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-<div class="title">svm_utils.h</div> </div>
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-<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__</span></div>
-<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_SUBOPT_H__</span></div>
-<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="preprocessor"></span></div>
-<div class="line"><a name="l00004"></a><span class="lineno"><a class="code" href="structsvm__model.html"> 4</a></span> <span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="structsvm__model.html">svm_model</a>{</div>
-<div class="line"><a name="l00005"></a><span class="lineno"> 5</span>  <span class="keyword">struct </span>svm_parameter param;</div>
-<div class="line"><a name="l00006"></a><span class="lineno"> 6</span>  <span class="keywordtype">int</span> nr_class;</div>
-<div class="line"><a name="l00007"></a><span class="lineno"> 7</span>  <span class="keywordtype">int</span> l;</div>
-<div class="line"><a name="l00008"></a><span class="lineno"> 8</span>  <span class="keyword">struct </span>svm_node **SV;</div>
-<div class="line"><a name="l00009"></a><span class="lineno"> 9</span>  <span class="keywordtype">double</span> **sv_coef;</div>
-<div class="line"><a name="l00010"></a><span class="lineno"> 10</span>  <span class="keywordtype">double</span> *rho;</div>
-<div class="line"><a name="l00011"></a><span class="lineno"> 11</span>  <span class="keywordtype">double</span> *probA;</div>
-<div class="line"><a name="l00012"></a><span class="lineno"> 12</span>  <span class="keywordtype">double</span> *probB;</div>
-<div class="line"><a name="l00013"></a><span class="lineno"> 13</span>  <span class="keywordtype">int</span> *label;</div>
-<div class="line"><a name="l00014"></a><span class="lineno"> 14</span>  <span class="keywordtype">int</span> *nSV;</div>
-<div class="line"><a name="l00015"></a><span class="lineno"> 15</span>  <span class="keywordtype">int</span> free_sv;</div>
-<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> } <a class="code" href="structsvm__model.html">svm_model</a>;</div>
-<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> </div>
-<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="keyword">extern</span> <span class="keywordtype">char</span> *avg_model_string;</div>
-<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="keyword">extern</span> <span class="keywordtype">char</span> *sd_model_string;</div>
-<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> </div>
-<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="keywordtype">float</span> get_z(<span class="keywordtype">char</span> *sequence,</div>
-<div class="line"><a name="l00022"></a><span class="lineno"> 22</span>  <span class="keywordtype">double</span> energy);</div>
-<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="keywordtype">double</span> avg_regression (<span class="keywordtype">int</span> N,</div>
-<div class="line"><a name="l00024"></a><span class="lineno"> 24</span>  <span class="keywordtype">int</span> A,</div>
-<div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  <span class="keywordtype">int</span> C,</div>
-<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  <span class="keywordtype">int</span> G,</div>
-<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  <span class="keywordtype">int</span> T,</div>
-<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  <span class="keyword">struct</span> <a class="code" href="structsvm__model.html">svm_model</a> *avg_model,</div>
-<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <span class="keywordtype">int</span> *info );</div>
-<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="keywordtype">double</span> sd_regression (<span class="keywordtype">int</span> N,</div>
-<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  <span class="keywordtype">int</span> A,</div>
-<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <span class="keywordtype">int</span> C,</div>
-<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  <span class="keywordtype">int</span> G,</div>
-<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="keywordtype">int</span> T,</div>
-<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <span class="keyword">struct</span> <a class="code" href="structsvm__model.html">svm_model</a> *sd_model);</div>
-<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="keywordtype">double</span> minimal_sd (<span class="keywordtype">int</span> N,</div>
-<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keywordtype">int</span> A,</div>
-<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  <span class="keywordtype">int</span> C,</div>
-<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  <span class="keywordtype">int</span> G,</div>
-<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  <span class="keywordtype">int</span> T);</div>
-<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <a class="code" href="structsvm__model.html">svm_model</a> *svm_load_model_string(<span class="keywordtype">char</span> *modelString);</div>
