLeft='14px';
+      sectionCounter++;
+    }
+  }
+}
+window.onload = initDynSections;
+-->
+</script>
+<div class="navigation" id="top">
+  <div class="tabs">
+    <ul>
+      <li><a href="main.html"><span>Main&nbsp;Page</span></a></li>
+      <li><a href="pages.html"><span>Related&nbsp;Pages</span></a></li>
       <li><a href="modules.html"><span>Modules</span></a></li>
-      <li class="current"><a href="annotated.html"><span>Data&#160;Structures</span></a></li>
+      <li class="current"><a href="annotated.html"><span>Data&nbsp;Structures</span></a></li>
       <li><a href="files.html"><span>Files</span></a></li>
     </ul>
   </div>
-  <div id="navrow2" class="tabs2">
-    <ul class="tablist">
-      <li><a href="annotated.html"><span>Data&#160;Structures</span></a></li>
-      <li><a href="classes.html"><span>Data&#160;Structure&#160;Index</span></a></li>
-      <li><a href="functions.html"><span>Data&#160;Fields</span></a></li>
+  <div class="tabs">
+    <ul>
+      <li><a href="annotated.html"><span>Data&nbsp;Structures</span></a></li>
+      <li><a href="classes.html"><span>Data&nbsp;Structure&nbsp;Index</span></a></li>
+      <li><a href="functions.html"><span>Data&nbsp;Fields</span></a></li>
     </ul>
   </div>
-</div><!-- top -->
-<div id="side-nav" class="ui-resizable side-nav-resizable">
-  <div id="nav-tree">
-    <div id="nav-tree-contents">
-    </div>
-  </div>
-  <div id="splitbar" style="-moz-user-select:none;" 
-       class="ui-resizable-handle">
-  </div>
 </div>
-<script type="text/javascript">
-$(document).ready(function(){initNavTree('structpu__contrib.html','');});
-</script>
-<div id="doc-content">
-<div class="header">
-  <div class="summary">
-<a href="#pub-attribs">Data Fields</a>  </div>
-  <div class="headertitle">
-<div class="title">pu_contrib Struct Reference</div>  </div>
-</div><!--header-->
 <div class="contents">
-
+<h1>pu_contrib Struct Reference</h1><!-- doxytag: class="pu_contrib" -->
 <p>contributions to p_u  
- <a href="structpu__contrib.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2><a name="pub-attribs"></a>
-Data Fields</h2></td></tr>
-<tr class="memitem:ac9034ac9a84ed0647587659d6e9be1e8"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ac9034ac9a84ed0647587659d6e9be1e8"></a>
-double **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#ac9034ac9a84ed0647587659d6e9be1e8">H</a></td></tr>
-<tr class="memdesc:ac9034ac9a84ed0647587659d6e9be1e8"><td class="mdescLeft">&#160;</td><td class="mdescRight">hairpin loops <br/></td></tr>
-<tr class="memitem:a8ca0da20536780589fb3e3472ca0581f"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a8ca0da20536780589fb3e3472ca0581f"></a>
-double **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#a8ca0da20536780589fb3e3472ca0581f">I</a></td></tr>
-<tr class="memdesc:a8ca0da20536780589fb3e3472ca0581f"><td class="mdescLeft">&#160;</td><td class="mdescRight">interior loops <br/></td></tr>
-<tr class="memitem:a1222ebf74f426bbcd843dcc325da207b"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a1222ebf74f426bbcd843dcc325da207b"></a>
-double **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#a1222ebf74f426bbcd843dcc325da207b">M</a></td></tr>
-<tr class="memdesc:a1222ebf74f426bbcd843dcc325da207b"><td class="mdescLeft">&#160;</td><td class="mdescRight">multi loops <br/></td></tr>
-<tr class="memitem:accb192ba6b4b91a1cb2f8080934fd428"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="accb192ba6b4b91a1cb2f8080934fd428"></a>
-double **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#accb192ba6b4b91a1cb2f8080934fd428">E</a></td></tr>
-<tr class="memdesc:accb192ba6b4b91a1cb2f8080934fd428"><td class="mdescLeft">&#160;</td><td class="mdescRight">exterior loop <br/></td></tr>
-<tr class="memitem:a33d5ada6e861db0c81aa3d5b2989262e"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a33d5ada6e861db0c81aa3d5b2989262e"></a>
-int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#a33d5ada6e861db0c81aa3d5b2989262e">length</a></td></tr>
