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JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.
[jabaws.git] / binaries / src / ViennaRNA / doc / html / tree.html
diff --git a/binaries/src/ViennaRNA/doc/html/tree.html b/binaries/src/ViennaRNA/doc/html/tree.html
new file mode 100644 (file)
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+++ b/binaries/src/ViennaRNA/doc/html/tree.html
@@ -0,0 +1,250 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+    <meta http-equiv="Content-Style-Type" content="text/css" />
+    <meta http-equiv="Content-Language" content="en" />
+    <link rel="stylesheet" href="doxygen.css"/>
+    <title>TreeView</title>
+    <script type="text/javascript">
+    <!-- // Hide script from old browsers
+    
+    function toggleFolder(id, imageNode) 
+    {
+      var folder = document.getElementById(id);
+      var l = imageNode.src.length;
+      if (imageNode.src.substring(l-20,l)=="ftv2folderclosed.png" || 
+          imageNode.src.substring(l-18,l)=="ftv2folderopen.png")
+      {
+        imageNode = imageNode.previousSibling;
+        l = imageNode.src.length;
+      }
+      if (folder == null) 
+      {
+      } 
+      else if (folder.style.display == "block") 
+      {
+        if (imageNode != null) 
+        {
+          imageNode.nextSibling.src = "ftv2folderclosed.png";
+          if (imageNode.src.substring(l-13,l) == "ftv2mnode.png")
+          {
+            imageNode.src = "ftv2pnode.png";
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+          else if (imageNode.src.substring(l-17,l) == "ftv2mlastnode.png")
+          {
+            imageNode.src = "ftv2plastnode.png";
+          }
+        }
+        folder.style.display = "none";
+      } 
+      else 
+      {
+        if (imageNode != null) 
+        {
+          imageNode.nextSibling.src = "ftv2folderopen.png";
+          if (imageNode.src.substring(l-13,l) == "ftv2pnode.png")
+          {
+            imageNode.src = "ftv2mnode.png";
+          }
+          else if (imageNode.src.substring(l-17,l) == "ftv2plastnode.png")
+          {
+            imageNode.src = "ftv2mlastnode.png";
+          }
+        }
+        folder.style.display = "block";
+      }
+    }
+
+    // End script hiding -->        
+    </script>
+  </head>
+
+  <body class="ftvtree">
+    <div class="directory">
+      <h3 class="swap"><span>RNAlib-2.1.2</span></h3>
+      <div style="display: block;">
+        <p><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="main.html" target="basefrm">ViennaRNA Package core - RNAlib</a></p>
+        <p><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="mp_parse.html" target="basefrm">Parsing and Comparing - Functions to Manipulate Structures</a></p>
+        <p><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="mp_utils.html" target="basefrm">Utilities - Odds and Ends</a></p>
+        <p><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="mp_example.html" target="basefrm">Example - A Small Example Program</a></p>
+        <p><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="deprecated.html" target="basefrm">Deprecated List</a></p>
+        <p><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder1', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder1', this)"/><a class="el" href="modules.html" target="basefrm">Modules</a></p>
+        <div id="folder1">
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder2', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder2', this)"/><a class="el" href="group__folding__routines.html" target="basefrm">RNA Secondary Structure Folding</a></p>
+          <div id="folder2">
+            <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder3', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder3', this)"/><a class="el" href="group__mfe__fold.html" target="basefrm">Calculating Minimum Free Energy (MFE) Structures</a></p>
+            <div id="folder3">
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__mfe__cofold.html" target="basefrm">MFE Structures of two hybridized Sequences</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__consensus__mfe__fold.html" target="basefrm">MFE Consensus Structures for Sequence Alignment(s)</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__local__mfe__fold.html" target="basefrm">Local MFE structure Prediction and Z-scores</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__kl__neighborhood__mfe.html" target="basefrm">Calculating MFE representatives of a Distance Based Partitioning</a></p>
+            </div>
+            <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder4', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder4', this)"/><a class="el" href="group__pf__fold.html" target="basefrm">Calculating Partition Functions and Pair Probabilities</a></p>
+            <div id="folder4">
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__mea__fold.html" target="basefrm">Compute the structure with maximum expected accuracy (MEA)</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__centroid__fold.html" target="basefrm">Compute the centroid structure</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__pf__cofold.html" target="basefrm">Partition Function for two hybridized Sequences</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__up__cofold.html" target="basefrm">Partition Function for two hybridized Sequences as a stepwise Process</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__consensus__pf__fold.html" target="basefrm">Partition Function and Base Pair Probabilities for Sequence Alignment(s)</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__local__pf__fold.html" target="basefrm">Partition functions for locally stable secondary structures</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__kl__neighborhood__pf.html" target="basefrm">Calculate Partition Functions of a Distance Based Partitioning</a></p>
+            </div>
+            <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder5', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder5', this)"/><a class="el" href="group__subopt__fold.html" target="basefrm">Enumerating Suboptimal Structures</a></p>
+            <div id="folder5">
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__subopt__zuker.html" target="basefrm">Suboptimal structures according to Zuker et al. 1989</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__subopt__wuchty.html" target="basefrm">Suboptimal structures within an energy band arround the MFE</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2plastnode.png" alt="\" width="16" height="22" onclick="toggleFolder('folder6', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder6', this)"/><a class="el" href="group__subopt__stochbt.html" target="basefrm">Stochastic backtracking in the Ensemble</a></p>
+              <div id="folder6">
+                <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__consensus__stochbt.html" target="basefrm">Stochastic Backtracking of Consensus Structures from Sequence Alignment(s)</a></p>
+                <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__kl__neighborhood__stochbt.html" target="basefrm">Stochastic Backtracking of Structures from Distance Based Partitioning</a></p>
+              </div>
+            </div>