-<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="keywordtype">int</span> *get_seq_composition( <span class="keywordtype">short</span> *S,</div>
-<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> start,</div>
-<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> stop);</div>
-<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
-<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor">#endif</span></div>
-</div><!-- fragment --></div><!-- contents -->
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- <ul>
- <li class="navelem"><a class="el" href="dir_d72344b28b4f2089ce25682c4e6eba22.html">H</a></li><li class="navelem"><b>svm_utils.h</b></li>
- <li class="footer">Generated on Wed Jul 24 2013 13:38:56 for RNAlib-2.1.2 by
- <a href="http://www.doxygen.org/index.html">
- <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
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+<h1>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/svm_utils.h</h1><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__</span>
+<a name="l00002"></a>00002 <span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_SUBOPT_H__</span>
+<a name="l00003"></a>00003 <span class="preprocessor"></span>
+<a name="l00004"></a><a class="code" href="structsvm__model.html">00004</a> <span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="structsvm__model.html">svm_model</a>{
+<a name="l00005"></a>00005 <span class="keyword">struct </span>svm_parameter param;
+<a name="l00006"></a>00006 <span class="keywordtype">int</span> nr_class;
+<a name="l00007"></a>00007 <span class="keywordtype">int</span> l;
+<a name="l00008"></a>00008 <span class="keyword">struct </span>svm_node **SV;
+<a name="l00009"></a>00009 <span class="keywordtype">double</span> **sv_coef;
+<a name="l00010"></a>00010 <span class="keywordtype">double</span> *rho;
+<a name="l00011"></a>00011 <span class="keywordtype">double</span> *probA;
+<a name="l00012"></a>00012 <span class="keywordtype">double</span> *probB;
+<a name="l00013"></a>00013 <span class="keywordtype">int</span> *label;
+<a name="l00014"></a>00014 <span class="keywordtype">int</span> *nSV;
+<a name="l00015"></a>00015 <span class="keywordtype">int</span> free_sv;
+<a name="l00016"></a>00016 } <a class="code" href="structsvm__model.html">svm_model</a>;
+<a name="l00017"></a>00017
+<a name="l00018"></a>00018 <span class="keyword">extern</span> <span class="keywordtype">char</span> *avg_model_string;
+<a name="l00019"></a>00019 <span class="keyword">extern</span> <span class="keywordtype">char</span> *sd_model_string;
+<a name="l00020"></a>00020
+<a name="l00021"></a>00021 <span class="keywordtype">float</span> get_z(<span class="keywordtype">char</span> *sequence,
+<a name="l00022"></a>00022 <span class="keywordtype">double</span> energy);
+<a name="l00023"></a>00023 <span class="keywordtype">double</span> avg_regression (<span class="keywordtype">int</span> N,
+<a name="l00024"></a>00024 <span class="keywordtype">int</span> A,
+<a name="l00025"></a>00025 <span class="keywordtype">int</span> C,
+<a name="l00026"></a>00026 <span class="keywordtype">int</span> G,
+<a name="l00027"></a>00027 <span class="keywordtype">int</span> T,
+<a name="l00028"></a>00028 <span class="keyword">struct</span> <a class="code" href="structsvm__model.html">svm_model</a> *avg_model,
+<a name="l00029"></a>00029 <span class="keywordtype">int</span> *info );
+<a name="l00030"></a>00030 <span class="keywordtype">double</span> sd_regression (<span class="keywordtype">int</span> N,
+<a name="l00031"></a>00031 <span class="keywordtype">int</span> A,
+<a name="l00032"></a>00032 <span class="keywordtype">int</span> C,
+<a name="l00033"></a>00033 <span class="keywordtype">int</span> G,
+<a name="l00034"></a>00034 <span class="keywordtype">int</span> T,
+<a name="l00035"></a>00035 <span class="keyword">struct</span> <a class="code" href="structsvm__model.html">svm_model</a> *sd_model);
+<a name="l00036"></a>00036 <span class="keywordtype">double</span> minimal_sd (<span class="keywordtype">int</span> N,
+<a name="l00037"></a>00037 <span class="keywordtype">int</span> A,
+<a name="l00038"></a>00038 <span class="keywordtype">int</span> C,
+<a name="l00039"></a>00039 <span class="keywordtype">int</span> G,
+<a name="l00040"></a>00040 <span class="keywordtype">int</span> T);
+<a name="l00041"></a>00041 <a class="code" href="structsvm__model.html">svm_model</a> *svm_load_model_string(<span class="keywordtype">char</span> *modelString);
+<a name="l00042"></a>00042 <span class="keywordtype">int</span> *get_seq_composition( <span class="keywordtype">short</span> *S,
+<a name="l00043"></a>00043 <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> start,
+<a name="l00044"></a>00044 <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> stop);
+<a name="l00045"></a>00045
+<a name="l00046"></a>00046 <span class="preprocessor">#endif</span>
+</pre></div></div>
+<hr size="1"/><address style="text-align: right;"><small>Generated on 11 Apr 2017 for RNAlib-2.1.2 by
+<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
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