JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / 2Dfold_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/2Dfold_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/2Dfold_8h_source.tex
index 4ce8dc5..230213b 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/2Dfold_8h_source.tex
+++ b/binaries/src/ViennaRNA/doc/latex/2Dfold_8h_source.tex
@@ -1,8 +1,9 @@
-\hypertarget{2Dfold_8h}{\section{2\-Dfold.h}
-\label{2Dfold_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/2\-Dfold.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/2\-Dfold.\-h}}
+\hypertarget{2Dfold_8h_source}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h}
 }
 
-\begin{DoxyCode}
+
+\begin{footnotesize}\begin{alltt}
 00001 \textcolor{comment}{/*}
 00002 \textcolor{comment}{      minimum free energy}
 00003 \textcolor{comment}{      RNA secondary structure with}
@@ -12,7 +13,7 @@
 00007 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_TWO\_D\_FOLD\_H\_\_}
 00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_TWO\_D\_FOLD\_H\_\_}
 00009 \textcolor{preprocessor}{}
-00032 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00032 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
 00033 
 00034 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
 00035 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
@@ -20,26 +21,25 @@
 00037 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
 00038 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
 00039 \textcolor{preprocessor}{}
-00057 \hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *\hyperlink{group__kl__neighborhood__mfe_gac9284f132cf0eaa0a2f43590eda05488}{get\_TwoDfold\_variables}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *seq,
+00057 \hyperlink{structTwoDfold__vars}{TwoDfold_vars} *\hyperlink{group__kl__neighborhood__mfe_gac9284f132cf0eaa0a2f43590eda05488}{get_TwoDfold_variables}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *seq,
 00058                                       \textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure1,
 00059                                       \textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure2,
 00060                                       \textcolor{keywordtype}{int} circ);
 00061 
-00071 \textcolor{keywordtype}{void}          \hyperlink{group__kl__neighborhood__mfe_ga05bf4f31d216b1b160fd2d3d68e9b487}{destroy\_TwoDfold\_variables}(\hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *
-      our\_variables);
+00071 \textcolor{keywordtype}{void}          \hyperlink{group__kl__neighborhood__mfe_ga05bf4f31d216b1b160fd2d3d68e9b487}{destroy_TwoDfold_variables}(\hyperlink{structTwoDfold__vars}{TwoDfold_vars} *our\_variables);
 00072 
-00076 DEPRECATED(\hyperlink{structTwoDfold__solution}{TwoDfold\_solution} **TwoDfold(\hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *our\_variables,
+00076 DEPRECATED(\hyperlink{structTwoDfold__solution}{TwoDfold_solution} **TwoDfold(\hyperlink{structTwoDfold__vars}{TwoDfold_vars} *our\_variables,
 00077                                         \textcolor{keywordtype}{int} distance1,
 00078                                         \textcolor{keywordtype}{int} distance2));
 00079 
-00104 \hyperlink{structTwoDfold__solution}{TwoDfold\_solution} *\hyperlink{group__kl__neighborhood__mfe_ga47da790166020558d27323aef489703e}{TwoDfoldList}(\hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *vars,
+00104 \hyperlink{structTwoDfold__solution}{TwoDfold_solution} *\hyperlink{group__kl__neighborhood__mfe_ga47da790166020558d27323aef489703e}{TwoDfoldList}(\hyperlink{structTwoDfold__vars}{TwoDfold_vars} *vars,
 00105                                 \textcolor{keywordtype}{int} distance1,
 00106                                 \textcolor{keywordtype}{int} distance2);
 00107 
-00126 \textcolor{keywordtype}{char} *\hyperlink{group__kl__neighborhood__mfe_gaf4dc05bf8fc1ea53acd7aeb798ba80c2}{TwoDfold\_backtrack\_f5}(\textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} j,
+00126 \textcolor{keywordtype}{char} *\hyperlink{group__kl__neighborhood__mfe_gaf4dc05bf8fc1ea53acd7aeb798ba80c2}{TwoDfold_backtrack_f5}(\textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} j,
 00127                             \textcolor{keywordtype}{int} k,
 00128                             \textcolor{keywordtype}{int} l,
-00129                             \hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *vars);
+00129                             \hyperlink{structTwoDfold__vars}{TwoDfold_vars} *vars);
 00130 
 00134 \textcolor{preprocessor}{#endif}
-\end{DoxyCode}
+\end{alltt}\end{footnotesize}