+            <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder7', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder7', this)"/><a class="el" href="group__cofold.html" target="basefrm">Calculate Secondary Structures of two RNAs upon Dimerization</a></p>
+            <div id="folder7">
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__mfe__cofold.html" target="basefrm">MFE Structures of two hybridized Sequences</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__pf__cofold.html" target="basefrm">Partition Function for two hybridized Sequences</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__up__cofold.html" target="basefrm">Partition Function for two hybridized Sequences as a stepwise Process</a></p>
+            </div>
+            <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder8', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder8', this)"/><a class="el" href="group__consensus__fold.html" target="basefrm">Predicting Consensus Structures from Alignment(s)</a></p>
+            <div id="folder8">
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__consensus__mfe__fold.html" target="basefrm">MFE Consensus Structures for Sequence Alignment(s)</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__consensus__pf__fold.html" target="basefrm">Partition Function and Base Pair Probabilities for Sequence Alignment(s)</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__consensus__stochbt.html" target="basefrm">Stochastic Backtracking of Consensus Structures from Sequence Alignment(s)</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__local__consensus__fold.html" target="basefrm">Local MFE consensus structures for Sequence Alignments</a></p>
+            </div>
+            <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder9', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder9', this)"/><a class="el" href="group__local__fold.html" target="basefrm">Predicting Locally stable structures of large sequences</a></p>
+            <div id="folder9">
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__local__mfe__fold.html" target="basefrm">Local MFE structure Prediction and Z-scores</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__local__pf__fold.html" target="basefrm">Partition functions for locally stable secondary structures</a></p>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__local__consensus__fold.html" target="basefrm">Local MFE consensus structures for Sequence Alignments</a></p>
+            </div>
+            <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder10', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder10', this)"/><a class="el" href="group__energy__parameters.html" target="basefrm">Change and Precalculate Energy Parameter Sets and Boltzmann Factors</a></p>
+            <div id="folder10">
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2plastnode.png" alt="\" width="16" height="22" onclick="toggleFolder('folder11', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder11', this)"/><a class="el" href="group__energy__parameters__rw.html" target="basefrm">Reading/Writing energy parameter sets from/to File</a></p>
+              <div id="folder11">
+                <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__energy__parameters__convert.html" target="basefrm">Converting energy parameter files</a></p>
+              </div>
+            </div>
+            <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__eval.html" target="basefrm">Energy evaluation</a></p>
+            <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__inverse__fold.html" target="basefrm">Searching Sequences for Predefined Structures</a></p>
+            <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2plastnode.png" alt="\" width="16" height="22" onclick="toggleFolder('folder12', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder12', this)"/><a class="el" href="group__class__fold.html" target="basefrm">Classified Dynamic Programming</a></p>
+            <div id="folder12">
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder13', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder13', this)"/><a class="el" href="group__kl__neighborhood.html" target="basefrm">Distance based partitioning of the Secondary Structure Space</a></p>
+              <div id="folder13">
+                <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__kl__neighborhood__mfe.html" target="basefrm">Calculating MFE representatives of a Distance Based Partitioning</a></p>
+                <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__kl__neighborhood__pf.html" target="basefrm">Calculate Partition Functions of a Distance Based Partitioning</a></p>
+                <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__kl__neighborhood__stochbt.html" target="basefrm">Stochastic Backtracking of Structures from Distance Based Partitioning</a></p>
+              </div>
+              <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__dos.html" target="basefrm">Compute the Density of States</a></p>
+            </div>
+          </div>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="group__parse.html" target="basefrm">Parsing and Comparing - Functions to Manipulate Structures</a></p>
+        </div>
+        <p><img src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('folder14', this)"/><img src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('folder14', this)"/><a class="el" href="annotated.html" target="basefrm">Data Structures</a></p>
+        <div id="folder14">
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structbondT.html" target="basefrm">bondT</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structbondTEn.html" target="basefrm">bondTEn</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structcofoldF.html" target="basefrm">cofoldF</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structConcEnt.html" target="basefrm">ConcEnt</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structconstrain.html" target="basefrm">constrain</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structCOORDINATE.html" target="basefrm">COORDINATE</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structcpair.html" target="basefrm">cpair</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structduplexT.html" target="basefrm">duplexT</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structdupVar.html" target="basefrm">dupVar</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structfolden.html" target="basefrm">folden</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structinteract.html" target="basefrm">interact</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structintermediate__t.html" target="basefrm">intermediate_t</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structINTERVAL.html" target="basefrm">INTERVAL</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structLIST.html" target="basefrm">LIST</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structLST__BUCKET.html" target="basefrm">LST_BUCKET</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structmodel__detailsT.html" target="basefrm">model_detailsT</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structmove__t.html" target="basefrm">move_t</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structPAIR.html" target="basefrm">PAIR</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