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[jabaws.git] / binaries / src / ViennaRNA / doc / latex / 1_88_84__epars_8h.tex

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+\hypertarget{1_88_84__epars_8h}{\section{/home/asherstnev/\-Projects/\-Java.projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/lib/1.8.4\-\_\-epars.h File Reference}
+\label{1_88_84__epars_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/lib/1.\-8.\-4\-\_\-epars.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/lib/1.\-8.\-4\-\_\-epars.\-h}}
+}
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+
+Free energy parameters for parameter file conversion.  
+
+
+
+
+\subsection{Detailed Description}
+Free energy parameters for parameter file conversion. This file contains the free energy parameters used in Vienna\-R\-N\-A\-Package 1.\-8.\-4. They are summarized in\-:
+
+D.\-H.\-Mathews, J. Sabina, M. Z\-Uker, D.\-H. Turner \char`\"{}\-Expanded sequence dependence of thermodynamic parameters improves
+prediction of R\-N\-A secondary structure\char`\"{} J\-M\-B, 288, pp 911-\/940, 1999
+
+Enthalpies taken from\-:
+
+A. Walter, D Turner, J Kim, M Lyttle, P M\char`\"{}uller, D Mathews, M Zuker
+\char`\"{}Coaxial stckaing of helices enhances binding of oligoribonucleotides.." P\-N\-A\-S, 91, pp 9218-\/9222, 1994
+
+D.\-H. Turner, N. Sugimoto, and S.\-M. Freier. \char`\"{}\-R\-N\-A Structure Prediction\char`\"{}, Ann. Rev. Biophys. Biophys. Chem. 17, 167-\/192, 1988.
+
+John A.\-Jaeger, Douglas H.\-Turner, and Michael Zuker. \char`\"{}\-Improved predictions of secondary structures for R\-N\-A\char`\"{}, P\-N\-A\-S, 86, 7706-\/7710, October 1989.
+
+L. He, R. Kierzek, J. Santa\-Lucia, A.\-E. Walter, D.\-H. Turner \char`\"{}\-Nearest-\/\-Neughbor Parameters for G\-U Mismatches....\char`\"{} Biochemistry 1991, 30 11124-\/11132
+
+A.\-E. Peritz, R. Kierzek, N, Sugimoto, D.\-H. Turner \char`\"{}\-Thermodynamic Study of Internal Loops in Oligoribonucleotides...\char`\"{} Biochemistry 1991, 30, 6428--6435 
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