-<tr class="memdesc:a33d5ada6e861db0c81aa3d5b2989262e"><td class="mdescLeft">&#160;</td><td class="mdescRight">length of the input sequence <br/></td></tr>
-<tr class="memitem:a403c1c7f20beeeffba7632fac0cfcbff"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a403c1c7f20beeeffba7632fac0cfcbff"></a>
-int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#a403c1c7f20beeeffba7632fac0cfcbff">w</a></td></tr>
-<tr class="memdesc:a403c1c7f20beeeffba7632fac0cfcbff"><td class="mdescLeft">&#160;</td><td class="mdescRight">longest unpaired region <br/></td></tr>
+<a href="#_details">More...</a></p>
+<table border="0" cellpadding="0" cellspacing="0">
+<tr><td colspan="2"><h2>Data Fields</h2></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ac9034ac9a84ed0647587659d6e9be1e8"></a><!-- doxytag: member="pu_contrib::H" ref="ac9034ac9a84ed0647587659d6e9be1e8" args="" -->
+double **&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#ac9034ac9a84ed0647587659d6e9be1e8">H</a></td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">hairpin loops <br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a8ca0da20536780589fb3e3472ca0581f"></a><!-- doxytag: member="pu_contrib::I" ref="a8ca0da20536780589fb3e3472ca0581f" args="" -->
+double **&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#a8ca0da20536780589fb3e3472ca0581f">I</a></td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">interior loops <br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a1222ebf74f426bbcd843dcc325da207b"></a><!-- doxytag: member="pu_contrib::M" ref="a1222ebf74f426bbcd843dcc325da207b" args="" -->
+double **&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#a1222ebf74f426bbcd843dcc325da207b">M</a></td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">multi loops <br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="accb192ba6b4b91a1cb2f8080934fd428"></a><!-- doxytag: member="pu_contrib::E" ref="accb192ba6b4b91a1cb2f8080934fd428" args="" -->
+double **&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#accb192ba6b4b91a1cb2f8080934fd428">E</a></td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">exterior loop <br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a33d5ada6e861db0c81aa3d5b2989262e"></a><!-- doxytag: member="pu_contrib::length" ref="a33d5ada6e861db0c81aa3d5b2989262e" args="" -->
+int&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#a33d5ada6e861db0c81aa3d5b2989262e">length</a></td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">length of the input sequence <br/></td></tr>
+<tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a403c1c7f20beeeffba7632fac0cfcbff"></a><!-- doxytag: member="pu_contrib::w" ref="a403c1c7f20beeeffba7632fac0cfcbff" args="" -->
+int&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html#a403c1c7f20beeeffba7632fac0cfcbff">w</a></td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">longest unpaired region <br/></td></tr>
 </table>
-<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
-<div class="textblock"><p>contributions to p_u </p>
-</div><hr/>The documentation for this struct was generated from the following file:<ul>
-<li>/home/mescalin/ronny/public_html/programs/ViennaRNA/H/<a class="el" href="data__structures_8h_source.html">data_structures.h</a></li>
+<hr/><a name="_details"></a><h2>Detailed Description</h2>
+<p>contributions to p_u </p>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/<a class="el" href="data__structures_8h_source.html">data_structures.h</a></li>
 </ul>
-</div><!-- contents -->
-</div><!-- doc-content -->
-<!-- start footer part -->
-<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
-  <ul>
-    <li class="navelem"><a class="el" href="structpu__contrib.html">pu_contrib</a></li>
-    <li class="footer">Generated on Wed Jul 24 2013 13:39:00 for RNAlib-2.1.2 by
-    <a href="http://www.doxygen.org/index.html">
-    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
-  </ul>
 </div>
+<hr size="1"/><address style="text-align: right;"><small>Generated on 11 Apr 2017 for RNAlib-2.1.2 by&nbsp;
+<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
 </body>
 </html>