structpair__info.html" target="basefrm">pair_info</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structpairpro.html" target="basefrm">pairpro</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structparamT.html" target="basefrm">paramT</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structpath__t.html" target="basefrm">path_t</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structpf__paramT.html" target="basefrm">pf_paramT</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structplist.html" target="basefrm">plist</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structPostorder__list.html" target="basefrm">Postorder_list</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structpu__contrib.html" target="basefrm">pu_contrib</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structpu__out.html" target="basefrm">pu_out</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structsect.html" target="basefrm">sect</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structsnoopT.html" target="basefrm">snoopT</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structSOLUTION.html" target="basefrm">SOLUTION</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structstruct__en.html" target="basefrm">struct_en</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structsvm__model.html" target="basefrm">svm_model</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structswString.html" target="basefrm">swString</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structTree.html" target="basefrm">Tree</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structTwoDfold__solution.html" target="basefrm">TwoDfold_solution</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structTwoDfold__vars.html" target="basefrm">TwoDfold_vars</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structTwoDpfold__solution.html" target="basefrm">TwoDpfold_solution</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="structTwoDpfold__vars.html" target="basefrm">TwoDpfold_vars</a></p>
+        </div>
+        <p><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="functions.html" target="basefrm">Data Fields</a></p>
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+        <div id="folder15">
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+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="2Dfold_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="2Dpfold_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dpfold.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/ali_plex.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="alifold_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/alifold.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/aln_util.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="cofold_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/cofold.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="convert__epars_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/convert_epars.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="data__structures_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/data_structures.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="dist__vars_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/dist_vars.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="duplex_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/duplex.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="edit__cost_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/edit_cost.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="energy__const_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy_const.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy_par.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="findpath_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/findpath.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="fold_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/fold.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="fold__vars_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/fold_vars.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="gquad_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/gquad.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="inverse_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/inverse.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="Lfold_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/Lfold.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="loop__energies_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/loop_energies.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="LPfold_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/LPfold.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="MEA_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/MEA.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="mm_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/mm.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/move_set.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="naview_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/naview.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/pair_mat.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="params_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/params.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="part__func_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part_func.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="part__func__co_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part_func_co.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="part__func__up_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part_func_up.h</a></p>
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+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/plex.h</b></p>
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+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="profiledist_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/profiledist.h</a></p>
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+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="utils_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/utils.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="1_88_84__epars_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/1.8.4_epars.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="1_88_84__intloops_8h.html" target="basefrm">/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/1.8.4_intloops.h</a></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/intl11.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/intl11dH.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/intl21.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/intl21dH.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/intl22.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/intl22dH.h</b></p>
+          <p><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><b>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/list.h</b></p>
+        </div>
+        <p><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2doc.png" alt="*" width="24" height="22" /><a class="el" href="globals.html" target="basefrm">Globals</a></p>
+      </div>
+    </div>
+  </body>
+</html>
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